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2020 – today
- 2024
[j27]Shili Lin
, Cheng Chen, Gaoju Liang, Xianyong Zhang, Sheng Li:
Hybrid energy storage system and its hardware-in-loop platform for 1500-V metro DC power supply system based on voltage droop control. Int. J. Circuit Theory Appl. 52(4): 2011-2026 (2024)- 2022
- [j26]Qing Xie, Chenggong Han, Victor Jin, Shili Lin:
HiCImpute: A Bayesian hierarchical model for identifying structural zeros and enhancing single cell Hi-C data. PLoS Comput. Biol. 18(6) (2022) - 2021
- [j25]Chenggong Han, Qing Xie, Shili Lin:
Are dropout imputation methods for scRNA-seq effective for scHi-C data? Briefings Bioinform. 22(4) (2021) - [j24]Yanhui Zhang, Shili Lin, Haiping Ma, Yuanjun Guo, Wei Feng:
A Novel Pigeon-Inspired Optimized RBF Model for Parallel Battery Branch Forecasting. Complex. 2021: 8895496:1-8895496:7 (2021)
2010 – 2019
- 2019
- [j23]Jincheol Park, Shili Lin:
Evaluation and comparison of methods for recapitulation of 3D spatial chromatin structures. Briefings Bioinform. 20(4): 1205-1214 (2019) - 2017
- [j22]Jie Lv, Wenji Song, Shili Lin, Ziping Feng, Yulong Ding, Yongliang Li:
Investigation on dynamic equalisation performance of lithium battery pack management. IET Circuits Devices Syst. 11(4): 388-394 (2017) - 2016
- [j21]Deepak Nag Ayyala, David E. Frankhouser, Javkhlan-Ochir Ganbat, Guido Marcucci, Ralf Bundschuh, Pearlly Yan, Shili Lin:
Statistical methods for detecting differentially methylated regions based on MethylCap-seq data. Briefings Bioinform. 17(6): 926-937 (2016) - [j20]Jincheol Park, Shili Lin:
Impact of data resolution on three-dimensional structure inference methods. BMC Bioinform. 17: 70 (2016) - [j19]Zhenqiu Liu, Shili Lin, Nan Deng, Dermot P. B. McGovern, Steven T. Piantadosi:
Sparse Inverse Covariance Estimation with L0 Penalty for Network Construction with Omics Data. J. Comput. Biol. 23(3): 192-202 (2016) - 2015
- [j18]Meng Wang, Shili Lin:
Detecting associations of rare variants with common diseases: collapsing or haplotyping? Briefings Bioinform. 16(5): 759-768 (2015) - [j17]Zhenqiu Liu, Shili Lin, Steven T. Piantadosi:
Network construction and structure detection with metagenomic count data. BioData Min. 8: 40 (2015) - [j16]Deepak Nag Ayyala, Shili Lin:
GrammR: graphical representation and modeling of count data with application in metagenomics. Bioinform. 31(10): 1648-1654 (2015) - 2014
- [j15]Meng Wang, Shili Lin:
FamLBL: detecting rare haplotype disease association based on common SNPs using case-parent triads. Bioinform. 30(18): 2611-2618 (2014) - [j14]David E. Frankhouser, Mark Murphy, James S. Blachly, Jincheol Park, Mike W. Zoller, Javkhlan-Ochir Ganbat, John Curfman, John C. Byrd, Shili Lin, Guido Marcucci, Pearlly Yan, Ralf Bundschuh:
PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data. Bioinform. 30(24): 3567-3574 (2014) - [j13]Cenny Taslim, Shili Lin:
A Mixture Modeling Framework for Differential Analysis of High-Throughput Data. Comput. Math. Methods Medicine 2014: 758718:1-758718:9 (2014) - 2011
- [j12]Shuying Sun, Yi-Wen Huang, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin:
Preprocessing differential methylation hybridization microarray data. BioData Min. 4: 13 (2011) - [j11]Cenny Taslim, Tim Hui-Ming Huang, Shili Lin:
DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models. Bioinform. 27(11): 1569-1570 (2011) - [j10]Shuying Sun, Zhengyi Chen, Pearlly Yan, Yi-Wen Huang, Tim Hui-Ming Huang, Shili Lin:
Identifying hypermethylated CpG islands using a quantile regression model. BMC Bioinform. 12: 54 (2011) - [c2]Cenny Taslim, Shili Lin, Kun Huang, Tim Hui-Ming Huang:
Chromatin signature analysis and prediction of genome-wide novel promoters using finite mixture model. GENSiPS 2011: 13-16 - 2010
- [j9]Zhenqiu Liu, Shili Lin, Ming Tan:
Sparse Support Vector Machines with L_{p} Penalty for Biomarker Identification. IEEE ACM Trans. Comput. Biol. Bioinform. 7(1): 100-107 (2010)
2000 – 2009
- 2009
- [j8]Cenny Taslim, Jiejun Wu, Pearlly Yan, Greg Singer, Jeffrey D. Parvin, Tim Hui-Ming Huang, Shili Lin, Kun Huang:
Comparative study on ChIP-seq data: normalization and binding pattern characterization. Bioinform. 25(18): 2334-2340 (2009) - [j7]Shuying Sun, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin:
Identifying differentially methylated genes using mixed effect and generalized least square models. BMC Bioinform. 10: 404 (2009) - [j6]Abbas Khalili, Tim Hui-Ming Huang, Shili Lin:
A robust unified approach to analyzing methylation and gene expression data. Comput. Stat. Data Anal. 53(5): 1701-1710 (2009) - 2008
- [j5]Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin:
Probe signal correction for differential methylation hybridization experiments. BMC Bioinform. 9 (2008) - 2007
- [j4]Zailong Wang, Pearlly Yan, Dustin P. Potter, Charis Eng, Tim Hui-Ming Huang, Shili Lin:
Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data. BMC Bioinform. 8 (2007) - 2006
- [j3]Zhenqiu Liu, Shili Lin, Ming Tan:
Genome-Wide Tagging SNPs with Entropy-Based Monte Carlo Method. J. Comput. Biol. 13(9): 1606-1614 (2006) - 2004
- [j2]Roxana Alexandridis, Shili Lin, Mark Irwin:
Class discovery and classification of tumor samples using mixture modeling of gene expression data - a unified approach. Bioinform. 20(16): 2545-2552 (2004)
1990 – 1999
- 1997
- [j1]Shili Lin, Terence P. Speed:
An Algorithm for Haplotype Analysis. J. Comput. Biol. 4(4): 535-546 (1997) - [c1]Shili Lin, Terence P. Speed:
An algorithm for haplotype analysis. RECOMB 1997: 192-200
Coauthor Index
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