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2020 – today
- 2023
[j4]Luc Mottin, Jean-Philippe Goldman, Christoph Jäggli, Rita Achermann, Julien Gobeill, Julien Knafou, Julien Ehrsam, Alexandre Wicky, Camille L. Gerard, Tanja Schwenk, Mélinda Charrier, Petros Tsantoulis
, Christian Lovis, Alexander B. Leichtle, Michael Kiessling, Olivier Michielin, Sylvain Pradervand, Vasiliki Foufi, Patrick Ruch:
Multilingual RECIST classification of radiology reports using supervised learning. Frontiers Digit. Health 5 (2023)- [j3]Sohrab Ferdowsi, Julien Knafou, Nikolay Borissov, David Vicente Alvarez, Rahul Mishra, Poorya Amini, Douglas Teodoro:
Deep learning-based risk prediction for interventional clinical trials based on protocol design: A retrospective study. Patterns 4(3): 100689 (2023) - 2022
- [c10]Luc Mottin, Jean-Philippe Goldman, Christoph Jäggli, Rita Achermann, Julien Gobeill, Julien Knafou, Julien Ehrsam, Alexandre Wicky, Camille L. Gerard, Tanja Schwenk, Mélinda Charrier, Petros Tsantoulis, Christian Lovis, Alexander B. Leichtle, Michael Kiessling, Olivier Michielin, Sylvain Pradervand, Vasiliki Foufi, Patrick Ruch:
Classification of oncology treatment responses from radiology reports with supervised machine learning. AMIA 2022 - 2021
- [j2]Nona Naderi, Julien Knafou, Jenny Copara, Patrick Ruch, Douglas Teodoro:
Ensemble of Deep Masked Language Models for Effective Named Entity Recognition in Health and Life Science Corpora. Frontiers Res. Metrics Anal. 6: 689803 (2021) - [c9]Sohrab Ferdowsi, Nikolay Borissov, Julien Knafou, Poorya Amini, Douglas Teodoro:
Classification of hierarchical text using geometric deep learning: the case of clinical trials corpus. EMNLP (1) 2021: 608-618 - [i2]Sohrab Ferdowsi, Nikolay Borissov, Julien Knafou, Poorya Amini, Douglas Teodoro:
Classification of hierarchical text using geometric deep learning: the case of clinical trials corpus. CoRR abs/2110.15710 (2021) - 2020
- [j1]Douglas Teodoro, Julien Knafou, Nona Naderi, Emilie Pasche, Julien Gobeill, Cecilia N. Arighi, Patrick Ruch:
UPCLASS: a deep learning-based classifier for UniProtKB entry publications. Database J. Biol. Databases Curation 2020 (2020) - [c8]Elisa Terumi Rubel Schneider, João Vitor Andrioli de Souza, Julien Knafou, Lucas Emanuel Silva e Oliveira, Jenny Copara, Yohan Bonescki Gumiel, Lucas Ferro Antunes de Oliveira, Emerson Cabrera Paraiso, Douglas Teodoro, Claudia Maria Cabral Moro Barra:
BioBERTpt - A Portuguese Neural Language Model for Clinical Named Entity Recognition. ClinicalNLP@EMNLP 2020: 65-72 - [c7]Julien Knafou, Nona Naderi, Jenny Copara, Douglas Teodoro, Patrick Ruch:
BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models. W-NUT@EMNLP 2020: 305-313 - [c6]Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro:
Named Entity Recognition in Chemical Patents using Ensemble of Contextual Language Models. CLEF (Working Notes) 2020 - [c5]Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto, Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro, Daniel M. Lowe, John Mayfield, Abdullatif Köksal, Hilal Dönmez, Elif Özkirimli, Arzucan Özgür, Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes, C. S. Malarkodi, Pattabhi Rk Rao, Sobha Lalitha Devi, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. CLEF (Working Notes) 2020 - [c4]Jenny Copara, Julien Knafou, Nona Naderi, Claudia Moro, Patrick Ruch, Douglas Teodoro:
Contextualized French Language Models for Biomedical Named Entity Recognition. JEP-TALN-RECITAL (DEFT) 2020: 36-48 - [c3]Julien Knafou, Matthew Jeffryes, Sohrab Ferdowsi, Patrick Ruch:
SIB Text Mining at TREC 2020 Deep Learning Track. TREC 2020 - [i1]Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro:
Named entity recognition in chemical patents using ensemble of contextual language models. CoRR abs/2007.12569 (2020)
2010 – 2019
- 2019
- [c2]Paul Van Rijen, Douglas Teodoro, Nona Naderi, Luc Mottin, Julien Knafou, Matt Jeffryes, Patrick Ruch:
A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts. CLEF (Working Notes) 2019 - [c1]Julien Knafou, Matt Jeffryes, Luc Mottin, Douglas Teodoro, Patrick Ruch:
SIB Text Mining at TREC 2019 Deep Learning Track: Working Note. TREC 2019
Coauthor Index
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