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2020 – today
- 2025
[j27]Michele Ferrari, Daniele D'Agostino
, Jacopo Aguzzi, Simone Marini:
Underwater Mediterranean image analysis based on the compute continuum paradigm. Future Gener. Comput. Syst. 162: 107481 (2025)- 2024
- [j26]Luciano Ortenzi, Jacopo Aguzzi, Corrado Costa, Simone Marini, Daniele D'Agostino, Laurenz Thomsen, Fabio C. De Leo, Paulo V. Correa, Damianos Chatzievangelou:
Automated species classification and counting by deep-sea mobile crawler platforms using YOLO. Ecol. Informatics 82: 102788 (2024) - [c31]Chaoyue Sun, Yiyang Liu, Christina Parisi, Rebecca Fisk-Hoffman, Marco Salemi, Ruogu Fang, Brandi Danforth, Mattia Prosperi, Simone Marini:
Learning on Forecasting HIV Epidemic Based on Individuals' Contact Networks. BIOSTEC (2) 2024: 103-111 - [c30]Mattia Prosperi, Simone Marini, Christina Boucher:
An Average-Case Efficient Two-Stage Algorithm for Enumerating All Longest Common Substrings of Minimum Length $k$ Between Genome Pairs. ICHI 2024: 93-102 - [c29]Michael Aaron G. Sy, Mattia Prosperi, Mohammadali Serajian, Christina Boucher, Panayotis Takis Benos, Simone Marini:
Prediction of A. Baumannii Amikacin Resistance in Clinical Metagenomics. MIE 2024: 212-213 - 2023
- [j25]Nathalie Bonin, Enrique Doster, Hannah Worley, Lee J. Pinnell, Jonathan E. Bravo, Peter Ferm, Simone Marini, Mattia Prosperi, Noelle R. Noyes, Paul S. Morley, Christina Boucher:
MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing. Nucleic Acids Res. 51(D1): 744-752 (2023) - [j24]Vanesa López-Vázquez, José Manuel López-Guede, Simone Marini, Emanuela Fanelli, Espen Johnsen, Jacopo Aguzzi:
Correction: Lopez-Vazquez et al. Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories. Sensors 2020, 20, 726. Sensors 23(1): 16 (2023) - [c28]Inyoung Jun, Scott A. Cohen, Sarah E. Ser, Simone Marini, Robert J. Lucero, Jiang Bian, Mattia Prosperi:
Optimizing Dynamic Antibiotic Treatment Strategies against Invasive Methicillin-Resistant Staphylococcus Aureus Infections using Causal Survival Forests and G-Formula on Statewide Electronic Health Record Data. CDPD 2023: 98-115 - 2022
- [j23]Mattia Prosperi, Christina Boucher, Jiang Bian, Simone Marini:
Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions. Artif. Intell. Medicine 130: 102326 (2022) - [j22]Simone Marini, Rodrigo A. Mora, Christina Boucher, Noelle Robertson Noyes, Mattia Prosperi:
Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencing. Briefings Bioinform. 23(2) (2022) - [j21]Simone Marini, Carla Mavian, Alberto Riva, Mattia Prosperi, Marco Salemi, Brittany Rife Magalis:
Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics. Bioinform. 38(3): 856-860 (2022) - [c27]Mattia Prosperi, Jie Xu, Jingchuan Serena Guo, Jiang Bian, Wei-Han William Chen, Shantrel Canidate, Simone Marini, Mo Wang:
Identification of Social and Racial Disparities in Risk of HIV Infection in Florida using Causal AI Methods. BIBM 2022: 2934-2939 - [c26]Mattia Prosperi, Brittany Rife Magalis, Simone Marini, Marco Salemi:
Transmission cluster characteristics of global, regional, and lineage-specific SARS-CoV-2 phylogenies. BIBM 2022: 2940-2944 - [c25]Giovanna Nicora, Simone Marini, Marco Salemi, Riccardo Bellazzi:
Dynamic Prediction of Non-Neutral SARS-Cov-2 Variants Using Incremental Machine Learning. MIE 2022: 654-658 - [i7]Inyoung Jun, Simone Marini, Christina Boucher, J. Glenn Morris, Jiang Bian, Mattia Prosperi:
Joint Application of the Target Trial Causal Framework and Machine Learning Modeling to Optimize Antibiotic Therapy: Use Case on Acute Bacterial Skin and Skin Structure Infections due to Methicillin-resistant Staphylococcus aureus. CoRR abs/2207.07458 (2022) - 2021
- [j20]Mattia Prosperi, Simone Marini, Christina Boucher:
Fast and exact quantification of motif occurrences in biological sequences. BMC Bioinform. 22(1): 445 (2021) - [j19]Jacopo Aguzzi, Corrado Costa, Marcello Calisti, Fabrizio Vecchi, Lewis Dartnell, Valerio Funari, Peter Weiss, Kathrin Nowak, Sergio Stefanni, Damianos Chatzievangelou, Roberto Danovaro, Simone Marini, Helena Gomes:
Research Trends and Future Perspectives in Marine Biomimicking Robotics. Sensors 21(11): 3778 (2021) - [c24]Mattia Prosperi, Simone Marini:
KARGA: Multi-platform Toolkit for k-mer-based Antibiotic Resistance Gene Analysis of High-throughput Sequencing Data. BHI 2021: 1-4 - [i6]Mattia Prosperi, Simone Marini, Christina Boucher, Jiang Bian:
Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions. CoRR abs/2107.03383 (2021) - 2020
- [j18]Vanesa López-Vázquez, José Manuel López-Guede, Simone Marini, Emanuela Fanelli, Espen Johnsen, Jacopo Aguzzi:
Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories. Sensors 20(3): 726 (2020) - [j17]Jacopo Aguzzi, Jan Albiez, Sascha Flögel, Olav Rune Godø, Endre Grimsbø, Simone Marini, Olaf Pfannkuche, Erik Rodríguez, Laurenz Thomsen, Terje Torkelsen, Javier Valencia, Vanesa López-Vázquez, Henning Wehde, Guosong Zhang:
A Flexible Autonomous Robotic Observatory Infrastructure for Bentho-Pelagic Monitoring. Sensors 20(6): 1614 (2020) - [j16]Jacopo Aguzzi, Damianos Chatzievangelou, Marco Francescangeli, Simone Marini, Federico Bonofiglio, Joaquín del Río, Roberto Danovaro:
The Hierarchic Treatment of Marine Ecological Information from Spatial Networks of Benthic Platforms. Sensors 20(6): 1751 (2020) - [j15]Emanuela Fanelli, Jacopo Aguzzi, Simone Marini, Joaquín del Río, Marc Nogueras, Simonepietro Canese, Sergio Stefanni, Roberto Danovaro, Fabio Conversano:
Towards Naples Ecological REsearch for Augmented Observatories (NEREA): The NEREA-Fix Module, a Stand-Alone Platform for Long-Term Deep-Sea Ecosystem Monitoring. Sensors 20(10): 2911 (2020) - [j14]Ander Zuazo, Jordi Grinyó, Vanesa López-Vázquez, Erik Rodríguez, Corrado Costa, Luciano Ortenzi, Sascha Flögel, Javier Valencia, Simone Marini, Guosong Zhang, Henning Wehde, Jacopo Aguzzi:
An Automated Pipeline for Image Processing and Data Treatment to Track Activity Rhythms of Paragorgia arborea in Relation to Hydrographic Conditions. Sensors 20(21): 6281 (2020)
2010 – 2019
- 2019
- [j13]Yu Bao, Simone Marini, Takeyuki Tamura, Mayumi Kamada, Shingo Maegawa, Hiroshi Hosokawa, Jiangning Song, Tatsuya Akutsu:
Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features. Briefings Bioinform. 20(5): 1669-1684 (2019) - [j12]Simone Marini, Francesca Vitali, Sara Rampazzi, Andrea Demartini, Tatsuya Akutsu:
Protease target prediction via matrix factorization. Bioinform. 35(6): 923-929 (2019) - [c23]Giovanna Nicora, Simone Marini, Ivan Limongelli, Ettore Rizzo, Stefano Montoli, Francesca Floriana Tricomi, Riccardo Bellazzi:
A Semi-supervised Learning Approach for Pan-Cancer Somatic Genomic Variant Classification. AIME 2019: 42-46 - [c22]Dmitry A. Konovalov, Alzayat Saleh, Michael Bradley, Mangalam Sankupellay, Simone Marini, Marcus Sheaves:
Underwater Fish Detection with Weak Multi-Domain Supervision. IJCNN 2019: 1-8 - [i5]Dmitry A. Konovalov, Alzayat Saleh, Michael Bradley, Mangalam Sankupellay, Simone Marini, Marcus Sheaves:
Underwater Fish Detection with Weak Multi-Domain Supervision. CoRR abs/1905.10708 (2019) - 2018
- [j11]Enea Parimbelli, Simone Marini, Lucia Sacchi, Riccardo Bellazzi:
Patient similarity for precision medicine: A systematic review. J. Biomed. Informatics 83: 87-96 (2018) - 2017
- [j10]Simone Marini, Nelson Nazzicari, Filippo Biscarini, Guang-Zhong Wang:
Dscam1 web server: online prediction of Dscam1 self- and hetero-affinity. Bioinform. 33(12): 1879-1880 (2017) - [i4]Danila Vella, Simone Marini, Francesca Vitali, Riccardo Bellazzi:
MTopGO: a tool for module identification in PPI Networks. PeerJ Prepr. 5: e3229 (2017) - 2016
- [j9]Lorenzo Corgnati, Simone Marini, Luca Mazzei, Ennio Ottaviani, Stefano Aliani, Alessandra Conversi, Annalisa Griffa:
Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton. Sensors 16(12): 2124 (2016) - [c21]Simone Marini, Arianna Dagliati, Lucia Sacchi, Riccardo Bellazzi:
Learning T2D Evolving Complexity from EMR and Administrative Data by Means of Continuous Time Bayesian Networks. HEALTHINF 2016: 338-344 - 2015
- [j8]Ivan Limongelli, Simone Marini, Riccardo Bellazzi:
PaPI: pseudo amino acid composition to score human protein-coding variants. BMC Bioinform. 16: 123:1-123:14 (2015) - [j7]Simone Marini, Emanuele Trifoglio, Nicola Barbarini, Francesco Sambo, Barbara Di Camillo, Alberto Malovini, Marco Manfrini, Claudio Cobelli, Riccardo Bellazzi:
A Dynamic Bayesian Network model for long-term simulation of clinical complications in type 1 diabetes. J. Biomed. Informatics 57: 369-376 (2015) - [c20]Simone Marini, Ivan Limongelli, Ettore Rizzo, Tan Da, Riccardo Bellazzi:
A Genomic Data Fusion Framework to Exploit Rare and Common Variants for Association Discovery. AIME 2015: 101-105 - [c19]Maria Francesca Zini, Nadia Pisanti, E. Biasci, A. Podda, V. Mey, F. Piras, G. L. L'Abbate, Simone Marini, D. Fratta, S. Bonaretti, S. Trasciatti:
Preclinical Tests for Cerebral Stroke. ASONAM 2015: 1063-1067 - 2014
- [c18]Lorenzo Corgnati, Luca Mazzei, Simone Marini, Stefano Aliani, Alessandra Conversi, Annalisa Griffa, Bruno Isoppo, Ennio Ottaviani:
Automated Gelatinous Zooplankton Acquisition and Recognition. CVAUI@ICPR 2014: 1-8 - [c17]Luca Mazzei, Simone Marini, Jessica Craig, Jacopo Aguzzi, Emanuela Fanelli, Imants G. Priede:
Automated Video Imaging System for Counting Deep-Sea Bioluminescence Organisms Events. CVAUI@ICPR 2014: 57-64 - 2012
- [c16]Simone Marini, Alessandra Conversi:
Understanding Zooplankton Long Term Variability through Genetic Programming. EvoBIO 2012: 50-61 - 2011
- [j6]Marco Attene, Simone Marini, Michela Spagnuolo, Bianca Falcidieno:
Part-in-whole 3D shape matching and docking. Vis. Comput. 27(11): 991-1004 (2011) - [j5]Simone Marini, Giuseppe Patanè, Michela Spagnuolo, Bianca Falcidieno:
Spectral feature selection for shape characterization and classification. Vis. Comput. 27(11): 1005-1019 (2011) - [c15]Stephan Kiefer, Jochen Rauch, Riccardo Albertoni, Marco Attene, Franca Giannini, Simone Marini, Luc Schneider, Carlos Mesquita, Xin Xing:
An Ontology-Driven Search Module for Accessing Chronic Pathology Literature. OTM Workshops 2011: 382-391 - [i3]Stephan Kiefer, Jochen Rauch, Riccardo Albertoni, Marco Attene, Franca Giannini, Simone Marini, Luc Schneider, Carlos Mesquita, Xin Xing, Michael Lawo:
The CHRONIOUS Ontology-Driven Search Tool: Enabling Access to Focused and Up-to-Date Healthcare Literature. CoRR abs/1110.2400 (2011) - 2010
- [j4]Alfredo Ferreira, Simone Marini, Marco Attene, Manuel J. Fonseca, Michela Spagnuolo, Joaquim A. Jorge, Bianca Falcidieno:
Thesaurus-based 3D Object Retrieval with Part-in-Whole Matching. Int. J. Comput. Vis. 89(2-3): 327-347 (2010) - [c14]Marco Attene, Simone Marini, Michela Spagnuolo, Bianca Falcidieno:
The Fast Reject Schema for Part-in-Whole 3D Shape Matching. 3DOR@Eurographics 2010: 23-30 - [c13]Simone Marini, Giuseppe Patanè, Michela Spagnuolo, Bianca Falcidieno:
Feature Selection for Enhanced Spectral Shape Comparison . 3DOR@Eurographics 2010: 31-38
2000 – 2009
- 2009
- [c12]J. Hartveldt, Michela Spagnuolo, Apostolos Axenopoulos, Silvia Biasotti, Petros Daras, Helin Dutagaci, Takahiko Furuya, Afzal Godil, Xiaolan Li, Athanasios Mademlis, Simone Marini, Thibault Napoléon, Ryutarou Ohbuchi, Masaki Tezuka:
SHREC'09 Track: Structural Shape Retrieval on Watertight Models. 3DOR@Eurographics 2009: 77-83 - [c11]Daniela Giorgi, Marco Attene, Giuseppe Patanè, Simone Marini, Corrado Pizzi, Silvia Biasotti, Michela Spagnuolo, Bianca Falcidieno, Marco Corvi, L. Usai, L. Roncarolo, Giovanni Garibotto:
A Critical Assessment of 2D and 3D Face Recognition Algorithms. AVSS 2009: 79-84 - 2008
- [c10]Daniela Giorgi, Simone Marini:
SHape REtrieval contest 2008: Classification of watertight models. Shape Modeling International 2008: 219-220 - 2007
- [j3]Simone Marini, Michela Spagnuolo, Bianca Falcidieno:
Structural Shape Prototypes for the Automatic Classification of 3D Objects. IEEE Computer Graphics and Applications 27(4): 28-37 (2007) - [c9]Silvia Biasotti, Bianca Falcidieno, Patrizio Frosini, Daniela Giorgi, Claudia Landi, Simone Marini, Giuseppe Patanè, Michela Spagnuolo:
3D Shape Description and Matching Based on Properties of Real Functions. Eurographics (Tutorials) 2007: 949-998 - [c8]Silvia Biasotti, Daniela Giorgi, Simone Marini, Michela Spagnuolo, Bianca Falcidieno:
3D Classification Via Structural Prototypes. SAMT 2007: 140-143 - 2006
- [j2]Silvia Biasotti, Simone Marini, Michela Spagnuolo, Bianca Falcidieno:
Sub-part correspondence by structural descriptors of 3D shapes. Comput. Aided Des. 38(9): 1002-1019 (2006) - [c7]Silvia Biasotti, Simone Marini:
Sub-part correspondence using structure and geometry. Eurographics Italian Chapter Conference 2006: 23-28 - [c6]Silvia Biasotti, Daniela Giorgi, Simone Marini, Michela Spagnuolo, Bianca Falcidieno:
A Comparison Framework for 3D Object Classification Methods. MRCS 2006: 314-321 - [i2]Simone Marini, Silvia Biasotti, Bianca Falcidieno:
Partial Matching by Structural Descriptors. Content-Based Retrieval 2006 - [i1]Michela Spagnuolo, Silvia Biasotti, Bianca Falcidieno, Simone Marini:
Structural Descriptors for 3D Shapes. Content-Based Retrieval 2006 - 2005
- [b1]Simone Marini:
3D shape similarity through structural descriptors. University of Genoa, Italy, 2005 - [j1]Silvia Biasotti, Simone Marini:
3D object comparison based on shape descriptors. Int. J. Comput. Appl. Technol. 23(2-4): 57-69 (2005) - [c5]Simone Marini, Michela Spagnuolo, Bianca Falcidieno:
From Exact to Approximate Maximum Common Subgraph. GbRPR 2005: 263-272 - 2003
- [c4]Silvia Biasotti, Simone Marini, Michela Mortara, Giuseppe Patanè, Michela Spagnuolo, Bianca Falcidieno:
3D Shape Matching through Topological Structures. DGCI 2003: 194-203 - [c3]Silvia Biasotti, Simone Marini, Michela Mortara, Giuseppe Patanè:
An overview on properties and efficacy of topological skeletons in Shape Modelling. Shape Modeling International 2003: 245-256, 297 - 2000
- [c2]Simone Marini, Maurizio Martelli, Viviana Mascardi, Floriano Zini:
Specification of Heterogeneous Agent Architectures. ATAL 2000: 275-289 - [c1]Simone Marini, Maurizio Martelli, Viviana Mascardi, Floriano Zini:
HEMASL: A Flexible Language to Specify Heterogeneous Agents. WOA 2000: 76-81
Coauthor Index
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last updated on 2024-10-21 20:25 CEST by the dblp team
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