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2020 – today
- 2024
[j24]Pietro Di Lena, Christine Nardini, Matteo Pellegrini:
Editorial: Computational methods for analysis of DNA methylation data, volume II. Frontiers Bioinform. 4 (2024)- [j23]Lajoyce Mboning, Liudmilla Rubbi, Michael Thompson, Louis-S. Bouchard, Matteo Pellegrini:
BayesAge: A maximum likelihood algorithm to predict epigenetic age. Frontiers Bioinform. 4 (2024) - [c6]Elena Benzoni, Matteo Pellegrini, Francesco Dedè, Marco Passarotti:
Representing Compounding with OntoLex. An Evaluation of Vocabularies for Word Formation Resources. LREC/COLING 2024: 13958-13969 - 2023
- [j22]Colin Farrell, Chanyue Hu, Kalsuda Lapborisuth, Kyle Pu, Sagi Snir, Matteo Pellegrini:
Identifying epigenetic aging moderators using the epigenetic pacemaker. Frontiers Bioinform. 3 (2023) - [c5]Martina Rosola, Simona Frenda, Alessandra Teresa Cignarella, Matteo Pellegrini, Andrea Marra, Mara Floris:
Beyond Obscuration and Visibility: Thoughts on the Different Strategies of Gender-Fair Language in Italian. CLiC-it 2023 - [i1]Pavan Holur, Kenneth C. Enevoldsen, Lajoyce Mboning, Thalia Georgiou, Louis-S. Bouchard, Matteo Pellegrini, Vwani Roychowdhury:
Embed-Search-Align: DNA Sequence Alignment using Transformer Models. CoRR abs/2309.11087 (2023) - 2022
- [j21]Pietro Di Lena, Christine Nardini, Matteo Pellegrini:
Editorial: Computational Methods for Analysis of DNA Methylation Data. Frontiers Bioinform. 2 (2022) - [j20]Noemi del-Toro
, Anjali Shrivastava, Eliot Ragueneau, Birgit Meldal, Colin W. Combe, Elisabet Barrera, Livia Perfetto, Karyn How, Prashansa Ratan, Gautam Shirodkar, Odilia Lu, Bálint Mészáros, Xavier Watkins, Sangya Pundir, Luana Licata, Marta Iannuccelli, Matteo Pellegrini, Maria Jesus Martin, Simona Panni, Margaret J. Duesbury, Sylvain D. Vallet, Juri Rappsilber, Sylvie Ricard-Blum, Gianni Cesareni, Lukasz Salwínski, Sandra E. Orchard, Pablo Porras, Kalpana Panneerselvam, Henning Hermjakob:
The IntAct database: efficient access to fine-grained molecular interaction data. Nucleic Acids Res. 50(D1): 648-653 (2022) - [j19]Matteo Pellegrini, Marco Passarotti, Eleonora Litta, Francesco Mambrini, Giovanni Moretti, Claudia Corbetta, Martina Verdelli:
Enhancing Derivational Information on Latin Lemmas in the LiLa Knowledge Base. A Structural and Diachronic Extension. Prague Bull. Math. Linguistics 119: 67-92 (2022) - [c4]Christian Chiarcos, Katerina Gkirtzou, Anas Fahad Khan, Penny Labropoulou, Marco Passarotti, Matteo Pellegrini:
Computational Morphology with OntoLex-Morph. LDL@LREC 2022: 78-86 - [c3]Francesco Mambrini, Marco Passarotti, Giovanni Moretti, Matteo Pellegrini:
The Index Thomisticus Treebank as Linked Data in the LiLa Knowledge Base. LREC 2022: 4022-4029 - 2021
- [j18]Brian B. Nadel, Meritxell Oliva, Benjamin L. Shou, Keith Mitchell, Feiyang Ma, Dennis J. Montoya, Alice Mouton, Sarah Kim-Hellmuth, Barbara E. Stranger, Matteo Pellegrini, Serghei Mangul:
Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samples. Briefings Bioinform. 22(6) (2021) - 2020
- [j17]Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret J. Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, Kalpana Panneerselvam, Simona Panni, N. Rahimzadeh, Sylvie Ricard-Blum, Lukasz Salwínski, Anjali Shrivastava, Gianni Cesareni, Matteo Pellegrini, Sandra E. Orchard, Igor Jurisica, Henning Hermjakob, Pablo Porras:
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions. Database J. Biol. Databases Curation 2020 (2020) - [j16]Feiyang Ma, Matteo Pellegrini:
ACTINN: automated identification of cell types in single cell RNA sequencing. Bioinform. 36(2): 533-538 (2020) - [j15]Colin Farrell, Sagi Snir, Matteo Pellegrini:
The Epigenetic Pacemaker: modeling epigenetic states under an evolutionary framework. Bioinform. 36(17): 4662-4663 (2020) - [c2]Matteo Pellegrini, Alessandra Teresa Cignarella:
(Stem and Word) Predictability in Italian Verb Paradigms: An Entropy-Based Study Exploiting the New Resource LeFFI. CLiC-it 2020
2010 – 2019
- 2019
- [j14]Wei Liu, Matteo Pellegrini, Aiping Wu:
Identification of Bridging Centrality in Complex Networks. IEEE Access 7: 93123-93130 (2019) - 2018
- [j13]Weilong Guo, Ping Zhu, Matteo Pellegrini, Michael Q. Zhang, Xiangfeng Wang, Zhongfu Ni:
CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data. Bioinform. 34(3): 381-387 (2018) - [c1]Matteo Pellegrini, Marco Passarotti:
LatInfLexi: an Inflected Lexicon of Latin Verbs. CLiC-it 2018 - 2016
- [j12]Sagi Snir, Bridgett M. Vonholdt, Matteo Pellegrini:
A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic Aging. PLoS Comput. Biol. 12(11) (2016) - 2014
- [j11]Jianchao Yao, Kelvin Xi Zhang, Melissa Kramer, Matteo Pellegrini, W. Richard McCombie:
FamAnn: an automated variant annotation pipeline to facilitate target discovery for family-based sequencing studies. Bioinform. 30(8): 1175-1176 (2014) - [j10]Eran Elhaik, Matteo Pellegrini, Tatiana V. Tatarinova:
Gene expression and nucleotide composition are associated with genic methylation level in Oryza sativa. BMC Bioinform. 15: 23 (2014) - 2011
- [j9]David López, David Casero, Shawn Cokus, Sabeeha S. Merchant, Matteo Pellegrini:
Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data. BMC Bioinform. 12: 282 (2011) - [j8]Aliz R. Rao, Matteo Pellegrini:
Regulation of the yeast metabolic cycle by transcription factors with periodic activities. BMC Syst. Biol. 5: 160 (2011) - 2010
- [j7]Pao-Yang Chen, Shawn Cokus, Matteo Pellegrini:
BS Seeker: precise mapping for bisulfite sequencing. BMC Bioinform. 11: 203 (2010)
2000 – 2009
- 2009
- [j6]Einat Sprinzak, Shawn Cokus, Todd O. Yeates, David S. Eisenberg, Matteo Pellegrini:
Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expression. BMC Syst. Biol. 3: 115 (2009) - [j5]Debopriya Das, Matteo Pellegrini, Joe W. Gray:
A Primer on Regression Methods for Decoding cis-Regulatory Logic. PLoS Comput. Biol. 5(1) (2009) - 2008
- [j4]Robert Riley, Matteo Pellegrini, David S. Eisenberg:
Identifying Cognate Binding Pairs among a Large Set of Paralogs: The Case of PE/PPE Proteins of Mycobacterium tuberculosis. PLoS Comput. Biol. 4(9) (2008) - 2007
- [j3]Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini:
An improved method for identifying functionally linked proteins using phylogenetic profiles. BMC Bioinform. 8(S-4) (2007) - 2006
- [j2]Shawn Cokus, Sherri Rose, David R. Haynor, Niels Grønbech-Jensen, Matteo Pellegrini:
Modelling the network of cell cycle transcription factors in the yeast Saccharomyces cerevisiae. BMC Bioinform. 7: 381 (2006) - 2003
- [j1]Jason Gertz, Georgiy Elfond, Anna Shustrova, Matt Weisinger, Matteo Pellegrini, Shawn Cokus, Bruce Rothschild:
Inferring protein interactions from phylogenetic distance matrices. Bioinform. 19(16): 2039-2045 (2003)
Coauthor Index
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last updated on 2024-10-07 21:24 CEST by the dblp team
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