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ORCIDAttila Gürsoy
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- affiliation: Koç University, Istanbul, Turkey
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2020 – today
- 2024
[j26]Damla Ovek
, Ozlem Keskin, Attila Gürsoy:
ProInterVal: Validation of Protein-Protein Interfaces through Learned Interface Representations. J. Chem. Inf. Model. 64(8): 2979-2987 (2024)- [j25]Fatma Cankara, Simge Senyuz, Ahenk Zeynep Sayin, Attila Gürsoy, Ozlem Keskin:
DiPPI: A Curated Data Set for Drug-like Molecules in Protein-Protein Interfaces. J. Chem. Inf. Model. 64(13): 5041-5051 (2024) - 2023
- [c16]Melisa Ece Zeylan, Attila Gürsoy, Simge Senyuz, Ozlem Keskin:
The interaction between mutated DYRK1A and APP suggests a potential target for vascular cognitive impairment. BIBM 2023: 1-7 - 2022
- [j24]Damla Ovek, Ameer Taweel, Zeynep Abali, Ece Tezsezen, Yunus Emre Koroglu, Chung-Jung Tsai, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy:
SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2-human mimicry and interactions. Bioinform. 38(5): 1455-1457 (2022) - [j23]Hansaim Lim, Chung-Jung Tsai, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy:
HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry. Bioinform. 38(21): 4962-4965 (2022) - 2021
- [d10]Laxmikant V. Kalé, Bilge Acun, Seonmyeong Bak, Aaron T. Becker, Milind A. Bhandarkar, Nitin Bhat, Abhinav Bhatele, Eric J. Bohm, Cyril Bordage, Robert Brunner, Ronak Buch, Sayantan Chakravorty, Kavitha Chandrasekar, Jaemin Choi, Michael Denardo, Jayant DeSouza, Matthias Diener, Harshit Dokania, Isaac Dooley, Wayne Fenton, Zane Fink, Juan J. Galvez, Pathikrit Ghosh, Filippo Gioachin, Abhishek Gupta, Gagan Gupta, Manish Gupta, Attila Gürsoy, Vipul Harsh, Fang Hu, Chao Huang, Narain Jagathesan, Nikhil Jain, Pritish Jetley, Prateek Jindal, Raghavendra Kanakagiri, Gregory A. Koenig, Sanjeev Krishnan, Sameer Kumar, David M. Kunzman, Michael Lang, Akhil Langer, Orion Sky Lawlor, Chee Wai Lee, Jonathan Lifflander, Karthik Mahesh, Celso L. Mendes, Harshitha Menon, Chao Mei, Esteban Meneses, Eric Mikida, Phil Miller, Ryan M. Mokos, Venkatasubrahmanian Narayanan, Xiang Ni, Kevin Nomura, Sameer Paranjpye, Parthasarathy Ramachandran, Balkrishna Ramkumar, Evan Ramos, Michael P. Robson, Neelam Saboo, Vikram A. Saletore, Osman Sarood, Karthik Senthil, Nimish Shah, Wei Wennie Shu, Amitabh Sinha, Yanhua Sun, Zehra Sura, Justin Josef Szaday, Ehsan Totoni, Krishnan Varadarajan, Ramprasad Venkataraman, Jackie Wang, Lukasz Wesolowski, Sam White, Terry Wilmarth, Jeff Wright, Josh Yelon, Gengbin Zheng:
UIUC-PPL/charm: v7.0.0-rc1. Version v7.0.0-rc1. Zenodo, 2021 [all versions]
- [d9]Laxmikant V. Kalé, Bilge Acun, Seonmyeong Bak, Aaron T. Becker, Milind A. Bhandarkar, Nitin Bhat, Abhinav Bhatele, Eric J. Bohm, Cyril Bordage, Robert Brunner, Ronak Buch, Sayantan Chakravorty, Kavitha Chandrasekar, Jaemin Choi, Michael Denardo, Jayant DeSouza, Matthias Diener, Harshit Dokania, Isaac Dooley, Wayne Fenton, Zane Fink, Juan J. Galvez, Pathikrit Ghosh, Filippo Gioachin, Abhishek Gupta, Gagan Gupta, Manish Gupta, Attila Gürsoy, Vipul Harsh, Fang Hu, Chao Huang, Narain Jagathesan, Nikhil Jain, Pritish Jetley, Prateek Jindal, Raghavendra Kanakagiri, Gregory A. Koenig, Sanjeev Krishnan, Sameer Kumar, David M. Kunzman, Michael Lang, Akhil Langer, Orion Sky Lawlor, Chee Wai Lee, Jonathan Lifflander, Karthik Mahesh, Celso L. Mendes, Harshitha Menon, Chao Mei, Esteban Meneses, Eric Mikida, Phil Miller, Ryan M. Mokos, Venkatasubrahmanian Narayanan, Xiang Ni, Kevin Nomura, Sameer Paranjpye, Parthasarathy Ramachandran, Balkrishna Ramkumar, Evan Ramos, Michael P. Robson, Neelam Saboo, Vikram A. Saletore, Osman Sarood, Karthik Senthil, Nimish Shah, Wei Wennie Shu, Amitabh Sinha, Yanhua Sun, Zehra Sura, Justin Josef Szaday, Ehsan Totoni, Krishnan Varadarajan, Ramprasad Venkataraman, Jackie Wang, Lukasz Wesolowski, Sam White, Terry Wilmarth, Jeff Wright, Josh Yelon, Gengbin Zheng:
UIUC-PPL/charm: v7.0.0-rc2. Version v7.0.0-rc2. Zenodo, 2021 [all versions] - [d8]Laxmikant V. Kalé, Bilge Acun, Seonmyeong Bak, Aaron T. Becker, Milind A. Bhandarkar, Nitin Bhat, Abhinav Bhatele, Eric J. Bohm, Cyril Bordage, Robert Brunner, Ronak Buch, Sayantan Chakravorty, Kavitha Chandrasekar, Jaemin Choi, Michael Denardo, Jayant DeSouza, Matthias Diener, Harshit Dokania, Isaac Dooley, Wayne Fenton, Zane Fink, Juan J. Galvez, Pathikrit Ghosh, Filippo Gioachin, Abhishek Gupta, Gagan Gupta, Manish Gupta, Attila Gürsoy, Vipul Harsh, Fang Hu, Chao Huang, Narain Jagathesan, Nikhil Jain, Pritish Jetley, Prateek Jindal, Raghavendra Kanakagiri, Gregory A. Koenig, Sanjeev Krishnan, Sameer Kumar, David M. Kunzman, Michael Lang, Akhil Langer, Orion Sky Lawlor, Chee Wai Lee, Jonathan Lifflander, Karthik Mahesh, Celso L. Mendes, Harshitha Menon, Chao Mei, Esteban Meneses, Eric Mikida, Phil Miller, Ryan M. Mokos, Venkatasubrahmanian Narayanan, Xiang Ni, Kevin Nomura, Sameer Paranjpye, Parthasarathy Ramachandran, Balkrishna Ramkumar, Evan Ramos, Michael P. Robson, Neelam Saboo, Vikram A. Saletore, Osman Sarood, Karthik Senthil, Nimish Shah, Wei Wennie Shu, Amitabh Sinha, Yanhua Sun, Zehra Sura, Justin Josef Szaday, Ehsan Totoni, Krishnan Varadarajan, Ramprasad Venkataraman, Jackie Wang, Lukasz Wesolowski, Sam White, Terry Wilmarth, Jeff Wright, Josh Yelon, Gengbin Zheng:
UIUC-PPL/charm: Charm++ version 7.0.0. Version v7.0.0. Zenodo, 2021 [all versions] - 2020
- [j22]Jackson Weako, Abdullahi Ibrahim Uba, Ozlem Keskin, Attila Gürsoy, Kemal Yelekçi:
Identification of potential inhibitors of human methionine aminopeptidase (type II) for cancer therapy: Structure-based virtual screening, ADMET prediction and molecular dynamics studies. Comput. Biol. Chem. 86: 107244 (2020) - [c15]Waris Gill, Öznur Özkasap, Attila Gürsoy:
Intelligent Edge Computing: State-of-the-art Techniques and Applications. SIU 2020: 1-4 - [p3]Farideh Halakou, Attila Gürsoy, Ozlem Keskin:
Embedding Alternative Conformations of Proteins in Protein-Protein Interaction Networks. Protein-Protein Interaction Networks 2020: 113-124 - [d7]Laxmikant V. Kalé, Bilge Acun, Seonmyeong Bak, Aaron T. Becker, Milind A. Bhandarkar, Nitin Bhat, Abhinav Bhatele, Eric J. Bohm, Cyril Bordage, Robert Brunner, Ronak Buch, Sayantan Chakravorty, Kavitha Chandrasekar, Jaemin Choi, Michael Denardo, Jayant DeSouza, Matthias Diener, Harshit Dokania, Isaac Dooley, Wayne Fenton, Juan J. Galvez, Filippo Gioachin, Abhishek Gupta, Gagan Gupta, Manish Gupta, Attila Gürsoy, Vipul Harsh, Fang Hu, Chao Huang, Narain Jagathesan, Nikhil Jain, Pritish Jetley, Prateek Jindal, Raghavendra Kanakagiri, Gregory A. Koenig, Sanjeev Krishnan, Sameer Kumar, David M. Kunzman, Michael Lang, Akhil Langer, Orion Sky Lawlor, Chee Wai Lee, Jonathan Lifflander, Karthik Mahesh, Celso L. Mendes, Harshitha Menon, Chao Mei, Esteban Meneses, Eric Mikida, Phil Miller, Ryan M. Mokos, Venkatasubrahmanian Narayanan, Xiang Ni, Kevin Nomura, Sameer Paranjpye, Parthasarathy Ramachandran, Balkrishna Ramkumar, Evan Ramos, Michael P. Robson, Neelam Saboo, Vikram A. Saletore, Osman Sarood, Karthik Senthil, Nimish Shah, Wei Wennie Shu, Amitabh Sinha, Yanhua Sun, Zehra Sura, Ehsan Totoni, Krishnan Varadarajan, Ramprasad Venkataraman, Jackie Wang, Lukasz Wesolowski, Sam White, Terry Wilmarth, Jeff Wright, Josh Yelon, Gengbin Zheng:
UIUC-PPL/charm: v6.10.0. Version v6.10.0. Zenodo, 2020 [all versions] - [d6]Laxmikant V. Kalé, Bilge Acun, Seonmyeong Bak, Aaron T. Becker, Milind A. Bhandarkar, Nitin Bhat, Abhinav Bhatele, Eric J. Bohm, Cyril Bordage, Robert Brunner, Ronak Buch, Sayantan Chakravorty, Kavitha Chandrasekar, Jaemin Choi, Michael Denardo, Jayant DeSouza, Matthias Diener, Harshit Dokania, Isaac Dooley, Wayne Fenton, Juan J. Galvez, Filippo Gioachin, Abhishek Gupta, Gagan Gupta, Manish Gupta, Attila Gürsoy, Vipul Harsh, Fang Hu, Chao Huang, Narain Jagathesan, Nikhil Jain, Pritish Jetley, Prateek Jindal, Raghavendra Kanakagiri, Gregory A. Koenig, Sanjeev Krishnan, Sameer Kumar, David M. Kunzman, Michael Lang, Akhil Langer, Orion Sky Lawlor, Chee Wai Lee, Jonathan Lifflander, Karthik Mahesh, Celso L. Mendes, Harshitha Menon, Chao Mei, Esteban Meneses, Eric Mikida, Phil Miller, Ryan M. Mokos, Venkatasubrahmanian Narayanan, Xiang Ni, Kevin Nomura, Sameer Paranjpye, Parthasarathy Ramachandran, Balkrishna Ramkumar, Evan Ramos, Michael P. Robson, Neelam Saboo, Vikram A. Saletore, Osman Sarood, Karthik Senthil, Nimish Shah, Wei Wennie Shu, Amitabh Sinha, Yanhua Sun, Zehra Sura, Ehsan Totoni, Krishnan Varadarajan, Ramprasad Venkataraman, Jackie Wang, Lukasz Wesolowski, Sam White, Terry Wilmarth, Jeff Wright, Josh Yelon, Gengbin Zheng:
UIUC-PPL/charm: v6.10.1. Version v6.10.1. Zenodo, 2020 [all versions] - [d5]Laxmikant V. Kalé, Bilge Acun, Seonmyeong Bak, Aaron T. Becker, Milind A. Bhandarkar, Nitin Bhat, Abhinav Bhatele, Eric J. Bohm, Cyril Bordage, Robert Brunner, Ronak Buch, Sayantan Chakravorty, Kavitha Chandrasekar, Jaemin Choi, Michael Denardo, Jayant DeSouza, Matthias Diener, Harshit Dokania, Isaac Dooley, Wayne Fenton, Juan J. Galvez, Filippo Gioachin, Abhishek Gupta, Gagan Gupta, Manish Gupta, Attila Gürsoy, Vipul Harsh, Fang Hu, Chao Huang, Narain Jagathesan, Nikhil Jain, Pritish Jetley, Prateek Jindal, Raghavendra Kanakagiri, Gregory A. Koenig, Sanjeev Krishnan, Sameer Kumar, David M. Kunzman, Michael Lang, Akhil Langer, Orion Sky Lawlor, Chee Wai Lee, Jonathan Lifflander, Karthik Mahesh, Celso L. Mendes, Harshitha Menon, Chao Mei, Esteban Meneses, Eric Mikida, Phil Miller, Ryan M. Mokos, Venkatasubrahmanian Narayanan, Xiang Ni, Kevin Nomura, Sameer Paranjpye, Parthasarathy Ramachandran, Balkrishna Ramkumar, Evan Ramos, Michael P. Robson, Neelam Saboo, Vikram A. Saletore, Osman Sarood, Karthik Senthil, Nimish Shah, Wei Wennie Shu, Amitabh Sinha, Yanhua Sun, Zehra Sura, Ehsan Totoni, Krishnan Varadarajan, Ramprasad Venkataraman, Jackie Wang, Lukasz Wesolowski, Sam White, Terry Wilmarth, Jeff Wright, Josh Yelon, Gengbin Zheng:
UIUC-PPL/charm: Charm++ version 6.10.2. Version v6.10.2. Zenodo, 2020 [all versions] - [d4]Laxmikant V. Kalé, Bilge Acun, Seonmyeong Bak, Aaron T. Becker, Milind A. Bhandarkar, Nitin Bhat, Abhinav Bhatele, Eric J. Bohm, Cyril Bordage, Robert Brunner, Ronak Buch, Sayantan Chakravorty, Kavitha Chandrasekar, Jaemin Choi, Michael Denardo, Jayant DeSouza, Matthias Diener, Harshit Dokania, Isaac Dooley, Wayne Fenton, Juan J. Galvez, Filippo Gioachin, Abhishek Gupta, Gagan Gupta, Manish Gupta, Attila Gürsoy, Vipul Harsh, Fang Hu, Chao Huang, Narain Jagathesan, Nikhil Jain, Pritish Jetley, Prateek Jindal, Raghavendra Kanakagiri, Gregory A. Koenig, Sanjeev Krishnan, Sameer Kumar, David M. Kunzman, Michael Lang, Akhil Langer, Orion Sky Lawlor, Chee Wai Lee, Jonathan Lifflander, Karthik Mahesh, Celso L. Mendes, Harshitha Menon, Chao Mei, Esteban Meneses, Eric Mikida, Phil Miller, Ryan M. Mokos, Venkatasubrahmanian Narayanan, Xiang Ni, Kevin Nomura, Sameer Paranjpye, Parthasarathy Ramachandran, Balkrishna Ramkumar, Evan Ramos, Michael P. Robson, Neelam Saboo, Vikram A. Saletore, Osman Sarood, Karthik Senthil, Nimish Shah, Wei Wennie Shu, Amitabh Sinha, Yanhua Sun, Zehra Sura, Ehsan Totoni, Krishnan Varadarajan, Ramprasad Venkataraman, Jackie Wang, Lukasz Wesolowski, Sam White, Terry Wilmarth, Jeff Wright, Josh Yelon, Gengbin Zheng:
UIUC-PPL/charm: v6.11.0-beta1. Version v6.11.0-beta1. Zenodo, 2020 [all versions]
2010 – 2019
- 2019
- [j21]Cansu Dincer, Tugba Turkoglu Kaya, Ozlem Keskin, Attila Gürsoy, Nurcan Tuncbag:
3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients. PLoS Comput. Biol. 15(9) (2019) - [d3]Laxmikant V. Kalé, Bilge Acun, Seonmyeong Bak, Aaron T. Becker, Milind A. Bhandarkar, Nitin Bhat, Abhinav Bhatele, Eric J. Bohm, Cyril Bordage, Robert Brunner, Ronak Buch, Sayantan Chakravorty, Kavitha Chandrasekar, Jaemin Choi, Michael Denardo, Jayant DeSouza, Matthias Diener, Harshit Dokania, Isaac Dooley, Wayne Fenton, Juan J. Galvez, Filippo Gioachin, Abhishek Gupta, Gagan Gupta, Manish Gupta, Attila Gürsoy, Vipul Harsh, Fang Hu, Chao Huang, Narain Jagathesan, Nikhil Jain, Pritish Jetley, Prateek Jindal, Raghavendra Kanakagiri, Gregory A. Koenig, Sanjeev Krishnan, Sameer Kumar, David M. Kunzman, Michael Lang, Akhil Langer, Orion Sky Lawlor, Chee Wai Lee, Jonathan Lifflander, Karthik Mahesh, Celso L. Mendes, Harshitha Menon, Chao Mei, Esteban Meneses, Eric Mikida, Phil Miller, Ryan M. Mokos, Venkatasubrahmanian Narayanan, Xiang Ni, Kevin Nomura, Sameer Paranjpye, Parthasarathy Ramachandran, Balkrishna Ramkumar, Evan Ramos, Michael P. Robson, Neelam Saboo, Vikram A. Saletore, Osman Sarood, Karthik Senthil, Nimish Shah, Wei Wennie Shu, Amitabh Sinha, Yanhua Sun, Zehra Sura, Ehsan Totoni, Krishnan Varadarajan, Ramprasad Venkataraman, Jackie Wang, Lukasz Wesolowski, Sam White, Terry Wilmarth, Jeff Wright, Josh Yelon, Gengbin Zheng:
UIUC-PPL/charm: v6.10.0-beta1. Version v6.10.0-beta1. Zenodo, 2019 [all versions] - [d2]Laxmikant V. Kalé, Bilge Acun, Seonmyeong Bak, Aaron T. Becker, Milind A. Bhandarkar, Nitin Bhat, Abhinav Bhatele, Eric J. Bohm, Cyril Bordage, Robert Brunner, Ronak Buch, Sayantan Chakravorty, Kavitha Chandrasekar, Jaemin Choi, Michael Denardo, Jayant DeSouza, Matthias Diener, Harshit Dokania, Isaac Dooley, Wayne Fenton, Juan J. Galvez, Filippo Gioachin, Abhishek Gupta, Gagan Gupta, Manish Gupta, Attila Gürsoy, Vipul Harsh, Fang Hu, Chao Huang, Narain Jagathesan, Nikhil Jain, Pritish Jetley, Prateek Jindal, Raghavendra Kanakagiri, Gregory A. Koenig, Sanjeev Krishnan, Sameer Kumar, David M. Kunzman, Michael Lang, Akhil Langer, Orion Sky Lawlor, Chee Wai Lee, Jonathan Lifflander, Karthik Mahesh, Celso L. Mendes, Harshitha Menon, Chao Mei, Esteban Meneses, Eric Mikida, Phil Miller, Ryan M. Mokos, Venkatasubrahmanian Narayanan, Xiang Ni, Kevin Nomura, Sameer Paranjpye, Parthasarathy Ramachandran, Balkrishna Ramkumar, Evan Ramos, Michael P. Robson, Neelam Saboo, Vikram A. Saletore, Osman Sarood, Karthik Senthil, Nimish Shah, Wei Wennie Shu, Amitabh Sinha, Yanhua Sun, Zehra Sura, Ehsan Totoni, Krishnan Varadarajan, Ramprasad Venkataraman, Jackie Wang, Lukasz Wesolowski, Sam White, Terry Wilmarth, Jeff Wright, Josh Yelon, Gengbin Zheng:
UIUC-PPL/charm: v6.10.0-rc. Version v6.10.0-rc. Zenodo, 2019 [all versions] - [d1]Laxmikant V. Kalé, Bilge Acun, Seonmyeong Bak, Aaron T. Becker, Milind A. Bhandarkar, Nitin Bhat, Abhinav Bhatele, Eric J. Bohm, Cyril Bordage, Robert Brunner, Ronak Buch, Sayantan Chakravorty, Kavitha Chandrasekar, Jaemin Choi, Michael Denardo, Jayant DeSouza, Matthias Diener, Harshit Dokania, Isaac Dooley, Wayne Fenton, Juan J. Galvez, Filippo Gioachin, Abhishek Gupta, Gagan Gupta, Manish Gupta, Attila Gürsoy, Vipul Harsh, Fang Hu, Chao Huang, Narain Jagathesan, Nikhil Jain, Pritish Jetley, Prateek Jindal, Raghavendra Kanakagiri, Gregory A. Koenig, Sanjeev Krishnan, Sameer Kumar, David M. Kunzman, Michael Lang, Akhil Langer, Orion Sky Lawlor, Chee Wai Lee, Jonathan Lifflander, Karthik Mahesh, Celso L. Mendes, Harshitha Menon, Chao Mei, Esteban Meneses, Eric Mikida, Phil Miller, Ryan M. Mokos, Venkatasubrahmanian Narayanan, Xiang Ni, Kevin Nomura, Sameer Paranjpye, Parthasarathy Ramachandran, Balkrishna Ramkumar, Evan Ramos, Michael P. Robson, Neelam Saboo, Vikram A. Saletore, Osman Sarood, Karthik Senthil, Nimish Shah, Wei Wennie Shu, Amitabh Sinha, Yanhua Sun, Zehra Sura, Ehsan Totoni, Krishnan Varadarajan, Ramprasad Venkataraman, Jackie Wang, Lukasz Wesolowski, Sam White, Terry Wilmarth, Jeff Wright, Josh Yelon, Gengbin Zheng:
UIUC-PPL/charm: v6.10.0-rc2. Version v6.10.0-rc2. Zenodo, 2019 [all versions] - 2018
- [j20]E. Sila Ozdemir, Attila Gürsoy, Ozlem Keskin:
Analysis of single amino acid variations in singlet hot spots of protein-protein interfaces. Bioinform. 34(17): i795-i801 (2018) - 2017
- [c14]Farideh Halakou, Attila Gürsoy, Emel Sen Kilic, Ozlem Keskin:
Topological, functional, and structural analyses of protein-protein interaction networks of breast cancer lung and brain metastases. CIBCB 2017: 1-7 - 2014
- [j19]Alper Baspinar, Engin Cukuroglu, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy:
PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes. Nucleic Acids Res. 42(Webserver-Issue): 285-289 (2014) - [j18]Saliha Ece Acuner Ozbabacan, Attila Gürsoy, Ruth Nussinov, Ozlem Keskin:
The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer. PLoS Comput. Biol. 10(2) (2014) - [c13]Deniz Demircioglu, Ozlem Keskin, Attila Gürsoy:
Modeling Structural Protein Interaction Networks for Betweenness Analysis. ISCIS 2014: 367-376 - 2012
- [j17]Billur Engin, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy:
A Strategy Based on Protein-Protein Interface Motifs May Help in Identifying Drug Off-Targets. J. Chem. Inf. Model. 52(8): 2273-2286 (2012) - [j16]Engin Cukuroglu, Attila Gürsoy, Ozlem Keskin:
HotRegion: a database of predicted hot spot clusters. Nucleic Acids Res. 40(Database-Issue): 829-833 (2012) - 2010
- [j15]Sibel Kalyoncu, Ozlem Keskin, Attila Gürsoy:
Interaction prediction and classification of PDZ domains. BMC Bioinform. 11: 357 (2010) - [j14]Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy:
HotPoint: hot spot prediction server for protein interfaces. Nucleic Acids Res. 38(Web-Server-Issue): 402-406 (2010)
2000 – 2009
- 2009
- [j13]Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gürsoy, Ruth Nussinov:
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. Briefings Bioinform. 10(3): 217-232 (2009) - [j12]Nurcan Tuncbag, Attila Gürsoy, Ozlem Keskin:
Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. Bioinform. 25(12): 1513-1520 (2009) - [j11]Gozde Kar, Attila Gürsoy, Ozlem Keskin:
Human Cancer Protein-Protein Interaction Network: A Structural Perspective. PLoS Comput. Biol. 5(12) (2009) - 2008
- [j10]Emre Guney, Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy:
HotSprint: database of computational hot spots in protein interfaces. Nucleic Acids Res. 36(Database-Issue): 662-666 (2008) - [p2]Ozlem Keskin, Attila Gürsoy, Ruth Nussinov:
Principles of Protein Recognition and Properties of Protein-protein Interfaces. Protein-protein Interactions and Networks 2008: 53-65 - 2007
- [j9]Omer Ozan Sonmez, Attila Gürsoy:
A Novel Economic-Based Scheduling Heuristic for Computational Grids. Int. J. High Perform. Comput. Appl. 21(1): 21-29 (2007) - 2006
- [c12]Osman N. Yogurtçu, Engin Erzin, Attila Gürsoy:
Extracting Gene Regulation Information from Microarray Time-Series Data Using Hidden Markov Models. ISCIS 2006: 144-153 - 2005
- [j8]A. Selim Aytuna, Attila Gürsoy, Ozlem Keskin:
Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces. Bioinform. 21(12): 2850-2855 (2005) - [j7]Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gürsoy:
PRISM: protein interactions by structural matching. Nucleic Acids Res. 33(Web-Server-Issue): 331-336 (2005) - [j6]Ali Kemal Sinop, Tolga Abaci, Ümit Akkus, Attila Gürsoy, Ugur Güdükbay:
PHR: A Parallel Hierarchical Radiosity System with Dynamic Load Balancing. J. Supercomput. 31(3): 249-263 (2005) - [c11]Omer Ozan Sonmez, Attila Gürsoy:
Comparison of Pricing Policies for a Computational Grid Market. PPAM 2005: 766-773 - 2004
- [j5]Emek Demir, Ozgun Babur, Ugur Dogrusöz, Attila Gürsoy, A. Ayaz, Gürcan Gülesir, Gurkan Nisanci, Rengül Çetin-Atalay:
An ontology for collaborative construction and analysis of cellular pathways. Bioinform. 20(3): 349-356 (2004) - [j4]Ahmet Palazoglu, Attila Gürsoy, Yaman Arkun, Burak Erman:
Folding Dynamics of Proteins from Denatured to Native State: Principal Component Analysis. J. Comput. Biol. 11(6): 1149-1168 (2004) - [j3]Attila Gürsoy, Laxmikant V. Kalé:
Performance and modularity benefits of message-driven execution. J. Parallel Distributed Comput. 64(4): 461-480 (2004) - 2003
- [c10]A. Kocatas, Attila Gürsoy, Rengül Çetin-Atalay:
Application of Data Mining Techniques to Protein-Protein Interaction Prediction. ISCIS 2003: 316-323 - [c9]Attila Gürsoy:
Data Decomposition for Parallel K-means Clustering. PPAM 2003: 241-248 - 2002
- [j2]Emek Demir, Ozgun Babur, Ugur Dogrusöz, Attila Gürsoy, Gurkan Nisanci, Rengül Çetin-Atalay, Mehmet Ozturk:
PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways. Bioinform. 18(7): 996-1003 (2002) - 2001
- [c8]Attila Gürsoy, Ilker Cengiz:
Parallel Pruning for K-Means Clustering on Shared Memory Architectures. Euro-Par 2001: 321-325 - 2000
- [c7]Attila Gürsoy, Murat Atun:
Neighbourhood Preserving Load Balancing: A Self-Organizing Approach. Euro-Par 2000: 234-241
1990 – 1999
- 1999
- [c6]R. Sireli, Attila Gürsoy:
Parallel Hierarchical Radiosity. PDPTA 1999: 1634-1640 - [c5]Attila Gürsoy, Ilker Cengiz:
Mechanisms for Programming SMP Clusters. PDPTA 1999: 1723-1729 - [p1]James C. Phillips, Robert Brunner, Aritomo Shinozaki, Milind A. Bhandarkar, Neal Krawetz, Attila Gürsoy, Laxmikant V. Kalé, Robert D. Skeel, Klaus Schulten:
Avoiding Algorithmic Obfuscation in a Message-Driven Parallel MD Code. Computational Molecular Dynamics 1999: 472-482 - 1996
- [j1]Mark T. Nelson, William Humphrey, Attila Gürsoy, Andrew Dalke, Laxmikant V. Kalé, Robert D. Skeel, Klaus Schulten:
NAMD: a Parallel, Object-Oriented Molecular Dynamics Program. Int. J. High Perform. Comput. Appl. 10(4): 251-268 (1996) - [c4]Attila Gürsoy, Laxmikant V. Kalé:
Simulating Message-Driven Programs. ICPP, Vol. 3 1996: 223-230 - 1995
- [c3]Laxmikant V. Kalé, Attila Gürsoy:
Modularity, Reuse and Efficiency with Message-Driven Libraries. PP 1995: 738-743 - 1994
- [c2]Attila Gürsoy, Laxmikant V. Kalé:
Dagger: Combining Benefits of Synchronous and Asynchronous Communication Styles. IPPS 1994: 590-596 - 1991
- [c1]Attila Gürsoy, Laxmikant V. Kalé:
High level support for divide-and-conquer parallelism. SC 1991: 283-292
Coauthor Index
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