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2020 – today
- 2024
[j11]Mona Nourbakhsh, Kristine Degn, Astrid Saksager, Matteo Tiberti, Elena Papaleo:
Prediction of cancer driver genes and mutations: the potential of integrative computational frameworks. Briefings Bioinform. 25(2) (2024)- 2023
- [j10]Mona Nourbakhsh
, Astrid Saksager, Nikola Tom, Xi Steven Chen, Antonio Colaprico, Catharina Olsen, Matteo Tiberti, Elena Papaleo:
A workflow to study mechanistic indicators for driver gene prediction with Moonlight. Briefings Bioinform. 24(5) (2023) - [j9]Valentina Sora, Matteo Tiberti, Ludovica Beltrame, Deniz Dogan, Shahriyar Mahdi Robbani, Joshua Rubin, Elena Papaleo:
PyInteraph2 and PyInKnife2 to Analyze Networks in Protein Structural Ensembles. J. Chem. Inf. Model. 63(14): 4237-4245 (2023) - [j8]Kristine Degn, Ludovica Beltrame, Matteo Tiberti, Elena Papaleo:
PDBminer to Find and Annotate Protein Structures for Computational Analysis. J. Chem. Inf. Model. 63(23): 7274-7281 (2023) - 2022
- [j7]Matteo Tiberti, Thilde Terkelsen, Kristine Degn, Ludovica Beltrame, Tycho Canter Cremers, Isabelle da Piedade, Miriam Di Marco, Emiliano Maiani, Elena Papaleo:
MutateX: an automated pipeline for in silico saturation mutagenesis of protein structures and structural ensembles. Briefings Bioinform. 23(3) (2022)
2010 – 2019
- 2018
- [j6]Matteo Tiberti, Alessandro Pandini, Franca Fraternali, Arianna Fornili:
In silico identification of rescue sites by double force scanning. Bioinform. 34(2): 207-214 (2018) - 2017
- [j5]Shaima Hashem, Matteo Tiberti, Arianna Fornili:
Allosteric modulation of cardiac myosin dynamics by omecamtiv mecarbil. PLoS Comput. Biol. 13(11) (2017) - 2015
- [j4]Matteo Tiberti, Elena Papaleo, Tone Bengtsen, Wouter Boomsma, Kresten Lindorff-Larsen:
ENCORE: Software for Quantitative Ensemble Comparison. PLoS Comput. Biol. 11(10) (2015) - 2014
- [j3]Matteo Tiberti, Gaetano Invernizzi, Matteo Lambrughi, Yuval Inbar, Gideon Schreiber, Elena Papaleo:
PyInteraph: A Framework for the Analysis of Interaction Networks in Structural Ensembles of Proteins. J. Chem. Inf. Model. 54(5): 1537-1551 (2014) - [j2]Gaetano Invernizzi, Matteo Tiberti, Matteo Lambrughi, Kresten Lindorff-Larsen, Elena Papaleo:
Communication Routes in ARID Domains between Distal Residues in Helix 5 and the DNA-Binding Loops. PLoS Comput. Biol. 10(9) (2014) - 2012
- [j1]Marco Pasi, Matteo Tiberti, Alberto Arrigoni, Elena Papaleo:
xPyder: A PyMOL Plugin To Analyze Coupled Residues and Their Networks in Protein Structures. J. Chem. Inf. Model. 52(7): 1865-1874 (2012)
Coauthor Index
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