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2020 – today
- 2024
[i12]Pulkit Khandelwal, Michael Tran Duong, Constanza Fuentes, Amanda Denning, Winifred Trotman, Ranjit Ittyerah, Alejandra Bahena, Theresa Schuck, Marianna Gabrielyan, Karthik Prabhakaran, Daniel T. Ohm, Gabor Mizsei, John L. Robinson, Mónica Muñoz López, John A. Detre, Edward B. Lee, David J. Irwin, Corey McMillan, M. Dylan Tisdall, Sandhitsu R. Das, David A. Wolk, Paul A. Yushkevich:
Surface-based parcellation and vertex-wise analysis of ultra high-resolution ex vivo 7 tesla MRI in neurodegenerative diseases. CoRR abs/2403.19497 (2024)- 2023
- [j38]Long Xie
, Laura E. M. Wisse, Jiancong Wang, Sadhana Ravikumar, Pulkit Khandelwal, Trevor Glenn, Anica Luther, Sydney Lim, David A. Wolk, Paul A. Yushkevich:
Deep label fusion: A generalizable hybrid multi-atlas and deep convolutional neural network for medical image segmentation. Medical Image Anal. 83: 102683 (2023) - [c76]Sadhana Ravikumar, Ranjit Ittyerah, Sydney Lim, Long Xie, Sandhitsu R. Das, Pulkit Khandelwal, Laura E. M. Wisse, Madigan L. Bedard, John L. Robinson, Terry Schuck, Murray Grossman, John Q. Trojanowski, Edward B. Lee, M. Dylan Tisdall, Karthik Prabhakaran, John A. Detre, David J. Irwin, Winifred Trotman, Gabor Mizsei, Emilio Artacho-Pérula, Maria Mercedes Iñiguez de Onzoño Martin, María del Mar Arroyo Jiménez, Mónica Muñoz López, Francisco Javier Molina Romero, Maria del Pilar Marcos Rabal, Sandra Cebada Sánchez, José Carlos Delgado González, Carlos de la Rosa Prieto, Marta Córcoles Parada, David A. Wolk, Ricardo Insausti, Paul A. Yushkevich:
Improved Segmentation of Deep Sulci in Cortical Gray Matter Using a Deep Learning Framework Incorporating Laplace's Equation. IPMI 2023: 692-704 - [c75]Michael Tran Duong, Sandhitsu R. Das, Pulkit Khandelwal, Xueying Lyu, Long Xie, Paul A. Yushkevich, David A. Wolk, Ilya M. Nasrallah:
Image-to-Image Translation Between Tau Pathology and Neuronal Metabolism PET in Alzheimer Disease with Multi-domain Contrastive Learning. MLCN@MICCAI 2023: 3-13 - [i11]Sadhana Ravikumar, Ranjit Ittyerah, Sydney Lim, Long Xie, Sandhitsu R. Das, Pulkit Khandelwal, Laura E. M. Wisse, Madigan L. Bedard, John L. Robinson, Terry Schuck, Murray Grossman, John Q. Trojanowski, Edward B. Lee, M. Dylan Tisdall, Karthik Prabhakaran, John A. Detre, David J. Irwin, Winifred Trotman, Gabor Mizsei, Emilio Artacho-Pérula, Maria Mercedes Iñiguez de Onzoño Martin, María del Mar Arroyo Jiménez, Mónica Muñoz López, Francisco Javier Molina Romero, Maria del Pilar Marcos Rabal, Sandra Cebada Sánchez, José Carlos Delgado González, Carlos de la Rosa Prieto, Marta Córcoles Parada, David A. Wolk, Ricardo Insausti, Paul A. Yushkevich:
Improved Segmentation of Deep Sulci in Cortical Gray Matter Using a Deep Learning Framework Incorporating Laplace's Equation. CoRR abs/2303.00795 (2023) - [i10]Pulkit Khandelwal, Michael Tran Duong, Shokufeh Sadaghiani, Sydney Lim, Amanda Denning, Eunice Chung, Sadhana Ravikumar, Sanaz Arezoumandan, Claire Peterson, Madigan Bedard, Noah Capp, Ranjit Ittyerah, Elyse Migdal, Grace Choi, Emily Kopp, Bridget Loja, Eusha Hasan, Jiacheng Li, Karthik Prabhakaran, Gabor Mizsei, Marianna Gabrielyan, Theresa Schuck, Winifred Trotman, John L. Robinson, Daniel T. Ohm, Edward B. Lee, John Q. Trojanowski, Corey McMillan, Murray Grossman, David J. Irwin, John A. Detre, M. Dylan Tisdall, Sandhitsu R. Das, Laura E. M. Wisse, David A. Wolk, Paul A. Yushkevich:
Automated deep learning segmentation of high-resolution 7 T ex vivo MRI for quantitative analysis of structure-pathology correlations in neurodegenerative diseases. CoRR abs/2303.12237 (2023) - [i9]Mengjin Dong, Long Xie, Sandhitsu R. Das, Jiancong Wang, Laura E. M. Wisse, Robin DeFlores, David A. Wolk, Paul A. Yushkevich:
Regional Deep Atrophy: a Self-Supervised Learning Method to Automatically Identify Regions Associated With Alzheimer's Disease Progression From Longitudinal MRI. CoRR abs/2304.04673 (2023) - 2022
- [j37]Ahmed H. Aly, Pulkit Khandelwal, Abdullah H. Aly, Takayuki Kawashima, Kazuki Mori, Yoshiaki Saito, Judy Hung, Joseph H. Gorman III, Alison M. Pouch, Robert C. Gorman, Paul A. Yushkevich:
Fully Automated 3D Segmentation and Diffeomorphic Medial Modeling of the Left Ventricle Mitral Valve Complex in Ischemic Mitral Regurgitation. Medical Image Anal. 80: 102513 (2022) - [c74]Yifan Wu, Tom Z. Jiahao, Jiancong Wang, Paul A. Yushkevich, M. Ani Hsieh, James C. Gee:
NODEO: A Neural Ordinary Differential Equation Based Optimization Framework for Deformable Image Registration. CVPR 2022: 20772-20781 - 2021
- [j36]Mengjin Dong, Long Xie, Sandhitsu R. Das, Jiancong Wang, Laura E. M. Wisse, Robin DeFlores, David A. Wolk, Paul A. Yushkevich:
DeepAtrophy: Teaching a neural network to detect progressive changes in longitudinal MRI of the hippocampal region in Alzheimer's disease. NeuroImage 243: 118514 (2021) - [c73]Long Xie, Laura E. M. Wisse, Jiancong Wang, Sadhana Ravikumar, Trevor Glenn, Anica Luther, Sydney Lim, David A. Wolk, Paul A. Yushkevich:
Deep Label Fusion: A 3D End-To-End Hybrid Multi-atlas Segmentation and Deep Learning Pipeline. IPMI 2021: 428-439 - [c72]Sadhana Ravikumar, Laura E. M. Wisse, Sydney Lim, David J. Irwin, Ranjit Ittyerah, Long Xie, Sandhitsu R. Das, Edward B. Lee, M. Dylan Tisdall, Karthik Prabhakaran, John A. Detre, Gabor Mizsei, John Q. Trojanowski, John L. Robinson, Theresa Schuck, Murray Grossman, Emilio Artacho-Pérula, Maria Mercedes Iñiguez de Onzoño Martin, María del Mar Arroyo Jiménez, Mónica Muñoz López, Francisco Javier Molina Romero, Maria del Pilar Marcos Rabal, Sandra Cebada Sánchez, José Carlos Delgado González, Carlos de la Rosa Prieto, Marta Córcoles Parada, David A. Wolk, Ricardo Insausti, Paul A. Yushkevich:
Unfolding the Medial Temporal Lobe Cortex to Characterize Neurodegeneration Due to Alzheimer's Disease Pathology Using Ex vivo Imaging. MLCN@MICCAI 2021: 3-12 - [i8]Long Xie, Laura E. M. Wisse, Jiancong Wang, Sadhana Ravikumar, Trevor Glenn, Anica Luther, Sydney Lim, David A. Wolk, Paul A. Yushkevich:
Deep Label Fusion: A 3D End-to-End Hybrid Multi-Atlas Segmentation and Deep Learning Pipeline. CoRR abs/2103.10892 (2021) - [i7]Yifan Wu, Tom Z. Jiahao, Jiancong Wang, Paul A. Yushkevich, James C. Gee, M. Ani Hsieh:
Deformable Image Registration using Neural ODEs. CoRR abs/2108.03443 (2021) - [i6]Pulkit Khandelwal, Shokufeh Sadaghiani, Sadhana Ravikumar, Sydney Lim, Sanaz Arezoumandan, Claire Peterson, Eunice Chung, Madigan Bedard, Noah Capp, Ranjit Ittyerah, Elyse Migdal, Grace Choi, Emily Kopp, Bridget Loja, Eusha Hasan, Jiacheng Li, Karthik Prabhakaran, Gabor Mizsei, Marianna Gabrielyan, Theresa Schuck, John L. Robinson, Daniel T. Ohm, Edward B. Lee, John Q. Trojanowski, Corey McMillan, Murray Grossman, David J. Irwin, M. Dylan Tisdall, Sandhitsu R. Das, Laura E. M. Wisse, David A. Wolk, Paul A. Yushkevich:
Gray Matter Segmentation in Ultra High Resolution 7 Tesla ex vivo T2w MRI of Human Brain Hemispheres. CoRR abs/2110.07711 (2021) - 2020
- [j35]Jirí Borovec, Jan Kybic, Ignacio Arganda-Carreras, Dmitry V. Sorokin, Gloria Bueno, Alexander V. Khvostikov, Spyridon Bakas, Eric I-Chao Chang, Stefan Heldmann, Kimmo Kartasalo, Leena Latonen, Johannes Lotz, Michelle Noga, Sarthak Pati, Kumaradevan Punithakumar, Pekka Ruusuvuori, Andrzej Skalski, Nazanin Tahmasebi, Masi Valkonen, Ludovic Venet, Yizhe Wang, Nick Weiss, Marek Wodzinski, Yu Xiang, Yan Xu, Yan Yan, Paul A. Yushkevich, Shengyu Zhao, Arrate Muñoz-Barrutia:
ANHIR: Automatic Non-Rigid Histological Image Registration Challenge. IEEE Trans. Medical Imaging 39(10): 3042-3052 (2020) - [c71]Sadhana Ravikumar, Laura E. M. Wisse, Ranjit Ittyerah, Sydney Lim, Madigan Lavery, Long Xie, John L. Robinson, Theresa Schuck, Murray Grossman, Edward B. Lee, M. Dylan Tisdall, Karthik Prabhakaran, John A. Detre, Sandhitsu R. Das, Gabor Mizsei, Emilio Artacho-Pérula, Maria Mercedes Iñiguez de Onzoño Martin, María del Mar Arroyo Jiménez, Mónica Muñoz López, Francisco Javier Molina Romero, Maria del Pilar Marcos Rabal, David J. Irwin, John Q. Trojanowski, David A. Wolk, Ricardo Insausti, Paul A. Yushkevich:
Building an Ex Vivo Atlas of the Earliest Brain Regions Affected by Alzheimer's Disease Pathology. ISBI 2020: 113-117 - [c70]Paul A. Yushkevich, Maria Mercedes Iñiguez de Onzoño Martin, Ranjit Ittyerah, Sydney Lim, Madigan Lavery, Jiancong Wang, Alex Ling Yu Hung, Nicolas Vergnet, Sadhana Ravikumar, Long Xie, Mengjin Dong, Robin DeFlores, Salena Cui, Lauren McCollum, Daniel T. Ohm, John L. Robinson, Theresa Schuck, Murray Grossman, M. Dylan Tisdall, Karthik Prabhakaran, Gabor Mizsei, Sandhitsu R. Das, Emilio Artacho-Pérula, María del Mar Arroyo Jiménez, Mónica Muñoz López, Maria del Pilar Marcos Rabal, Francisco Javier Molina Romero, Edward B. Lee, John Q. Trojanowski, Laura E. M. Wisse, David A. Wolk, David J. Irwin, Ricardo Insausti:
3D Mapping of TAU Neurofibrillary Tangle Pathology in the Human Medial Temporal Lobe. ISBI 2020: 1312-1316 - [c69]Alison M. Pouch, Paul A. Yushkevich, Abdullah H. Aly, Alexander H. F. Woltersom, Edidiong Okon, Ahmed H. Aly, Natalie Yushkevich, Shobhana Parameshwaran, Jiancong Wang, Baris U. Oguz, James C. Gee, Ipek Oguz, Nadav Schwartz:
Automated Meshing of Anatomical Shapes for Deformable Medial Modeling: Application to the Placenta in 3D Ultrasound. ISBI 2020: 1842-1846 - [c68]Pulkit Khandelwal, Paul A. Yushkevich:
Domain Generalizer: A Few-Shot Meta Learning Framework for Domain Generalization in Medical Imaging. DART/DCL@MICCAI 2020: 73-84 - [i5]Pulkit Khandelwal, Paul A. Yushkevich:
Domain Generalizer: A Few-shot Meta Learning Framework for Domain Generalization in Medical Imaging. CoRR abs/2008.07724 (2020) - [i4]Mengjin Dong, Long Xie, Sandhitsu R. Das, Jiancong Wang, Laura E. M. Wisse, Robin DeFlores, David A. Wolk, Paul A. Yushkevich:
DeepAtrophy: Teaching a Neural Network to Differentiate Progressive Changes from Noise on Longitudinal MRI in Alzheimer's Disease. CoRR abs/2010.12948 (2020)
2010 – 2019
- 2019
- [j34]Paul A. Yushkevich, Artem Pashchinskiy, Ipek Oguz, Suyash Mohan, J. Eric Schmitt, Joel M. Stein, Dzenan Zukic, Jared Vicory, Matthew McCormick, Natalie Yushkevich, Nadav Schwartz, Yang Gao, Guido Gerig:
User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP. Neuroinformatics 17(1): 83-102 (2019) - [c67]Sarthak Pati, Ashish Singh, Saima Rathore, Aimilia Gastounioti, Mark Bergman, Phuc Ngo, Sung Min Ha, Dimitrios Bounias, James Minock, Grayson Murphy, Hongming Li, Amit Bhattarai, Adam Wolf, Patmaa Sridaran, Ratheesh Kalarot, Hamed Akbari, Aristeidis Sotiras, Siddhesh P. Thakur, Ragini Verma, Russell T. Shinohara, Paul A. Yushkevich, Yong Fan, Despina Kontos, Christos Davatzikos, Spyridon Bakas:
The Cancer Imaging Phenomics Toolkit (CaPTk): Technical Overview. BrainLes@MICCAI (2) 2019: 380-394 - [c66]Paul A. Yushkevich, Ahmed H. Aly, Jiancong Wang, Long Xie, Robert C. Gorman, Laurent Younes, Alison M. Pouch:
Diffeomorphic Medial Modeling. IPMI 2019: 208-220 - [c65]Sadhana Ravikumar, Laura E. M. Wisse, Yang Gao, Guido Gerig, Paul A. Yushkevich:
Facilitating Manual Segmentation of 3D Datasets Using Contour And Intensity Guided Interpolation. ISBI 2019: 714-718 - [c64]Long Xie, Jiancong Wang, Mengjin Dong, David A. Wolk, Paul A. Yushkevich:
Improving Multi-atlas Segmentation by Convolutional Neural Network Based Patch Error Estimation. MICCAI (3) 2019: 347-355 - [e1]Albert C. S. Chung, James C. Gee, Paul A. Yushkevich, Siqi Bao:
Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Hong Kong, China, June 2-7, 2019, Proceedings. Lecture Notes in Computer Science 11492, Springer 2019, ISBN 978-3-030-20350-4 [contents] - [i3]Paul A. Yushkevich, Ahmed H. Aly, Jiancong Wang, Long Xie, Robert C. Gorman, Alison M. Pouch, Laurent Younes:
Diffeomorphic Medial Modeling. CoRR abs/1902.02371 (2019) - [i2]Ludovic Venet, Sarthak Pati, Paul A. Yushkevich, Spyridon Bakas:
Accurate and Robust Alignment of Variable-stained Histologic Images Using a General-purpose Greedy Diffeomorphic Registration Tool. CoRR abs/1904.11929 (2019) - [i1]Jiancong Wang, Long Xie, Paul A. Yushkevich, James C. Gee:
Barnes-Hut Approximation for Point SetGeodesic Shooting. CoRR abs/1907.04834 (2019) - 2018
- [j33]Daniel H. Adler, Laura E. M. Wisse, Ranjit Ittyerah, John Pluta, Song-Lin Ding, Long Xie, Jiancong Wang, Salmon Kadivar, John L. Robinson, Theresa Schuck, John Q. Trojanowski, Murray Grossman, John A. Detre, Mark A. Elliott, Jon B. Toledo, Weixia Liu, Stephen Pickup, Michael I. Miller, Sandhitsu R. Das, David A. Wolk, Paul A. Yushkevich:
Characterizing the human hippocampus in aging and Alzheimer's disease using a computational atlas derived from ex vivo MRI and histology. Proc. Natl. Acad. Sci. USA 115(16): 4252-4257 (2018) - [c63]Long Xie, Laura E. M. Wisse, Sandhitsu R. Das, Ranjit Ittyerah, Jiancong Wang, David A. Wolk, Paul A. Yushkevich:
Characterizing Anatomical Variability and Alzheimer's Disease Related Cortical Thinning in the Medial Temporal Lobe Using Graph-Based Groupwise Registration and Point Set Geodesic Shooting. ShapeMI@MICCAI 2018: 28-37 - [c62]Baris U. Oguz, Jiancong Wang, Natalie Yushkevich, Alison M. Pouch, James C. Gee, Paul A. Yushkevich, Nadav Schwartz, Ipek Oguz:
Combining Deep Learning and Multi-atlas Label Fusion for Automated Placenta Segmentation from 3DUS. DATRA/PIPPI@MICCAI 2018: 138-148 - [c61]Ahmed H. Aly, Abdullah H. Aly, Mahmoud Elrakhawy, Kirlos Haroun, Luis Prieto-Riascos, Robert C. Gorman Jr., Natalie Yushkevich, Yoshiaki Saito, Joseph H. Gorman III, Robert C. Gorman, Paul A. Yushkevich, Alison M. Pouch:
Semi-automated Image Segmentation of the Midsystolic Left Ventricular Mitral Valve Complex in Ischemic Mitral Regurgitation. STACOM@MICCAI 2018: 142-151 - 2017
- [j32]Long Xie, John Pluta, Sandhitsu R. Das, Laura E. M. Wisse, Hongzhi Wang, Lauren Mancuso, Dasha Kliot, Brian B. Avants, Song-Lin Ding, José V. Manjón, David A. Wolk, Paul A. Yushkevich:
Multi-template analysis of human perirhinal cortex in brain MRI: Explicitly accounting for anatomical variability. NeuroImage 144: 183-202 (2017) - [j31]Diliana Pecheva, Paul A. Yushkevich, Dafnis Batalle, Emer J. Hughes, Paul Aljabar, Julia Wurie, Joseph V. Hajnal, A. David Edwards, Daniel C. Alexander, Serena J. Counsell, Hui Zhang:
A tract-specific approach to assessing white matter in preterm infants. NeuroImage 157: 675-694 (2017) - [c60]Alison M. Pouch, Ahmed H. Aly, Andras Lasso, Alexander V. Nguyen, Adam B. Scanlan, Francis X. McGowan, Gabor Fichtinger, Robert C. Gorman, Joseph H. Gorman III, Paul A. Yushkevich, Matthew A. Jolley:
Image Segmentation and Modeling of the Pediatric Tricuspid Valve in Hypoplastic Left Heart Syndrome. FIMH 2017: 95-105 - [c59]Ipek Oguz, Aaron Carass, Dzung L. Pham, Snehashis Roy, Nagesh Subbana, Peter A. Calabresi, Paul A. Yushkevich, Russell T. Shinohara, Jerry L. Prince:
Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation. BrainLes@MICCAI 2017: 3-14 - [c58]Greg M. Fleishman, Alessandra Valcarcel, Dzung L. Pham, Snehashis Roy, Peter A. Calabresi, Paul A. Yushkevich, Russell T. Shinohara, Ipek Oguz:
Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis Lesion Segmentation. BrainLes@MICCAI 2017: 43-54 - [c57]Mengjin Dong, Ipek Oguz, Nagesh Subbana, Peter A. Calabresi, Russell T. Shinohara, Paul A. Yushkevich:
Multiple Sclerosis Lesion Segmentation Using Joint Label Fusion. Patch-MI@MICCAI 2017: 138-145 - [c56]Baris U. Oguz, Russell T. Shinohara, Paul A. Yushkevich, Ipek Oguz:
Gradient Boosted Trees for Corrective Learning. MLMI@MICCAI 2017: 203-211 - [c55]Alison M. Pouch, Ahmed H. Aly, Eric Lai, Natalie Yushkevich, Rutger H. Stoffers, Joseph H. Gorman IV, Albert T. Cheung, Joseph H. Gorman III, Robert C. Gorman, Paul A. Yushkevich:
Spatiotemporal Segmentation and Modeling of the Mitral Valve in Real-Time 3D Echocardiographic Images. MICCAI (1) 2017: 746-754 - 2016
- [c54]Paul A. Yushkevich, Yang Gao, Guido Gerig:
ITK-SNAP: An interactive tool for semi-automatic segmentation of multi-modality biomedical images. EMBC 2016: 3342-3345 - [c53]Paul A. Yushkevich, Laura E. M. Wisse, Daniel H. Adler, Ranjit Ittyerah, John Pluta, John L. Robinson, Theresa Schuck, John Q. Trojanowski, Murray Grossman, John A. Detre, Mark A. Elliott, Jon B. Toledo, Weixia Liu, Stephen Pickup, Sandhitsu R. Das, David A. Wolk:
A framework for informing segmentation of in vivo MRI with information derived from ex vivo imaging: Application in the medial temporal lobe. EMBC 2016: 6014-6017 - [c52]Daniel H. Adler, Ranjit Ittyerah, John Pluta, Stephen Pickup, Weixia Liu, David A. Wolk, Paul A. Yushkevich:
Probabilistic Atlas of the Human Hippocampus Combining Ex Vivo MRI and Histology. MICCAI (3) 2016: 63-71 - [c51]Ning Yu, Hongzhi Wang, Paul A. Yushkevich:
Supervoxel-Based Hierarchical Markov Random Field Framework for Multi-atlas Segmentation. Patch-MI@MICCAI 2016: 100-108 - [c50]Ipek Oguz, Satyananda Kashyap, Hongzhi Wang, Paul A. Yushkevich, Milan Sonka:
Globally Optimal Label Fusion with Shape Priors. MICCAI (2) 2016: 538-546 - [c49]Long Xie, Laura E. M. Wisse, Sandhitsu R. Das, Hongzhi Wang, David A. Wolk, José V. Manjón, Paul A. Yushkevich:
Accounting for the Confound of Meninges in Segmenting Entorhinal and Perirhinal Cortices in T1-Weighted MRI. MICCAI (2) 2016: 564-571 - 2015
- [j30]Alison M. Pouch, Sijie Tian, Manabu Takabe, Jiefu Yuan, Robert C. Gorman Jr., Albert T. Cheung, Hongzhi Wang, Benjamin M. Jackson, Joseph H. Gorman III, Robert C. Gorman, Paul A. Yushkevich:
Medially constrained deformable modeling for segmentation of branching medial structures: Application to aortic valve segmentation and morphometry. Medical Image Anal. 26(1): 217-231 (2015) - [j29]Paul A. Yushkevich, Robert S. C. Amaral, Jean C. Augustinack, Andrew R. Bender, Jeffrey D. Bernstein, Marina Boccardi, Martina Bocchetta, Alison C. Burggren, Valerie A. Carr, M. Mallar Chakravarty, Gaël Chételat, Ana M. Daugherty, Lila Davachi, Song-Lin Ding, Arne D. Ekstrom, Mirjam I. Geerlings, Abdul Hassan, Yushan Huang, Juan Eugenio Iglesias, Renaud La Joie, Geoffrey A. Kerchner, Karen F. LaRocque, Laura A. Libby, Nikolai Malykhin, Susanne G. Mueller, Rosanna K. Olsen, Daniela J. Palombo, Mansi B. Parekh:
Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: Towards a harmonized segmentation protocol. NeuroImage 111: 526-541 (2015) - [j28]David M. Cash, Chris Frost, Leonardo O. Iheme, Devrim Ünay, Melek Kandemir, Jurgen Fripp, Olivier Salvado, Pierrick Bourgeat, Martin Reuter, Bruce Fischl, Marco Lorenzi, Giovanni B. Frisoni, Xavier Pennec, Ronald K. Pierson, Jeffrey L. Gunter, Matthew L. Senjem, Clifford R. Jack Jr., Nicolas Guizard, Vladimir S. Fonov, D. Louis Collins, Marc Modat, M. Jorge Cardoso, Kelvin K. Leung, Hongzhi Wang, Sandhitsu R. Das, Paul A. Yushkevich, Ian B. Malone, Nick C. Fox, Jonathan M. Schott, Sébastien Ourselin:
Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. NeuroImage 123: 149-164 (2015) - [c48]Long Xie, Suman Sedai, Xi Liang, Colin B. Compas, Hongzhi Wang, Paul A. Yushkevich, Tanveer F. Syeda-Mahmood:
Multi-atlas label fusion with augmented atlases for fast and accurate segmentation of cardiac MR images. ISBI 2015: 376-379 - 2014
- [j27]Alison M. Pouch, Hongzhi Wang, Manabu Takabe, Benjamin M. Jackson, Joseph H. Gorman III, Robert C. Gorman, Paul A. Yushkevich, Chandra M. Sehgal:
Fully automatic segmentation of the mitral leaflets in 3D transesophageal echocardiographic images using multi-atlas joint label fusion and deformable medial modeling. Medical Image Anal. 18(1): 118-129 (2014) - [j26]Daniel H. Adler, John Pluta, Salmon Kadivar, Caryne Craige, James C. Gee, Brian B. Avants, Paul A. Yushkevich:
Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI. NeuroImage 84: 505-523 (2014) - [c47]Long Xie, John Pluta, Hongzhi Wang, Sandhitsu R. Das, Lauren Mancuso, Dasha Kliot, Brian B. Avants, Song-Lin Ding, David A. Wolk, Paul A. Yushkevich:
Automatic Clustering and Thickness Measurement of Anatomical Variants of the Human Perirhinal Cortex. MICCAI (3) 2014: 81-88 - [c46]Alison M. Pouch, Sijie Tian, Manabu Takabe, Hongzhi Wang, Jiefu Yuan, Albert T. Cheung, Benjamin M. Jackson, Joseph H. Gorman III, Robert C. Gorman, Paul A. Yushkevich:
Segmentation of the Aortic Valve Apparatus in 3D Echocardiographic Images: Deformable Modeling of a Branching Medial Structure. STACOM 2014: 196-203 - 2013
- [j25]Hongzhi Wang, Paul A. Yushkevich:
Multi-atlas segmentation with joint label fusion and corrective learning - an open source implementation. Frontiers Neuroinformatics 7: 27 (2013) - [j24]Hongzhi Wang, Jung Wook Suh, Sandhitsu R. Das, John Pluta, Caryne Craige, Paul A. Yushkevich:
Multi-Atlas Segmentation with Joint Label Fusion. IEEE Trans. Pattern Anal. Mach. Intell. 35(3): 611-623 (2013) - [c45]Paul A. Yushkevich, Hui Gary Zhang:
Deformable Modeling Using a 3D Boundary Representation with Quadratic Constraints on the Branching Structure of the Blum Skeleton. IPMI 2013: 280-291 - [c44]Hongzhi Wang, Alison M. Pouch, Manabu Takabe, Benjamin M. Jackson, Joseph H. Gorman III, Robert C. Gorman, Paul A. Yushkevich:
Multi-atlas Segmentation with Robust Label Transfer and Label Fusion. IPMI 2013: 548-559 - [c43]Alison M. Pouch, Hongzhi Wang, Manabu Takabe, Benjamin M. Jackson, Chandra M. Sehgal, Joseph H. Gorman III, Robert C. Gorman, Paul A. Yushkevich:
Automated Segmentation and Geometrical Modeling of the Tricuspid Aortic Valve in 3D Echocardiographic Images. MICCAI (1) 2013: 485-492 - [c42]Hongzhi Wang, Paul A. Yushkevich:
Multi-atlas Segmentation without Registration: A Supervoxel-Based Approach. MICCAI (3) 2013: 535-542 - [c41]Hongzhi Wang, Paul A. Yushkevich:
Groupwise Segmentation with Multi-atlas Joint Label Fusion. MICCAI (1) 2013: 711-718 - 2012
- [j23]Sandhitsu R. Das, Brian B. Avants, John Pluta, Hongzhi Wang, Jung Wook Suh, Michael W. Weiner, Susanne G. Mueller, Paul A. Yushkevich:
Measuring longitudinal change in the hippocampal formation from in vivo high-resolution T2-weighted MRI. NeuroImage 60(2): 1266-1279 (2012) - [c40]Hongzhi Wang, Paul A. Yushkevich:
Spatial bias in multi-atlas based segmentation. CVPR 2012: 909-916 - [c39]Paul A. Yushkevich, Hongzhi Wang, John Pluta, Brian B. Avants:
From label fusion to correspondence fusion: A new approach to unbiased groupwise registration. CVPR 2012: 956-963 - [c38]Daniel H. Adler, Alex Yang Liu, John Pluta, Salmon Kadivar, Sylvia Orozco, Hongzhi Wang, James C. Gee, Brian B. Avants, Paul A. Yushkevich:
Reconstruction of the human hippocampus in 3D from histology and high-resolution ex-vivo MRI. ISBI 2012: 294-297 - [c37]Hongzhi Wang, Paul A. Yushkevich:
Dependency prior for multi-atlas label fusion. ISBI 2012: 892-895 - [c36]Hongzhi Wang, Paul A. Yushkevich:
Guiding Automatic Segmentation with Multiple Manual Segmentations. MICCAI (2) 2012: 429-436 - 2011
- [j22]Hongzhi Wang, Sandhitsu R. Das, Jung Wook Suh, Murat Altinay, John Pluta, Caryne Craige, Brian B. Avants, Paul A. Yushkevich:
A learning-based wrapper method to correct systematic errors in automatic image segmentation: Consistently improved performance in hippocampus, cortex and brain segmentation. NeuroImage 55(3): 968-985 (2011) - [j21]Sandhitsu R. Das, Dawn Mechanic-Hamilton, John Pluta, Marc Korczykowski, John A. Detre, Paul A. Yushkevich:
Heterogeneity of functional activation during memory encoding across hippocampal subfields in temporal lobe epilepsy. NeuroImage 58(4): 1121-1130 (2011) - [c35]Hongzhi Wang, Jung Wook Suh, Sandhitsu R. Das, John Pluta, Murat Altinay, Paul A. Yushkevich:
Regression-based label fusion for multi-atlas segmentation. CVPR 2011: 1113-1120 - [c34]Hongzhi Wang, Jung Wook Suh, John Pluta, Murat Altinay, Paul A. Yushkevich:
Optimal Weights for Multi-atlas Label Fusion. IPMI 2011: 73-84 - [c33]Hongzhi Wang, Jung Wook Suh, Sandhitsu R. Das, Murat Altinay, John Pluta, Paul A. Yushkevich:
Hippocampus segmentation using a stable maximum likelihood classifier ensemble algorithm. ISBI 2011: 2036-2040 - 2010
- [j20]Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich:
A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features. Medical Image Anal. 14(5): 666-673 (2010) - [j19]Brian B. Avants, Paul A. Yushkevich, John Pluta, David Minkoff, Marc Korczykowski, John A. Detre, James C. Gee:
The optimal template effect in hippocampus studies of diseased populations. NeuroImage 49(3): 2457-2466 (2010) - [j18]Paul A. Yushkevich, Brian B. Avants, Sandhitsu R. Das, John Pluta, Murat Altinay, Caryne Craige:
Bias in estimation of hippocampal atrophy using deformation-based morphometry arises from asymmetric global normalization: An illustration in ADNI 3 T MRI data. NeuroImage 50(2): 434-445 (2010) - [j17]Suyash P. Awate, Paul A. Yushkevich, Zhuang Song, Daniel J. Licht, James C. Gee:
Cerebral cortical folding analysis with multivariate modeling and testing: Studies on gender differences and neonatal development. NeuroImage 53(2): 450-459 (2010) - [j16]Paul A. Yushkevich, Hongzhi Wang, John Pluta, Sandhitsu R. Das, Caryne Craige, Brian B. Avants, Michael W. Weiner, Susanne G. Mueller:
Nearly automatic segmentation of hippocampal subfields in in vivo focal T2-weighted MRI. NeuroImage 53(4): 1208-1224 (2010) - [j15]Nicholas J. Tustison, Brian B. Avants, Philip A. Cook, Yuanjie Zheng, Alexander Egan, Paul A. Yushkevich, James C. Gee:
N4ITK: Improved N3 Bias Correction. IEEE Trans. Medical Imaging 29(6): 1310-1320 (2010) - [c32]Hongzhi Wang, Sandhitsu R. Das, John Pluta, Caryne Craige, Murat Altinay, Michael Weiner, Susanne G. Mueller, Paul A. Yushkevich:
Shape-based semi-automatic hippocampal subfield segmentation with learning-based bias removal. ISBI 2010: 424-427 - [c31]Hongzhi Wang, Sandhitsu R. Das, John Pluta, Caryne Craige, Murat Altinay, Brian B. Avants, Michael Weiner, Susanne G. Mueller, Paul A. Yushkevich:
Standing on the Shoulders of Giants: Improving Medical Image Segmentation via Bias Correction. MICCAI (3) 2010: 105-112 - [c30]Hui Sun, Alejandro F. Frangi, Hongzhi Wang, Federico Sukno, Catalina Tobon-Gomez, Paul A. Yushkevich:
Automatic Cardiac MRI Segmentation Using a Biventricular Deformable Medial Model. MICCAI (1) 2010: 468-475 - [c29]Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee:
A Computational White Matter Atlas for Aging with Surface-Based Representation of Fasciculi. WBIR 2010: 83-90
2000 – 2009
- 2009
- [j14]Paul A. Yushkevich, Brian B. Avants, John Pluta, Sandhitsu R. Das, David Minkoff, Dawn Mechanic-Hamilton, Simon Glynn, Stephen Pickup, Weixia Liu, James C. Gee, Murray Grossman, John A. Detre:
A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T. NeuroImage 44(2): 385-398 (2009) - [j13]Paul A. Yushkevich:
Continuous medial representation of brain structures using the biharmonic PDE. NeuroImage 45(1): S99-S110 (2009) - [c28]Suyash P. Awate, Paul A. Yushkevich, Zhuang Song, Daniel J. Licht, James C. Gee:
Multivariate High-Dimensional Cortical Folding Analysis, Combining Complexity and Shape, in Neonates with Congenital Heart Disease. IPMI 2009: 552-563 - [c27]Hui Sun, Catalina Tobon-Gomez, Sandhitsu R. Das, Marina Huguet, Paul A. Yushkevich, Alejandro F. Frangi:
Ventricular Wall Thickness Analysis in Acute Myocardial Infarction and Hypertrophic Cardiomyopathy. ISBI 2009: 670-673 - [c26]Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich:
A Tract-Specific Framework for White Matter Morphometry Combining Macroscopic and Microscopic Tract Features. MICCAI (1) 2009: 141-149 - [c25]Suyash P. Awate, Paul A. Yushkevich, Daniel J. Licht, James C. Gee:
Gender Differences in Cerebral Cortical Folding: Multivariate Complexity-Shape Analysis with Insights into Handling Brain-Volume Differences. MICCAI (1) 2009: 200-207 - [c24]Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee:
Tensor-Based Morphometry of Fibrous Structures with Application to Human Brain White Matter. MICCAI (1) 2009: 466-473 - 2008
- [j12]Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee:
Structure-specific statistical mapping of white matter tracts. NeuroImage 41(2): 448-461 (2008) - [c23]Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, Stephen Pickup, Weixia Liu, John A. Detre, Murray Grossman, James C. Gee:
Building an atlas of hippocampal subfields using postmortem MRI. ISBI 2008: 161-164 - [c22]Sandhitsu R. Das, Dawn Mechanic-Hamilton, Marc Korczykowski, Brian B. Avants, John A. Detre, James C. Gee, Paul A. Yushkevich:
Spatial correspondence based asymmetry analysis in FMRI. ISBI 2008: 616-619 - [c21]Hui Zhang, Paul A. Yushkevich, Tony J. Simon, James C. Gee:
Surface-based modeling of white matter fasciculi with orientation encoding. ISBI 2008: 708-711 - [c20]Hui Sun, Brian B. Avants, Alejandro F. Frangi, Sebastián Ordas, James C. Gee, Paul A. Yushkevich:
Branching medial models for cardiac shape representation. ISBI 2008: 1485-1488 - [c19]Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, John A. Detre, Murray Grossman, James C. Gee:
Shape-Based Alignment of Hippocampal Subfields: Evaluation in Postmortem MRI. MICCAI (1) 2008: 510-517 - [c18]Suyash P. Awate, Lawrence Win, Paul A. Yushkevich, Robert T. Schultz, James C. Gee:
3D Cerebral Cortical Morphometry in Autism: Increased Folding in Children and Adolescents in Frontal, Parietal, and Temporal Lobes. MICCAI (1) 2008: 559-567 - [c17]Hui Sun, Brian B. Avants, Alejandro F. Frangi, Federico Sukno, James C. Gee, Paul A. Yushkevich:
Cardiac Medial Modeling and Time-Course Heart Wall Thickness Analysis. MICCAI (2) 2008: 766-773 - [p3]Stephen M. Pizer, Kaleem Siddiqi, Paul A. Yushkevich:
Introduction. Medial Representations 2008: 1-34 - [p2]Stephen M. Pizer, Qiong Han, Sarang C. Joshi, P. Thomas Fletcher, Paul A. Yushkevich, Andrew Thall:
Synthesis, Deformation, and Statistics of 3D Objects via M-Reps. Medial Representations 2008: 241-266 - 2007
- [j11]Paul A. Yushkevich, John A. Detre, Dawn Mechanic-Hamilton, María A. Fernández-Seara, Kathy Z. Tang, Angela Hoang, Marc Korczykowski, Hui Zhang, James C. Gee:
Hippocampus-specific fMRI group activation analysis using the continuous medial representation. NeuroImage 35(4): 1516-1530 (2007) - [j10]Lydia Ng, Sayan D. Pathak, Chihchau Kuan, Christopher Lau, Hong-wei Dong, Andrew Sodt, Chinh Dang, Brian B. Avants, Paul A. Yushkevich, James C. Gee, David R. Haynor, Ed S. Lein, Allan Jones, Michael Hawrylycz:
Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain. IEEE ACM Trans. Comput. Biol. Bioinform. 4(3): 382-393 (2007) - [j9]Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee:
Shape-Based Normalization of the Corpus Callosum for DTI Connectivity Analysis. IEEE Trans. Medical Imaging 26(9): 1166-1178 (2007) - [j8]Hui Zhang, Brian B. Avants, Paul A. Yushkevich, John H. Woo, Sumei Wang, L. F. McCluskey, L. B. Elman, Elias R. Melhem, James C. Gee:
High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis. IEEE Trans. Medical Imaging 26(11): 1585-1597 (2007) - [c16]Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee:
Structure-Specific Statistical Mapping of White Matter Tracts using the Continuous Medial Representation. ICCV 2007: 1-8 - [c15]Paul A. Yushkevich, John A. Detre, James C. Gee:
Non-Uniform Smoothing in Hippocampus-Specific Group Fmri Analysis. ISBI 2007: 420-423 - [c14]Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee:
Unbiased White Matter Atlas Construction Using Diffusion Tensor Images. MICCAI (2) 2007: 211-218 - [c13]Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee:
Evaluation of Shape-Based Normalization in the Corpus Callosum for White Matter Connectivity Analysis. MICCAI (2) 2007: 777-784 - 2006
- [j7]Hui Zhang, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee:
Deformable registration of diffusion tensor MR images with explicit orientation optimization. Medical Image Anal. 10(5): 764-785 (2006) - [j6]Paul A. Yushkevich, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C. Gee, Guido Gerig:
User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability. NeuroImage 31(3): 1116-1128 (2006) - [j5]Paul A. Yushkevich, Hui Zhang, James C. Gee:
Continuous Medial Representation for Anatomical Structures. IEEE Trans. Medical Imaging 25(12): 1547-1564 (2006) - [c12]Hui Sun, Paul A. Yushkevich, Hui Zhang, James C. Gee, Tony J. Simon:
Efficient Generation of Shape-Based Reference Frames for the Corpus Callosum for DTI-based Connectivity Analysis. CVPR Workshops 2006: 87 - [c11]Paul A. Yushkevich, John A. Detre, Kathy Z. Tang, Angela Hoang, Dawn Mechanic-Hamilton, María A. Fernández-Seara, Marc Korczykowski, Hui Zhang, James C. Gee:
Hippocampus-Specific fMRI Group Activation Analysis with Continuous M-Reps. MICCAI (2) 2006: 284-291 - [c10]Paul A. Yushkevich, Brian B. Avants, Lydia Ng, Michael Hawrylycz, Pablo D. Burstein, Hui Zhang, James C. Gee:
3D Mouse Brain Reconstruction from Histology Using a Coarse-to-Fine Approach. WBIR 2006: 230-237 - [p1]James C. Gee, Hui Zhang, Abraham Dubb, Brian B. Avants, Paul A. Yushkevich, Jeffrey T. Duda:
Anatomy-Based Visualizations of Diffusion Tensor Images of Brain White Matter. Visualization and Processing of Tensor Fields 2006: 155-163 - 2005
- [c9]Paul A. Yushkevich, Hui Zhang, James C. Gee:
Parametric Medial Shape Representation in 3-D via the Poisson Partial Differential Equation with Non-linear Boundary Conditions. IPMI 2005: 162-173 - [c8]Philip A. Cook, Hui Zhang, Brian B. Avants, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee, Olga Ciccarelli, Alan J. Thompson:
An Automated Approach to Connectivity-Based Partitioning of Brain Structures. MICCAI 2005: 164-171 - [c7]Hui Zhang, Paul A. Yushkevich, James C. Gee:
Deformable Registration of Diffusion Tensor MR Images with Explicit Orientation Optimization. MICCAI 2005: 172-179 - [c6]Paul A. Yushkevich, Hui Zhang, James C. Gee:
Statistical Modeling of Shape and Appearance Using the Continuous Medial Representation. MICCAI (2) 2005: 725-732 - 2004
- [c5]Hui Zhang, Paul A. Yushkevich, James C. Gee:
Registration of Diffusion Tensor Images. CVPR (1) 2004: 842-847 - [c4]Hui Zhang, Paul A. Yushkevich, James C. Gee:
Towards Diffusion Profile Image Registration. ISBI 2004: 324-327 - [c3]Abraham Dubb, Paul A. Yushkevich, Zhiyong Xie, Ruben C. Gur, Raquel E. Gur, James C. Gee:
Regional Structural Characterization of the Brain of Schizophrenia Patients. MICCAI (2) 2004: 688-695 - 2003
- [j4]Stephen M. Pizer, P. Thomas Fletcher, Sarang C. Joshi, Andrew Thall, James Z. Chen, Yonatan Fridman, Daniel S. Fritsch, A. Graham Gash, John M. Glotzer, Michael R. Jiroutek, Conglin Lu, Keith E. Muller, Gregg Tracton, Paul A. Yushkevich, Edward L. Chaney:
Deformable M-Reps for 3D Medical Image Segmentation. Int. J. Comput. Vis. 55(2-3): 85-106 (2003) - [j3]Paul A. Yushkevich, P. Thomas Fletcher, Sarang C. Joshi, Andrew Thall, Stephen M. Pizer:
Continuous medial representations for geometric object modeling in 2D and 3D. Image Vis. Comput. 21(1): 17-27 (2003) - [c2]Paul A. Yushkevich, Sarang C. Joshi, Stephen M. Pizer, John G. Csernansky, Lei E. Wang:
Feature Selection for Shape-Based Classification of Biological Objects. IPMI 2003: 114-125 - 2002
- [j2]Sarang C. Joshi, Stephen M. Pizer, P. Thomas Fletcher, Paul A. Yushkevich, Andrew Thall, J. S. Marron:
Multi-scale Deformable Model Segmentation and Statistical Shape Analysis Using Medial Descriptions. IEEE Trans. Medical Imaging 21(5): 538-550 (2002) - 2001
- [c1]Paul A. Yushkevich, Stephen M. Pizer, Sarang C. Joshi, J. S. Marron:
Intuitive, Localized Analysis of Shape Variability. IPMI 2001: 402-408
1990 – 1999
- 1999
- [j1]Stephen M. Pizer, Daniel S. Fritsch, Paul A. Yushkevich, Valen E. Johnson, Edward L. Chaney:
Segmentation, Registration and Measurement of Shape Variation via Image Object Shape. IEEE Trans. Medical Imaging 18(10): 851-865 (1999)
Coauthor Index
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