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ORCIDTim Hui-Ming Huang
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2020 – today
- 2022
[j24]Nahim Adnan
, Maryam Zand, Tim Hui-Ming Huang, Jianhua Ruan:
Construction and Evaluation of Robust Interpretation Models for Breast Cancer Metastasis Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1344-1353 (2022)
2010 – 2019
- 2014
- [j23]Md. Jamiul Jahid, Tim Hui-Ming Huang, Jianhua Ruan:
A personalized committee classification approach to improving prediction of breast cancer metastasis. Bioinform. 30(13): 1858-1866 (2014) - [j22]Zijing Mao, Chifeng Ma, Tim Hui-Ming Huang, Yidong Chen, Yufei Huang:
BIMMER: a novel algorithm for detecting differential DNA methylation regions from MBDCap-seq data. BMC Bioinform. 15(S-12): S6 (2014) - 2013
- [c10]Zijing Mao, Tim Hui-Ming Huang, Yidong Chen, Yufei Huang:
BIMMER: A Bi-layer hidden Markov model for differential methylation analysis. BIBM 2013: 99-102 - 2012
- [j21]Zhi Han, Lu Tian, Thierry Pécot, Tim Hui-Ming Huang, Raghu Machiraju, Kun Huang:
A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data. BMC Bioinform. 13(S-2): S2 (2012) - [j20]Pengyue Zhang, Raphaël Mourad, Yang Xiang, Kun Huang, Tim Hui-Ming Huang, Kenneth P. Nephew, Yunlong Liu, Lang Li:
A dynamic time order network for time-series gene expression data analysis. BMC Syst. Biol. 6(S-3): S9 (2012) - [c9]Jianhua Ruan, Md. Jamiul Jahid, Fei Gu, Chengwei Lei, Yi-Wen Huang, Ya-Ting Hsu, David G. Mutch, Chun-Liang Chen, Nameer B. Kirma, Tim Hui-Ming Huang:
Network-based classification of recurrent endometrial cancers using high-throughput DNA methylation data. BCB 2012: 418-425 - 2011
- [j19]Shuying Sun, Yi-Wen Huang, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin:
Preprocessing differential methylation hybridization microarray data. BioData Min. 4: 13 (2011) - [j18]Cenny Taslim, Tim Hui-Ming Huang, Shili Lin:
DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models. Bioinform. 27(11): 1569-1570 (2011) - [j17]Shuying Sun, Zhengyi Chen, Pearlly Yan, Yi-Wen Huang, Tim Hui-Ming Huang, Shili Lin:
Identifying hypermethylated CpG islands using a quantile regression model. BMC Bioinform. 12: 54 (2011) - [j16]Changyu Shen, Yi-Wen Huang, Yunlong Liu, Guohua Wang, Yuming Zhao, Zhiping Wang, Mingxiang Teng, Yadong Wang, David A. Flockhart, Todd C. Skaar, Pearlly Yan, Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li:
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer. BMC Syst. Biol. 5: 67 (2011) - [j15]Hatice Gulcin Ozer, Yi-Wen Huang, Jiejun Wu, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang:
Comparing Multiple Chip-Sequencing Experiments. J. Bioinform. Comput. Biol. 9(2): 269-282 (2011) - [j14]Hao Sun, Jiejun Wu, Priyankara Wikramasinghe, Sharmistha Pal, Ravi Gupta, Anirban Bhattacharyya, Francisco J. Agosto-Perez, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri:
Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq. Nucleic Acids Res. 39(1): 190-201 (2011) - [c8]Heng-Yi Wu, Yu Wang, Pengyue Zheng, Guanglong Jiang, Yunlong Liu, Tim Hui-Ming Huang, Kenneth P. Nephew, Lang Li:
An ERα/modulator regulatory network in the breast cancer cells. GENSiPS 2011: 5-8 - [c7]Cenny Taslim, Shili Lin, Kun Huang, Tim Hui-Ming Huang:
Chromatin signature analysis and prediction of genome-wide novel promoters using finite mixture model. GENSiPS 2011: 13-16 - 2010
- [j13]Fei Gu, Hang-Kai Hsu, Pei-Yin Hsu, Jiejun Wu, Yilin Ma, Jeffrey D. Parvin, Tim Hui-Ming Huang, Victor X. Jin:
Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data. BMC Syst. Biol. 4: 170 (2010) - [j12]Brian A. Kennedy, Wenqing Gao, Tim Hui-Ming Huang, Victor X. Jin:
HRTBLDb: an informative data resource for hormone receptors target binding loci. Nucleic Acids Res. 38(Database-Issue): 676-681 (2010) - [c6]Leng Han, Siyuan Zheng, Shuying Sun, Tim Hui-Ming Huang, Zhongming Zhao:
Genome-Wide DNA Methylation Profiling in 40 Breast Cancer Cell Lines. ICIC (1) 2010: 277-284
2000 – 2009
- 2009
- [j11]Cenny Taslim, Jiejun Wu, Pearlly Yan, Greg Singer, Jeffrey D. Parvin, Tim Hui-Ming Huang, Shili Lin, Kun Huang:
Comparative study on ChIP-seq data: normalization and binding pattern characterization. Bioinform. 25(18): 2334-2340 (2009) - [j10]Shuying Sun, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin:
Identifying differentially methylated genes using mixed effect and generalized least square models. BMC Bioinform. 10: 404 (2009) - [j9]Huaxia Qin, Michael W. Y. Chan, Sandya Liyanarachchi, Curtis Balch, Dustin P. Potter, Irene J. Souriraj, Alfred S. L. Cheng, Francisco J. Agosto-Perez, Elena Nikonova, Pearlly Yan, Huey-Jen Lin, Kenneth P. Nephew, Joel H. Saltz, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri:
An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules. BMC Syst. Biol. 3: 73 (2009) - [j8]Abbas Khalili, Tim Hui-Ming Huang, Shili Lin:
A robust unified approach to analyzing methylation and gene expression data. Comput. Stat. Data Anal. 53(5): 1701-1710 (2009) - [c5]Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç:
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. BIBM 2009: 392-395 - [c4]Hatice Gulcin Ozer, Doruk Bozdag, Terry Camerlengo, Jiejun Wu, Yi-Wen Huang, Timothy D. R. Hartley, Jeffrey D. Parvin, Tim Hui-Ming Huang, Ümit V. Çatalyürek, Kun Huang:
A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments. BICoB 2009: 320-330 - 2008
- [j7]Meng Li, Hyun-il Henry Paik, Curtis Balch, Yoosung Kim, Lang Li, Tim Hui-Ming Huang, Kenneth P. Nephew, Sun Kim:
Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells. Bioinform. 24(16): 1745-1748 (2008) - [j6]Wei Dai, Jens M. Teodoridis, Janet Graham, Constanze Zeller, Tim Hui-Ming Huang, Pearlly Yan, J. Keith Vass, Robert Brown, Jim Paul:
Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands. BMC Bioinform. 9 (2008) - [j5]Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin:
Probe signal correction for differential methylation hybridization experiments. BMC Bioinform. 9 (2008) - [c3]Sun Kim, Meng Li, Hyun-il Henry Paik, Kenneth P. Nephew, Huidong Shi, Robin Kramer, Dong Xu, Tim Hui-Ming Huang:
Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences. Pacific Symposium on Biocomputing 2008: 315-326 - 2007
- [j4]Zailong Wang, Pearlly Yan, Dustin P. Potter, Charis Eng, Tim Hui-Ming Huang, Shili Lin:
Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data. BMC Bioinform. 8 (2007) - 2006
- [j3]Lang Li, Alfred S. L. Cheng, Victor X. Jin, Henry H. Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim Hui-Ming Huang, Kenneth P. Nephew:
A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha. Bioinform. 22(18): 2210-2216 (2006) - [j2]Hao Sun, Saranyan K. Palaniswamy, Twyla T. Pohar, Victor X. Jin, Tim Hui-Ming Huang, Ramana V. Davuluri:
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data. Nucleic Acids Res. 34(Database-Issue): 98-103 (2006) - 2005
- [j1]Lang Li, Huidong Shi, Constantin T. Yiannoutsos, Tim Hui-Ming Huang, Kenneth P. Nephew:
Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System. J. Comput. Biol. 12(3): 370-390 (2005) - 2001
- [c2]Harpreet K. Monga, Adam L. Asare, Pearlly Yan, Tim Hui-Ming Huang, Charles William Caldwell:
Online Microarray Laboratory Information Management System (M-LIMS): Linking Health Informatics and Bioinformatics. AMIA 2001
1990 – 1999
- 1995
- [c1]James M. Keller, Paul D. Gader, Ozy Sjahputera, Charles William Caldwell, Tim Hui-Ming Huang:
A Fuzzy Logic Rule-Based System for Chromosome Recognition. CBMS 1995: 125-132
Coauthor Index
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