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2020 – today
- 2024
[i2]Oliver Lloyd, Yi Liu, Tom R. Gaunt:
Tensor Factorisation for Polypharmacy Side Effect Prediction. CoRR abs/2404.11374 (2024)- 2023
- [j24]Yi Liu
, Benjamin L. Elsworth, Tom R. Gaunt:
Using language models and ontology topology to perform semantic mapping of traits between biomedical datasets. Bioinform. 39(4) (2023) - [j23]Oliver Lloyd, Yi Liu, Tom R. Gaunt:
Assessing the effects of hyperparameters on knowledge graph embedding quality. J. Big Data 10(1): 59 (2023) - 2022
- [i1]Oliver Lloyd, Yi Liu, Tom R. Gaunt:
Assessing the Effects of Hyperparameters on Knowledge Graph Embedding Quality. CoRR abs/2207.00473 (2022) - 2021
- [j22]Mark F. Rogers, Tom R. Gaunt, Colin Campbell:
Prediction of driver variants in the cancer genome via machine learning methodologies. Briefings Bioinform. 22(4) (2021) - [j21]M. K. Sobczyk, Tom R. Gaunt, Lavinia Paternoster:
MendelVar: gene prioritization at GWAS loci using phenotypic enrichment of Mendelian disease genes. Bioinform. 37(1): 1-8 (2021) - [j20]Yi Liu, Benjamin L. Elsworth, Pau Erola, Valeriia Haberland, Gibran Hemani, Matt Lyon, Jie Zheng, Oliver Lloyd, Marina Vabistsevits, Tom R. Gaunt:
Erratum to: EpiGraphDB: a database and data mining platform for health data science. Bioinform. 37(2): 288 (2021) - [j19]Benjamin L. Elsworth, Tom R. Gaunt:
MELODI Presto: a fast and agile tool to explore semantic triples derived from biomedical literature. Bioinform. 37(4): 583-585 (2021) - [j18]Yi Liu, Benjamin L. Elsworth, Pau Erola, Valeriia Haberland, Gibran Hemani, Matt Lyon, Jie Zheng, Oliver Lloyd, Marina Vabistsevits, Tom R. Gaunt:
EpiGraphDB: a database and data mining platform for health data science. Bioinform. 37(9): 1304-1311 (2021) - [j17]Mark F. Rogers, Tom R. Gaunt, Colin Campbell:
CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome. Bioinform. 37(22): 4298 (2021) - [j16]Alvina Grace Lai, Wai Hoong Chang, Constantinos A. Parisinos, Michail Katsoulis, Ruth M. Blackburn, Anoop D. Shah, Vincent Nguyen, Spiros C. Denaxas, George Davey Smith, Tom R. Gaunt, Krishnarajah Nirantharakumar, Murray P. Cox, Donall Forde, Folkert W. Asselbergs, Steve K. Harris, Sylvia Richardson, Reecha Sofat, Richard J. B. Dobson, Aroon D. Hingorani, Riyaz Patel, Jonathan Sterne, Amitava Banerjee, Alastair K. Denniston, Simon Ball, Neil J. Sebire, Nigam H. Shah, Graham R. Foster, Bryan Williams, Harry Hemingway:
An informatics consult approach for generating clinical evidence for treatment decisions. BMC Medical Informatics Decis. Mak. 21(1): 281 (2021) - 2020
- [j15]Mark F. Rogers, Tom R. Gaunt, Colin Campbell:
CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome. Bioinform. 36(12): 3637-3644 (2020)
2010 – 2019
- 2018
- [j14]Mark F. Rogers, Hashem A. Shihab, Matthew E. Mort, David N. Cooper, Tom R. Gaunt, Colin Campbell:
FATHMM-XF: accurate prediction of pathogenic point mutations via extended features. Bioinform. 34(3): 511-513 (2018) - 2017
- [j13]Emily Rose Holzinger, Shefali S. Verma, Carrie Colleen Buchanan Moore, Molly A. Hall, Rishika De, Diane Gilbert-Diamond, Matthew B. Lanktree, Nathan Pankratz, Antoinette Amuzu, Amber Burt, Caroline Dale, Scott M. Dudek, Clement E. Furlong, Tom R. Gaunt, Daniel Seung Kim, Helene Riess, Suthesh Sivapalaratnam, Vinicius Tragante, Erik P. A. van Iperen, Ariel Brautbar, David S. Carrell, David R. Crosslin, Gail P. Jarvik, Helena Kuivaniemi, Iftikhar J. Kullo, Eric B. Larson, Laura J. Rasmussen-Torvik, Gerard Tromp, Jens Baumert, Karen J. Cruickshanks, Martin Farrall, Aroon D. Hingorani, G. K. Hovingh, Marcus E. Kleber, Barbara E. Klein, Ronald Klein, Wolfgang Koenig, Leslie A. Lange, Winfried März, Kari E. North, N. Charlotte Onland-Moret, Alex P. Reiner, Philippa J. Talmud, Yvonne T. van der Schouw, James G. Wilson, Mika Kivimäki, Meena Kumari, Jason H. Moore, Fotios Drenos, Folkert W. Asselbergs, Brendan J. Keating, Marylyn D. Ritchie:
Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals. BioData Min. 10(1): 25:1-25:20 (2017) - [j12]Jie Zheng, Santiago Rodríguez, Charles Laurin, Denis Baird, Lea Trela-Larsen, Mesut A. Erzurumluoglu, Yi Zheng, Jon White, Claudia Giambartolomei, Delilah Zabaneh, Richard Morris, Meena Kumari, Juan P. Casas, Aroon D. Hingorani, David M. Evans, Tom R. Gaunt, Ian N. M. Day:
HAPRAP: a haplotype-based iterative method for statistical fine mapping using GWAS summary statistics. Bioinform. 33(1): 79-86 (2017) - [j11]Jie Zheng, Mesut A. Erzurumluoglu, Benjamin L. Elsworth, John P. Kemp, Laurence J. Howe, Philip C. Haycock, Gibran Hemani, Katherine Tansey, Charles Laurin, Early Genetics, Lifecourse Epidemiology (EAGLE) Eczema Consortium, Beate St. Pourcain, Nicole M. Warrington, Hilary K. Finucane, Alkes L. Price, Brendan K. Bulik-Sullivan, Verneri Anttila, Lavinia Paternoster, Tom R. Gaunt, David M. Evans, Benjamin M. Neale:
LD Hub: a centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis. Bioinform. 33(2): 272-279 (2017) - [j10]Hashem A. Shihab, Mark F. Rogers, Colin Campbell, Tom R. Gaunt:
HIPred: an integrative approach to predicting haploinsufficient genes. Bioinform. 33(12): 1751-1757 (2017) - [j9]Hashem A. Shihab, Mark F. Rogers, Michael Ferlaino, Colin Campbell, Tom R. Gaunt:
GTB - an online genome tolerance browser. BMC Bioinform. 18(1): 20:1-20:6 (2017) - [j8]Michael Ferlaino, Mark F. Rogers, Hashem A. Shihab, Matthew E. Mort, David N. Cooper, Tom R. Gaunt, Colin Campbell:
An integrative approach to predicting the functional effects of small indels in non-coding regions of the human genome. BMC Bioinform. 18(1): 442:1-442:8 (2017) - 2015
- [j7]Hashem A. Shihab, Mark F. Rogers, Julian Gough, Matthew E. Mort, David N. Cooper, Ian N. M. Day, Tom R. Gaunt, Colin Campbell:
An integrative approach to predicting the functional effects of non-coding and coding sequence variation. Bioinform. 31(10): 1536-1543 (2015) - [j6]Carlos Fernandez-Lozano, José Antonio Seoane Fernández, Marcos Gestal, Tom R. Gaunt, Julián Dorado, Colin Campbell:
Texture classification using feature selection and kernel-based techniques. Soft Comput. 19(9): 2469-2480 (2015) - [c4]Mark F. Rogers, Colin Campbell, Hashem A. Shihab, Tom R. Gaunt, Matthew E. Mort, David N. Cooper:
Sequential data selection for predicting the pathogenic effects of sequence variation. BIBM 2015: 639-644 - 2014
- [j5]José A. Seoane, Ian N. M. Day, Tom R. Gaunt, Colin Campbell:
A pathway-based data integration framework for prediction of disease progression. Bioinform. 30(6): 838-845 (2014) - [j4]José A. Seoane, Colin Campbell, Ian N. M. Day, Juan P. Casas, Tom R. Gaunt:
Canonical Correlation Analysis for Gene-Based Pleiotropy Discovery. PLoS Comput. Biol. 10(10) (2014) - [c3]José A. Seoane, Ian N. M. Day, Juan P. Casas, Colin Campbell, Tom R. Gaunt:
A Random Forest proximity matrix as a new measure for gene annotation. ESANN 2014 - [c2]José A. Seoane, Ian N. M. Day, Colin Campbell, Juan P. Casas, Tom R. Gaunt:
Using a Random Forest proximity measure for variable importance stratification in genotypic data. IWBBIO 2014: 1049-1060 - 2013
- [j3]Hashem A. Shihab, Julian Gough, David N. Cooper, Ian N. M. Day, Tom R. Gaunt:
Predicting the functional consequences of cancer-associated amino acid substitutions. Bioinform. 29(12): 1504-1510 (2013) - [c1]Carlos Fernandez-Lozano, José A. Seoane, Marcos Gestal, Tom R. Gaunt, Colin Campbell:
Texture Classification Using Kernel-Based Techniques. IWANN (1) 2013: 427-434
2000 – 2009
- 2007
- [j2]Tom R. Gaunt, Santiago Rodríguez, Ian N. M. Day:
Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool 'CubeX'. BMC Bioinform. 8 (2007) - 2006
- [j1]Tom R. Gaunt, Santiago Rodríguez, Carlos Zapata, Ian N. M. Day:
MIDAS: software for analysis and visualisation of interallelic disequilibrium between multiallelic markers. BMC Bioinform. 7: 227 (2006)
Coauthor Index
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