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ORCIDGeoffrey J. Barton
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2020 – today
- 2022
[j43]Mihaly Varadi
, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar:
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022)- [j42]Stuart A. MacGowan, Michael I. Barton, Mikhail Kutuzov, Omer Dushek, P. Anton van der Merwe, Geoffrey J. Barton:
Missense variants in human ACE2 strongly affect binding to SARS-CoV-2 Spike providing a mechanism for ACE2 mediated genetic risk in Covid-19: A case study in affinity predictions of interface variants. PLoS Comput. Biol. 18(3) (2022) - 2021
- [j41]Javier S. Utgés, Maxim I. Tsenkov, Noah J. M. Dietrich, Stuart A. MacGowan, Geoffrey J. Barton:
Ankyrin repeats in context with human population variation. PLoS Comput. Biol. 17(8) (2021) - 2020
- [j40]Mihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan, Henry J. Martell, Stuart A. MacGowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar:
PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. 48(Database-Issue): D344-D353 (2020)
2010 – 2019
- 2019
- [j39]Kimon Froussios, Nick J. Schurch, Katarzyna Mackinnon, Marek Gierlinski, Céline Duc, Gordon G. Simpson, Geoffrey J. Barton:
How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana. Bioinform. 35(18): 3372-3377 (2019) - [i2]Kimon Froussios, Kira Mourão, Gordon G. Simpson, Geoffrey J. Barton, Nicholas J. Schurch:
Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq. F1000Research 8: 213 (2019) - [i1]Kira Mourão, Nicholas J. Schurch, Radek Lucoszek, Kimon Froussios, Katarzyna Mackinnon, Céline Duc, Gordon G. Simpson, Geoffrey J. Barton:
Detection and mitigation of spurious antisense expression with RoSA. F1000Research 8: 819 (2019) - 2018
- [j38]Peter V. Troshin, James B. Procter, Alexander Sherstnev, Daniel L. Barton, Fábio Madeira, Geoffrey J. Barton:
JABAWS 2.2 distributed web services for Bioinformatics: protein disorder, conservation and RNA secondary structure. Bioinform. 34(11): 1939-1940 (2018) - 2016
- [j37]Joseph Ward, Christian Cole, Melanie Febrer, Geoffrey J. Barton:
AlmostSignificant: simplifying quality control of high-throughput sequencing data. Bioinform. 32(24): 3850-3851 (2016) - 2015
- [j36]Fábio Madeira, Michele Tinti, Gavuthami Murugesan, Emily Berrett, Margaret Stafford, Rachel Toth, Christian Cole, Carol MacKintosh, Geoffrey J. Barton:
14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides. Bioinform. 31(14): 2276-2283 (2015) - [j35]Marek Gierlinski, Christian Cole, Pietà Schofield, Nicholas J. Schurch, Alexander Sherstnev, Vijender Singh, Nicola Wrobel, Karim Gharbi, Gordon G. Simpson, Tom Owen-Hughes, Mark L. Blaxter, Geoffrey J. Barton:
Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment. Bioinform. 31(22): 3625-3630 (2015) - [j34]Alexey Drozdetskiy, Christian Cole, James B. Procter, Geoffrey J. Barton:
JPred4: a protein secondary structure prediction server. Nucleic Acids Res. 43(Webserver-Issue): W389-W394 (2015) - 2011
- [j33]Peter V. Troshin, James B. Procter, Geoffrey J. Barton:
Java bioinformatics analysis web services for multiple sequence alignment - JABAWS: MSA. Bioinform. 27(14): 2001-2002 (2011) - [j32]Michelle S. Scott, Peter V. Troshin, Geoffrey J. Barton:
NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins. BMC Bioinform. 12: 317 (2011) - [j31]Ian M. Overton, Shirley Graham, Katherine A. Gould, Jason Hinds, Catherine H. Botting, Sally Shirran, Geoffrey J. Barton, Peter J. Coote:
Global network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus. BMC Syst. Biol. 5: 68 (2011) - 2010
- [j30]Mark D. McDowall, Michelle S. Scott, Geoffrey J. Barton:
Human protein-protein interaction prediction. BMC Bioinform. 11(S-10): P1 (2010)
2000 – 2009
- 2009
- [j29]Andrew M. Waterhouse, James B. Procter, David M. A. Martin, Michele E. Clamp, Geoffrey J. Barton:
Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. Bioinform. 25(9): 1189-1191 (2009) - [j28]David M. A. Martin, Diego Miranda-Saavedra, Geoffrey J. Barton:
Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases. Nucleic Acids Res. 37(Database-Issue): 244-250 (2009) - [j27]Mark D. McDowall, Michelle S. Scott, Geoffrey J. Barton:
PIPs: human protein-protein interaction prediction database. Nucleic Acids Res. 37(Database-Issue): 651-656 (2009) - [j26]Michelle S. Scott, Fabio Avolio, Motoharu Ono, Angus I. Lamond, Geoffrey J. Barton:
Human miRNA Precursors with Box H/ACA snoRNA Features. PLoS Comput. Biol. 5(9) (2009) - 2008
- [j25]Ian M. Overton, Gianandrea Padovani, Mark A. Girolami, Geoffrey J. Barton:
ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction. Bioinform. 24(7): 901-907 (2008) - [j24]Jonathan R. Manning, Emily R. Jefferson, Geoffrey J. Barton:
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction. BMC Bioinform. 9 (2008) - [j23]Thomas P. Walsh, Caleb Webber, Stephen M. J. Searle, Shane S. Sturrock, Geoffrey J. Barton:
SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser. Nucleic Acids Res. 36(Web-Server-Issue): 25-29 (2008) - [j22]Ian M. Overton, C. A. Johannes van Niekerk, Lester G. Carter, Alice Dawson, David M. A. Martin, Scott Cameron, Stephen A. McMahon, Malcolm F. White, William N. Hunter, James H. Naismith, Geoffrey J. Barton:
TarO: a target optimisation system for structural biology. Nucleic Acids Res. 36(Web-Server-Issue): 190-196 (2008) - [j21]Christian Cole, Jonathan D. Barber, Geoffrey J. Barton:
The Jpred 3 secondary structure prediction server. Nucleic Acids Res. 36(Web-Server-Issue): 197-201 (2008) - 2007
- [j20]Michelle S. Scott, Geoffrey J. Barton:
Probabilistic prediction and ranking of human protein-protein interactions. BMC Bioinform. 8 (2007) - [j19]Michelle S. Scott, Geoffrey J. Barton:
Prediction and ranking of human protein-protein interactions within a Bayesian framework. BMC Syst. Biol. 1(S-1): P66 (2007) - [j18]Emily R. Jefferson, Geoffrey J. Barton:
The relationship between domain-domain interaction orientation and sequence similarity. BMC Syst. Biol. 1(S-1): S13 (2007) - [j17]Emily R. Jefferson, Thomas P. Walsh, Timothy J. Roberts, Geoffrey J. Barton:
SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions. Nucleic Acids Res. 35(Database-Issue): 580-589 (2007) - 2006
- [j16]Julie Dawn Thompson, Arnaud Muller, Andrew M. Waterhouse, James B. Procter, Geoffrey J. Barton, Frédéric Plewniak, Olivier Poch:
MACSIMS : multiple alignment of complete sequences information management system. BMC Bioinform. 7: 318 (2006) - [j15]G. P. S. Raghava, Geoffrey J. Barton:
Quantification of the variation in percentage identity for protein sequence alignments. BMC Bioinform. 7: 415 (2006) - 2005
- [j14]Andrew M. Waterhouse, James B. Procter, David M. A. Martin, Geoffrey J. Barton:
Jalview: Visualization and Analysis of Molecular Sequences, Alignments, and Structures. BMC Bioinform. 6(S-3) (2005) - 2004
- [j13]Michele E. Clamp, James A. Cuff, Stephen M. J. Searle, Geoffrey J. Barton:
The Jalview Java alignment editor. Bioinform. 20(3): 426-427 (2004) - [j12]David M. A. Martin, Matthew Berriman, Geoffrey J. Barton:
GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes. BMC Bioinform. 5: 178 (2004) - [j11]Adel Golovin, Thomas J. Oldfield, John G. Tate, Samir S. Velankar, Geoffrey J. Barton, Harry Boutselakis, Dimitris Dimitropoulos, Joël Fillon, A. Hussain, John M. C. Ionides, Melford John, Peter A. Keller, Evgeny B. Krissinel, P. McNeil, Avi Naim, Richard H. Newman, Anne Pajon, Jorge Pineda, Abdel-Krim Rachedi, J. Copeland, Andrey Sitnov, Siamak Sobhany, Antonio Suarez-Uruena, G. J. Swaminathan, Mohammed Tagari, Swen Tromm, Wim F. Vranken, Kim Henrick:
E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res. 32(Database-Issue): 211-216 (2004) - 2003
- [j10]David M. A. Martin, Pamela Hill, Geoffrey J. Barton, Andrew J. Flavell:
Visual Representation of Database Search Results: The RHIMS Plot. Bioinform. 19(8): 1037-1038 (2003) - [j9]Caleb Webber, Geoffrey J. Barton:
Increased Coverage Obtained by Combination of Methods for Protein Sequence Database Searching. Bioinform. 19(11): 1397-1403 (2003) - [j8]G. P. S. Raghava, Stephen M. J. Searle, Patrick C. Audley, Jonathan D. Barber, Geoffrey J. Barton:
OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy. BMC Bioinform. 4: 47 (2003) - 2001
- [j7]Asim S. Siddiqui, Uwe Dengler, Geoffrey J. Barton:
3Dee: a database of protein structural domains. Bioinform. 17(1): 200-201 (2001) - [j6]Caleb Webber, Geoffrey J. Barton:
Estimation of P-values for global alignments of protein sequences. Bioinform. 17(12): 1158-1167 (2001) - 2000
- [j5]James A. Cuff, Ewan Birney, Michele E. Clamp, Geoffrey J. Barton:
ProtEST: protein multiple sequence alignments from expressed sequence tags. Bioinform. 16(2): 111-116 (2000)
1990 – 1999
- 1998
- [j4]James A. Cuff, Michele E. Clamp, Asim S. Siddiqui, M. Finlay, Geoffrey J. Barton:
JPred: a consensus secondary structure prediction server. Bioinform. 14(10): 892-893 (1998) - 1995
- [c1]Robert B. Russell, R. R. Copley, Geoffrey J. Barton:
Protein fold recognition from secondary structure assignments. HICSS (5) 1995: 302-311 - 1993
- [j3]Geoffrey J. Barton:
An efficient algorithm to locate all locally optimal alignments between two sequences allowing for gaps. Comput. Appl. Biosci. 9(6): 729-734 (1993) - [j2]C. D. Livingstone, Geoffrey J. Barton:
Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation. Comput. Appl. Biosci. 9(6): 745-756 (1993) - 1991
- [j1]Geoffrey J. Barton:
Scanning protein sequence databanks using a distributed processing workstation network. Comput. Appl. Biosci. 7(1): 85-88 (1991)
Coauthor Index
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