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ORCIDRalf Bundschuh
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2020 – today
- 2022
[j20]Elan Shatoff
, Ralf Bundschuh:
dsRBPBind: modeling the effect of RNA secondary structure on double-stranded RNA-protein binding. Bioinform. 38(3): 687-693 (2022)- 2020
- [j19]Elan Shatoff, Ralf Bundschuh:
Single nucleotide polymorphisms affect RNA-protein interactions at a distance through modulation of RNA secondary structures. PLoS Comput. Biol. 16(5) (2020)
2010 – 2019
- 2019
- [j18]Dengke Zhao, William D. Baez, Kurt Fredrick, Ralf Bundschuh:
RiboProP: a probabilistic ribosome positioning algorithm for ribosome profiling. Bioinform. 35(9): 1486-1493 (2019) - [j17]Blythe S. Moreland, Kenji M. Oman, Ralf Bundschuh:
A model of pulldown alignments from SssI-treated DNA improves DNA methylation prediction. BMC Bioinform. 20(1): 431:1-431:15 (2019) - 2016
- [j16]Deepak Nag Ayyala, David E. Frankhouser, Javkhlan-Ochir Ganbat, Guido Marcucci, Ralf Bundschuh, Pearlly Yan, Shili Lin:
Statistical methods for detecting differentially methylated regions based on MethylCap-seq data. Briefings Bioinform. 17(6): 926-937 (2016) - 2015
- [c10]Ralf Bundschuh:
The search for the determinants of insertional RNA editing in Physarum polycephalum mitochondrial RNAs. BICT 2015: 585-586 - 2014
- [j15]David E. Frankhouser, Mark Murphy, James S. Blachly, Jincheol Park, Mike W. Zoller, Javkhlan-Ochir Ganbat, John Curfman, John C. Byrd, Shili Lin, Guido Marcucci, Pearlly Yan, Ralf Bundschuh:
PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data. Bioinform. 30(24): 3567-3574 (2014) - 2012
- [j14]Cai Chen, David Frankhouser, Ralf Bundschuh:
Comparison of Insertional RNA Editing in Myxomycetes. PLoS Comput. Biol. 8(2) (2012) - 2011
- [j13]Yuheng Li, Nicholas Chia, Mario Lauria, Ralf Bundschuh:
A performance enhanced PSI-BLAST based on hybrid alignment. Bioinform. 27(1): 31-37 (2011) - [c9]Benjamin Rodriguez, Hok-Hei Tam, David Frankhouser, Michael Trimarchi, Mark Murphy, Chris Kuo, Deval Parikh, Bryan Ball, Sebastian Schwind, John Curfman, William Blum, Guido Marcucci, Pearlly Yan, Ralf Bundschuh:
A scalable, flexible workflow for MethylCap-seq data analysis. GENSiPS 2011: 1-4 - 2010
- [j12]Robert A. Forties, Ralf Bundschuh:
Modeling the interplay of single-stranded binding proteins and nucleic acid secondary structure. Bioinform. 26(1): 61-67 (2010)
2000 – 2009
- 2009
- [j11]Marianne M. Lee, Michael K. Chan, Ralf Bundschuh:
SIB-BLAST: a web server for improved delineation of true and false positives in PSI-BLAST searches. Nucleic Acids Res. 37(Web-Server-Issue): 53-56 (2009) - 2008
- [j10]Marianne M. Lee, Michael K. Chan, Ralf Bundschuh:
Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches. Bioinform. 24(11): 1339-1343 (2008) - [j9]Christina Beargie, Tsunglin Liu, Mark Corriveau, Ha Youn Lee, Jonatha Gott, Ralf Bundschuh:
Genome annotation in the presence of insertional RNA editing. Bioinform. 24(22): 2571-2578 (2008) - 2007
- [j8]Farhat Habib, Andrew D. Johnson, Ralf Bundschuh, Daniel Janies:
Large scale genotype-phenotype correlation analysis based on phylogenetic trees. Bioinform. 23(7): 785-788 (2007) - [j7]Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt:
Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics. J. Comput. Biol. 14(5): 655-668 (2007) - 2006
- [j6]Nicholas Chia, Ralf Bundschuh:
A Practical Approach to Significance Assessment in Alignment with Gaps. J. Comput. Biol. 13(2): 429-441 (2006) - [c8]Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt:
Alignment Statistics for Long-Range Correlated Genomic Sequences. RECOMB 2006: 426-440 - 2005
- [c7]Yuheng Li, Mario Lauria, Ralf Bundschuh:
Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches. BIBE 2005: 153-160 - [c6]Nicholas Chia, Ralf Bundschuh:
A Practical Approach to Significance Assessment in Alignment with Gaps. RECOMB 2005: 474-488 - 2004
- [j5]Ralf Bundschuh:
Computational prediction of RNA editing sites. Bioinform. 20(17): 3214-3220 (2004) - [j4]Yuheng Li, Mario Lauria, Ralf Bundschuh:
Using hybrid alignment for iterative sequence database searches. Concurr. Pract. Exp. 16(9): 841-853 (2004) - 2003
- [c5]Yuheng Li, Mario Lauria, Ralf Bundschuh:
Using Hybrid Alignment for Iterative Sequence Database Searches. IPDPS 2003: 152 - 2002
- [j3]Yi-Kuo Yu, Ralf Bundschuh, Terence Hwa:
Hybrid alignment: high-performance with universal statistics. Bioinform. 18(6): 864-872 (2002) - [j2]Ralf Bundschuh:
Rapid Significance Estimation in Local Sequence Alignment with Gaps. J. Comput. Biol. 9(2): 243-260 (2002) - 2001
- [c4]Ralf Bundschuh:
Rapid significance estimation in local sequence alignment with gaps. RECOMB 2001: 77-85 - 2000
- [j1]Ralf Bundschuh, Terence Hwa:
An analytic study of the phase transition line in local sequence alignment with gaps. Discret. Appl. Math. 104(1-3): 113-142 (2000) - [c3]Ralf Bundschuh:
An analytic approach to significance assessment in local sequence alignment with gaps. RECOMB 2000: 86-95
1990 – 1999
- 1999
- [c2]Rolf Olsen, Ralf Bundschuh, Terence Hwa:
Rapid Assessment of Extremal Statistics for Gapped Local Alignment. ISMB 1999: 211-222 - 1998
- [c1]Ralf Bundschuh, Terence Hwa:
Detectability of Sequence Homology by DNA Hybridization. German Conference on Bioinformatics 1998
Coauthor Index
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