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ORCIDSagi Snir
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2020 – today
- 2024
[j38]Mrinmoy Saha Roddur, Sagi Snir, Mohammed El-Kebir
:
Enforcing Temporal Consistency in Migration History Inference. J. Comput. Biol. 31(5): 396-415 (2024)- [c27]Meir Goldenberg, Loay Mualem, Amit Shahar, Sagi Snir, Adi Akavia:
Privacy Preserving Epigenetic PaceMaker: Stronger Privacy and Improved Efficiency. RECOMB 2024: 412-416 - [c26]Yoav Dvir, Shelly Brezner, Sagi Snir:
Gene-Adjacency-Based Phylogenetics Under a Stochastic Gain-Loss Model. RECOMB-CG 2024: 69-85 - [c25]Sagi Snir, Yuri I. Wolf, Shelly Brezner, Eugene V. Koonin, Mike A. Steel:
On the Distribution of Synteny Blocks Under a Neutral Model of Genome Dynamics. RECOMB-CG 2024: 173-188 - 2023
- [j37]Colin Farrell, Chanyue Hu, Kalsuda Lapborisuth, Kyle Pu, Sagi Snir, Matteo Pellegrini:
Identifying epigenetic aging moderators using the epigenetic pacemaker. Frontiers Bioinform. 3 (2023) - [c24]Guy Katriel, Udi Mahanaymi, Christoph Koutschan, Doron Zeilberger, Mike A. Steel, Sagi Snir:
Using Generating Functions to Prove Additivity of Gene-Neighborhood Based Phylogenetics - Extended Abstract. ISBRA 2023: 120-135 - [c23]Mrinmoy Saha Roddur, Sagi Snir, Mohammed El-Kebir:
Inferring Temporally Consistent Migration Histories. WABI 2023: 9:1-9:22 - 2022
- [j36]Sagi Snir, Osnat Weissberg, Raphael Yuster:
On the quartet distance given partial information. J. Graph Theory 100(2): 252-269 (2022) - [c22]Meir Goldenberg, Sagi Snir, Adi Akavia:
Private Epigenetic PaceMaker Detector Using Homomorphic Encryption - Extended Abstract. ISBRA 2022: 52-61 - 2021
- [i3]Sagi Snir, Osnat Weissberg, Raphael Yuster:
On the quartet distance given partial information. CoRR abs/2111.13101 (2021) - 2020
- [j35]Colin Farrell, Sagi Snir, Matteo Pellegrini:
The Epigenetic Pacemaker: modeling epigenetic states under an evolutionary framework. Bioinform. 36(17): 4662-4663 (2020) - [j34]Viachaslau Tsyvina, Alex Zelikovsky, Sagi Snir, Pavel Skums:
Inference of mutability landscapes of tumors from single cell sequencing data. PLoS Comput. Biol. 16(11) (2020)
2010 – 2019
- 2019
- [j33]Sagi Snir, Ben Yohay:
Prokaryotic evolutionary mechanisms accelerate learning. Discret. Appl. Math. 258: 222-234 (2019) - [j32]Eliran Avni, Sagi Snir:
A New Quartet-Based Statistical Method for Comparing Sets of Gene Trees Is Developed Using a Generalized Hoeffding Inequality. J. Comput. Biol. 26(1): 27-37 (2019) - [j31]Ben Yohay, Sagi Snir:
Extending the Evolvability Model to the Prokaryotic World: Simulations and Results on Real Data. J. Comput. Biol. 26(8): 794-805 (2019) - [j30]Sagi Snir:
Bounds on Identification of Genome Evolution Pacemakers. J. Comput. Biol. 26(8): 806-821 (2019) - [c21]Sagi Snir:
Greedy Partition Distance Under Stochastic Models - Analytic Results. ISBRA 2019: 257-269 - 2018
- [c20]Sagi Snir:
Bounds on Identification of Genome Evolution Pacemakers. ISBRA 2018: 51-62 - [c19]Sagi Snir, Ben Yohay:
Extending the Evolvability Model to the Prokaryotic World: Simulations and Results on Real Data. ISBRA 2018: 299-313 - [c18]Thomas Dencker, Chris-André Leimeister, Michael Gerth, Christoph Bleidorn, Sagi Snir, Burkhard Morgenstern:
Multi-SpaM: A Maximum-Likelihood Approach to Phylogeny Reconstruction Using Multiple Spaced-Word Matches and Quartet Trees. RECOMB-CG 2018: 227-241 - 2017
- [j29]Dat Duong, Lisa Gai, Sagi Snir, Eun Yong Kang, Buhm Han, Jae Hoon Sul, Eleazar Eskin:
Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes. Bioinform. 33(14): i67-i74 (2017) - 2016
- [j28]Sagi Snir, Bridgett M. Vonholdt, Matteo Pellegrini:
A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic Aging. PLoS Comput. Biol. 12(11) (2016) - 2015
- [j27]Zhanyong Wang, Jae Hoon Sul, Sagi Snir, José Antonio Lozano, Eleazar Eskin:
Gene-Gene Interactions Detection Using a Two-stage Model. J. Comput. Biol. 22(6): 563-576 (2015) - [j26]Orit Adato, Noga Ninyo, Uri Gophna, Sagi Snir:
Detecting Horizontal Gene Transfer between Closely Related Taxa. PLoS Comput. Biol. 11(10) (2015) - 2014
- [j25]Sagi Snir:
On the number of genomic pacemakers: a geometric approach. Algorithms Mol. Biol. 9: 26 (2014) - [j24]Noga Alon, Sagi Snir, Raphael Yuster:
On the Compatibility of Quartet Trees. SIAM J. Discret. Math. 28(3): 1493-1507 (2014) - [c17]Zhanyong Wang, Jae Hoon Sul, Sagi Snir, José Antonio Lozano, Eleazar Eskin:
Gene-Gene Interactions Detection Using a Two-Stage Model. RECOMB 2014: 340-355 - [c16]Noga Alon, Sagi Snir, Raphael Yuster:
On the compatibility of quartet trees. SODA 2014: 535-545 - [c15]Sagi Snir:
Pacemaker Partition Identification. WABI 2014: 281-295 - 2013
- [j23]Sebastien Roch, Sagi Snir:
Recovering the Treelike Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis. J. Comput. Biol. 20(2): 93-112 (2013) - 2012
- [j22]Sagi Snir, Yuri I. Wolf, Eugene V. Koonin:
Universal Pacemaker of Genome Evolution. PLoS Comput. Biol. 8(11) (2012) - [j21]Ilan Gronau, Shlomo Moran, Sagi Snir:
Fast and reliable reconstruction of phylogenetic trees with indistinguishable edges. Random Struct. Algorithms 40(3): 350-384 (2012) - [j20]Sagi Snir, Raphael Yuster:
Reconstructing Approximate Phylogenetic Trees from Quartet Samples. SIAM J. Comput. 41(6): 1466-1480 (2012) - [c14]Sebastien Roch, Sagi Snir:
Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis. RECOMB 2012: 224-238 - [i2]Sebastien Roch, Sagi Snir:
Recovering the tree-like trend of evolution despite extensive lateral genetic transfer: A probabilistic analysis. CoRR abs/1206.3520 (2012) - 2011
- [j19]Sagi Snir, Lior Pachter:
Tracing the Most Parsimonious Indel History. J. Comput. Biol. 18(8): 967-986 (2011) - [j18]Sagi Snir, Raphael Yuster:
A Linear Time Approximation Scheme for Maximum Quartet Consistency on Sparse Sampled Inputs. SIAM J. Discret. Math. 25(4): 1722-1736 (2011) - [j17]Shlomo Moran, Sagi Snir, Wing-Kin Sung:
Partial convex recolorings of trees and galled networks: Tight upper and lower bounds. ACM Trans. Algorithms 7(4): 42:1-42:20 (2011) - [c13]Sagi Snir, Raphael Yuster:
A Linear Time Approximation Scheme for Maximum Quartet Consistency on Sparse Sampled Inputs. APPROX-RANDOM 2011: 339-350 - 2010
- [j16]Sagi Snir, Edward N. Trifonov:
A Novel Technique for Detecting Putative Horizontal Gene Transfer in the Sequence Space. J. Comput. Biol. 17(11): 1535-1548 (2010) - [j15]Sagi Snir, Satish Rao:
Quartets MaxCut: A Divide and Conquer Quartets Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 7(4): 704-718 (2010) - [c12]Sagi Snir, Raphael Yuster:
Reconstructing Approximate Phylogenetic Trees from Quartet Samples. SODA 2010: 1035-1044
2000 – 2009
- 2009
- [j14]Sagi Snir, Tamir Tuller:
The Net-HMM Approach: Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models. J. Bioinform. Comput. Biol. 7(4): 625-644 (2009) - [j13]Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller:
Parsimony Score of Phylogenetic Networks: Hardness Results and a Linear-Time Heuristic. IEEE ACM Trans. Comput. Biol. Bioinform. 6(3): 495-505 (2009) - 2008
- [j12]Sagi Snir, Tandy J. Warnow, Satish Rao:
Short Quartet Puzzling: A New Quartet-Based Phylogeny Reconstruction Algorithm. J. Comput. Biol. 15(1): 91-103 (2008) - [j11]Shlomo Moran, Sagi Snir:
Convex recolorings of strings and trees: Definitions, hardness results and algorithms. J. Comput. Syst. Sci. 74(5): 850-869 (2008) - [j10]Michael D. Hendy, Sagi Snir:
Hadamard Conjugation for the Kimura 3ST Model: Combinatorial Proof Using Path Sets. IEEE ACM Trans. Comput. Biol. Bioinform. 5(3): 461-471 (2008) - [c11]Ilan Gronau, Shlomo Moran, Sagi Snir:
Fast and reliable reconstruction of phylogenetic trees with very short edges. SODA 2008: 379-388 - [c10]Sagi Snir, Tamir Tuller:
Novel Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models. WABI 2008: 354-368 - 2007
- [j9]Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller:
Efficient parsimony-based methods for phylogenetic network reconstruction. Bioinform. 23(2): 123-128 (2007) - [j8]Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller:
Maximum likelihood of phylogenetic networks. Bioinform. 23(8): 1046-1047 (2007) - [j7]Steven Skiena, Sagi Snir:
Restricting SBH ambiguity via restriction enzymes. Discret. Appl. Math. 155(6-7): 857-867 (2007) - [j6]Eleazar Eskin, Sagi Snir:
Incorporating homologues into Sequence Embeddings for protein Analysis. J. Bioinform. Comput. Biol. 5(3): 717-738 (2007) - [j5]Shlomo Moran, Sagi Snir:
Efficient approximation of convex recolorings. J. Comput. Syst. Sci. 73(7): 1078-1089 (2007) - [c9]Benny Chor, Michael R. Fellows, Mark A. Ragan, Igor Razgon, Frances A. Rosamond, Sagi Snir:
Connected Coloring Completion for General Graphs: Algorithms and Complexity. COCOON 2007: 75-85 - [c8]Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller:
A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance. ISBRA 2007: 61-72 - 2006
- [j4]Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller:
Maximum likelihood of phylogenetic networks. Bioinform. 22(21): 2604-2611 (2006) - [j3]Benny Chor, Amit Khetan, Sagi Snir:
Maximum Likelihood Molecular Clock Comb: Analytic Solutions. J. Comput. Biol. 13(3): 819-837 (2006) - [j2]Sagi Snir, Satish Rao:
Using Max Cut to Enhance Rooted Trees Consistency. IEEE ACM Trans. Comput. Biol. Bioinform. 3(4): 323-333 (2006) - [c7]Sagi Snir, Lior Pachter:
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes. RECOMB 2006: 265-280 - 2005
- [c6]Shlomo Moran, Sagi Snir:
Efficient Approximation of Convex Recolorings. APPROX-RANDOM 2005: 192-208 - [c5]Eleazar Eskin, Sagi Snir:
The Homology Kernel: A Biologically Motivated Sequence Embedding into Euclidean Space. CIBCB 2005: 179-186 - [c4]Shlomo Moran, Satish Rao, Sagi Snir:
Using Semi-definite Programming to Enhance Supertree Resolvability. WABI 2005: 89-103 - [c3]Shlomo Moran, Sagi Snir:
Convex Recolorings of Strings and Trees: Definitions, Hardness Results and Algorithms. WADS 2005: 218-232 - [i1]Shlomo Moran, Sagi Snir:
Efficient Approximation of Convex Recolorings. CoRR abs/cs/0505077 (2005) - 2004
- [b1]Sagi Snir:
Computational issues in phylogenetic reconstruction : analytic maximum likelihood solutions and convex recoloring. Technion - Israel Institute of Technology, Israel, 2004 - 2003
- [c2]Benny Chor, Amit Khetan, Sagi Snir:
Maximum likelihood on four taxa phylogenetic trees: analytic solutions. RECOMB 2003: 76-83 - 2002
- [c1]Steven Skiena, Sagi Snir:
Restricting SBH Ambiguity via Restriction Enzymes. WABI 2002: 404-417 - 2000
- [j1]Shlomo Moran, Sagi Snir:
Simple and efficient network decomposition and synchronization. Theor. Comput. Sci. 243(1-2): 217-241 (2000)
Coauthor Index
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