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2020 – today
- 2024
[c29]Xiangyu Zhao, Zehui Li, Mingzhu Shen, Guy-Bart Stan, Pietro Liò, Yiren Zhao:
Enhancing Node Representations for Real-World Complex Networks with Topological Augmentation. ECAI 2024: 1487-1494- [i15]Zehui Li, Yuhao Ni, William A. V. Beardall, Guoxuan Xia, Akashaditya Das, Guy-Bart Stan, Yiren Zhao:
DiscDiff: Latent Diffusion Model for DNA Sequence Generation. CoRR abs/2402.06079 (2024) - [i14]Xiangyu Zhao, Zehui Li, Mingzhu Shen, Guy-Bart Stan, Pietro Liò, Yiren Zhao:
Enhancing Real-World Complex Network Representations with Hyperedge Augmentation. CoRR abs/2402.13033 (2024) - [i13]Zehui Li, Vallijah Subasri, Guy-Bart Stan, Yiren Zhao, Bo Wang:
GV-Rep: A Large-Scale Dataset for Genetic Variant Representation Learning. CoRR abs/2407.16940 (2024) - 2023
- [j21]Eszter Csibra
, Guy-Bart Stan:
Parsley: a web app for parsing data from plate readers. Bioinform. 39(12) (2023) - [c28]Abhilash Patel, Guy-Bart Stan:
Exploiting Resource Constraints for Controlling Biomolecular Circuits. CDC 2023: 2699-2705 - [i12]Zehui Li, Xiangyu Zhao, Mingzhu Shen, Guy-Bart Stan, Pietro Liò, Yiren Zhao:
Hybrid Graph: A Unified Graph Representation with Datasets and Benchmarks for Complex Graphs. CoRR abs/2306.05108 (2023) - [i11]Zehui Li, Akashaditya Das, William A. V. Beardall, Yiren Zhao, Guy-Bart Stan:
Genomic Interpreter: A Hierarchical Genomic Deep Neural Network with 1D Shifted Window Transformer. CoRR abs/2306.05143 (2023) - [i10]Zehui Li, Yuhao Ni, Tim August B. Huygelen, Akashaditya Das, Guoxuan Xia, Guy-Bart Stan, Yiren Zhao:
Latent Diffusion Model for DNA Sequence Generation. CoRR abs/2310.06150 (2023) - 2022
- [c27]Giansimone Perrino, Guy-Bart Stan:
Robust set-point regulation of gene expression using resource competition couplings in mammalian cells. ACC 2022: 1373-1378 - 2021
- [j20]Hasan Baig, Pedro Fontanarossa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Shyam Bhakta, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Jihwan Lee, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Logan Terry, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers:
Synthetic biology open language visual (SBOL Visual) version 2.3. J. Integr. Bioinform. 18(3) (2021) - [j19]Juan Kuntz, Philipp Thomas, Guy-Bart Stan, Mauricio Barahona:
Approximations of Countably Infinite Linear Programs over Bounded Measure Spaces. SIAM J. Optim. 31(1): 604-625 (2021) - [j18]Juan Kuntz, Philipp Thomas, Guy-Bart Stan, Mauricio Barahona:
Stationary Distributions of Continuous-Time Markov Chains: A Review of Theory and Truncation-Based Approximations. SIAM Rev. 63(1): 3-64 (2021) - 2020
- [j17]Hasan Baig, Pedro Fontanarrosa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Michael Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers:
Synthetic biology open language visual (SBOL visual) version 2.2. J. Integr. Bioinform. 17(2-3) (2020)
2010 – 2019
- 2019
- [j16]Curtis Madsen, Ángel Goñi-Moreno, Zachary Palchick, Umesh P, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, James Alastair McLaughlin, Tramy Nguyen, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat:
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1. J. Integr. Bioinform. 16(2) (2019) - [j15]Juan Kuntz, Philipp Thomas, Guy-Bart Stan, Mauricio Barahona:
The Exit Time Finite State Projection Scheme: Bounding Exit Distributions and Occupation Measures of Continuous-Time Markov Chains. SIAM J. Sci. Comput. 41(2): A748-A769 (2019) - [c26]Zoltán A. Tuza, Guy-Bart Stan:
An Automatic Sparse Model Estimation Method Guided by Constraints That Encode System Properties. ECC 2019: 2171-2176 - 2018
- [j14]Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat:
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. J. Integr. Bioinform. 15(1) (2018) - [j13]Wei Pan, Ye Yuan, Lennart Ljung, Jorge M. Gonçalves, Guy-Bart Stan:
Identification of Nonlinear State-Space Systems From Heterogeneous Datasets. IEEE Trans. Control. Netw. Syst. 5(2): 737-747 (2018) - [c25]Zoltán A. Tuza, Guy-Bart Stan:
Characterization of Biologically Relevant Network Structures form Time-series Data. CDC 2018: 1089-1095 - [i9]Neave O'Clery, Ye Yuan, Guy-Bart Stan, Mauricio Barahona:
Global Network Prediction from Local Node Dynamics. CoRR abs/1809.00409 (2018) - [i8]Zoltán A. Tuza, Guy-Bart Stan:
Characterization of Biologically Relevant Network Structures form Time-series Data. CoRR abs/1809.08862 (2018) - 2017
- [j12]Ye Yuan, Anurag Rai, Enoch Yeung, Guy-Bart Stan, Sean Warnick, Jorge M. Gonçalves:
A Minimal Realization Technique for the Dynamical Structure Function of a Class of LTI Systems. IEEE Trans. Control. Netw. Syst. 4(2): 301-311 (2017) - 2016
- [j11]Aivar Sootla, Diego A. Oyarzún, David Angeli, Guy-Bart Stan:
Shaping pulses to control bistable systems: Analysis, computation and counterexamples. Autom. 63: 254-264 (2016) - [j10]Juan Kuntz, Michela Ottobre, Guy-Bart Stan, Mauricio Barahona:
Bounding Stationary Averages of Polynomial Diffusions via Semidefinite Programming. SIAM J. Sci. Comput. 38(6) (2016) - [j9]Wei Pan, Ye Yuan, Jorge M. Gonçalves, Guy-Bart Stan:
A Sparse Bayesian Approach to the Identification of Nonlinear State-Space Systems. IEEE Trans. Autom. Control. 61(1): 182-187 (2016) - [c24]Wei Pan, Filippo Menolascina, Guy-Bart Stan:
Online model selection for synthetic gene networks. CDC 2016: 776-782 - [c23]Mathias Foo, Rucha Sawlekar, Jongmin Kim, Declan G. Bates, Guy-Bart Stan, Vishwesh V. Kulkarni:
Biomolecular implementation of nonlinear system theoretic operators. ECC 2016: 1824-1831 - 2015
- [j8]Wei Pan, Ye Yuan, Henrik Sandberg, Jorge M. Gonçalves, Guy-Bart Stan:
Online fault diagnosis for nonlinear power systems. Autom. 55: 27-36 (2015) - [c22]Aivar Sootla, Diego A. Oyarzún, David Angeli, Guy-Bart Stan:
Shaping pulses to control bistable biological systems. ACC 2015: 3138-3143 - [c21]Wei Pan, Ye Yuan, Lennart Ljung, Jorge M. Gonçalves, Guy-Bart Stan:
Identifying biochemical reaction networks from heterogeneous datasets. CDC 2015: 2525-2530 - [i7]Wei Pan, Ye Yuan, Lennart Ljung, Jorge M. Gonçalves, Guy-Bart Stan:
Identifying Biochemical Reaction Networks From Heterogeneous Datasets. CoRR abs/1509.05153 (2015) - 2014
- [c20]Rhys J. R. Algar, Tom Ellis, Guy-Bart Stan:
Modelling essential interactions between synthetic genes and their chassis cell. CDC 2014: 5437-5444 - [i6]Wei Pan, Aivar Sootla, Guy-Bart Stan:
Distributed Reconstruction of Nonlinear Networks: An ADMM Approach. CoRR abs/1403.7429 (2014) - [i5]Aivar Sootla, Diego A. Oyarzún, David Angeli, Guy-Bart Stan:
Shaping Pulses to Control Multi-Stable Biological Systems. CoRR abs/1409.6150 (2014) - 2013
- [j7]Ye Yuan, Guy-Bart Stan, Ling Shi, Mauricio Barahona, Jorge M. Gonçalves:
Decentralised minimum-time consensus. Autom. 49(5): 1227-1235 (2013) - [c19]Wei Pan, Ye Yuan, Henrik Sandberg, Jorge M. Gonçalves, Guy-Bart Stan:
Real-time fault diagnosis for large-scale nonlinear power networks. CDC 2013: 2340-2345 - [c18]Aivar Sootla, Natalja Strelkowa, Damien Ernst, Mauricio Barahona, Guy-Bart Stan:
On periodic reference tracking using batch-mode reinforcement learning with application to gene regulatory network control. CDC 2013: 4086-4091 - [c17]Alejandro Vignoni, Diego A. Oyarzún, Jesús Picó, Guy-Bart Stan:
Control of protein concentrations in heterogeneous cell populations. ECC 2013: 3633-3639 - [c16]Jean-Baptiste Lugagne, Diego A. Oyarzún, Guy-Bart Stan:
Stochastic simulation of enzymatic reactions under transcriptional feedback regulation. ECC 2013: 3646-3651 - [i4]Aivar Sootla, Natalja Strelkowa, Damien Ernst, Mauricio Barahona, Guy-Bart Stan:
On Periodic Reference Tracking Using Batch-Mode Reinforcement Learning with Application to Gene Regulatory Network Control. CoRR abs/1303.2987 (2013) - [i3]Aivar Sootla, Natalja Strelkowa, Damien Ernst, Mauricio Barahona, Guy-Bart Stan:
Toggling a Genetic Switch Using Reinforcement Learning. CoRR abs/1303.3183 (2013) - 2012
- [j6]Kim H. Parker, Jordi Alastruey, Guy-Bart Stan:
Arterial reservoir-excess pressure and ventricular work. Medical Biol. Eng. Comput. 50(4): 419-424 (2012) - [j5]Abdullah Omar Hamadeh, Guy-Bart Stan, Rodolphe Sepulchre, Jorge M. Gonçalves:
Global State Synchronization in Networks of Cyclic Feedback Systems. IEEE Trans. Autom. Control. 57(2): 478-483 (2012) - [c15]Diego A. Oyarzún, Guy-Bart Stan:
Design tradeoffs in a synthetic gene control circuit for metabolic networks. ACC 2012: 2743-2748 - [c14]Wei Pan, Ye Yuan, Jorge M. Gonçalves, Guy-Bart Stan:
Reconstruction of arbitrary biochemical reaction networks: A compressive sensing approach. CDC 2012: 2334-2339 - [c13]Diego A. Oyarzún, Guy-Bart Stan:
Design constraints in an operon circuit for engineered control of metabolic networks. CDC 2012: 3608-3613 - [c12]J. Adebayo, T. Southwick, Vasu Chetty, Enoch Yeung, Ye Yuan, Jorge M. Gonçalves, Julianne H. Grose, J. Prince, Guy-Bart Stan, Sean Warnick:
Dynamical structure function identifiability conditions enabling signal structure reconstruction. CDC 2012: 4635-4641 - [i2]Wei Pan, Ye Yuan, Guy-Bart Stan:
Reconstruction of Arbitrary Biochemical Reaction Networks: A Compressive Sensing Approach. CoRR abs/1205.1720 (2012) - [i1]Ye Yuan, Guy-Bart Stan, Sean Warnick, Jorge M. Gonçalves:
Minimal realization of the dynamical structure function and its application to network reconstruction. CoRR abs/1209.3808 (2012) - 2011
- [j4]Ye Yuan, Guy-Bart Stan, Sean Warnick, Jorge M. Gonçalves:
Robust dynamical network structure reconstruction. Autom. 47(6): 1230-1235 (2011) - [j3]Hai-Tao Zhang, Michael Z. Q. Chen, Guy-Bart Stan:
Fast Consensus Via Predictive Pinning Control. IEEE Trans. Circuits Syst. I Regul. Pap. 58-I(9): 2247-2258 (2011) - [c11]Vishwesh V. Kulkarni, Marc D. Riedel, Guy-Bart Stan:
Networks of passive oscillators. Allerton 2011: 559-565 - [c10]Ye Yuan, Guy-Bart Stan, Mauricio Barahona, Ling Shi, Jorge M. Gonçalves:
Decentralised minimal-time consensus. CDC/ECC 2011: 4282-4289 - 2010
- [c9]Ye Yuan, Guy-Bart Stan, Sean Warnick, Jorge M. Gonçalves:
Robust dynamical network reconstruction. CDC 2010: 810-815 - [c8]Abdullah Omar Hamadeh, Guy-Bart Stan, Jorge M. Gonçalves:
Constructive synchronization of networked feedback systems. CDC 2010: 6710-6715
2000 – 2009
- 2009
- [c7]Ye Yuan, Guy-Bart Vincent Stan, Ling Shi, Jorge M. Gonçalves:
Decentralised final value theorem for discrete-time LTI systems with application to minimal-time distributed consensus. CDC 2009: 2664-2669 - [c6]Ye Yuan, Guy-Bart Vincent Stan, Sean Warnick, Jorge M. Gonçalves:
Minimal dynamical structure realisations with application to network reconstruction from data. CDC 2009: 4808-4813 - 2008
- [c5]Russell Howes, Lee John Eccleston, Jorge M. Gonçalves, Guy-Bart Stan, Sean Warnick:
Dynamical structure analysis of sparsity and minimality heuristics for reconstruction of biochemical networks. CDC 2008: 173-178 - [c4]Abdullah Omar Hamadeh, Guy-Bart Stan, Jorge M. Gonçalves:
Robust synchronization in networks of cyclic feedback systems. CDC 2008: 5268-5273 - 2007
- [j2]Guy-Bart Stan, Rodolphe Sepulchre:
Analysis of Interconnected Oscillators by Dissipativity Theory. IEEE Trans. Autom. Control. 52(2): 256-270 (2007) - [c3]Guy-Bart Stan, Abdullah Omar Hamadeh, Rodolphe Sepulchre, Jorge M. Gonçalves:
Output synchronization in networks of cyclic biochemical oscillators. ACC 2007: 3973-3978 - 2006
- [c2]Damien Ernst, Guy-Bart Stan, Jorge M. Gonçalves, Louis Wehenkel:
Clinical data based optimal STI strategies for HIV: a reinforcement learning approach. CDC 2006: 667-672 - 2005
- [j1]Rodolphe Sepulchre, Guy-Bart Stan:
Feedback mechanisms for global oscillations in Lure systems. Syst. Control. Lett. 54(8): 809-818 (2005) - 2003
- [c1]Guy-Bart Stan, Rodolphe Sepulchre:
Dissipativity characterization of a class of oscillators and networks of oscillators. CDC 2003: 4169-4173
Coauthor Index
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