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2020 – today
- 2023
[j19]Marcela Uliano-Silva
, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Mark L. Blaxter, Nova Mieszkowska, Neil Hall, Peter Holland, Richard Durbin, Thomas Richards, Paul J. Kersey, Peter Hollingsworth, Willie Wilson, Alex Twyford, Ester Gaya, Mara Lawniczak, Owen Lewis, Gavin Broad, Fergal Martin, Michelle Hart, Ian Barnes, Giulio Formenti, Linelle Abueg, James W. Torrance, Eugene W. Myers, Shane A. McCarthy:
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. BMC Bioinform. 24(1): 288 (2023)
2010 – 2019
- 2017
- [j18]Richard J. Challis, Sujai Kumar, Lewis Stevens, Mark L. Blaxter:
GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species. Database J. Biol. Databases Curation 2017: bax039 (2017) - [i1]Dominik R. Laetsch, Mark L. Blaxter:
BlobTools: Interrogation of genome assemblies. F1000Research 6: 1287- (2017) - 2015
- [j17]Mick Watson, Marian Thomson, Judith E. Risse, Richard Talbot, Javier Santoyo-Lopez, Karim Gharbi, Mark L. Blaxter:
poRe: an R package for the visualization and analysis of nanopore sequencing data. Bioinform. 31(1): 114-115 (2015) - [j16]Marek Gierlinski, Christian Cole, Pietà Schofield, Nicholas J. Schurch, Alexander Sherstnev, Vijender Singh, Nicola Wrobel, Karim Gharbi, Gordon G. Simpson, Tom Owen-Hughes, Mark L. Blaxter, Geoffrey J. Barton:
Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment. Bioinform. 31(22): 3625-3630 (2015) - [j15]Amir Szitenberg, Max John, Mark L. Blaxter, David H. Lunt:
ReproPhylo: An Environment for Reproducible Phylogenomics. PLoS Comput. Biol. 11(9) (2015) - 2013
- [j14]Ben Elsworth, Martin O. Jones, Mark L. Blaxter:
Badger - an accessible genome exploration environment. Bioinform. 29(21): 2788-2789 (2013) - [j13]Martin O. Jones, Mark L. Blaxter:
afterParty: turning raw transcriptomes into permanent resources. BMC Bioinform. 14: 301 (2013) - 2012
- [j12]Sujai Kumar, Philipp H. Schiffer, Mark L. Blaxter:
959 Nematode Genomes: a semantic wiki for coordinating sequencing projects. Nucleic Acids Res. 40(Database-Issue): 1295-1300 (2012) - 2011
- [j11]Martin O. Jones, Georgios D. Koutsovoulos, Mark L. Blaxter:
iPhy: an integrated phylogenetic workbench for supermatrix analyses. BMC Bioinform. 12: 30 (2011) - 2010
- [j10]Suresh Swain, Jodie F. Wren, Stephen R. Stürzenbaum, Peter Kille, A. John Morgan, Tjalling Jager, Martijs J. Jonker, Peter K. Hankard, Claus Svendsen, Jenifer Owen, Ann Hedley, Mark L. Blaxter, David J. Spurgeon:
Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans. BMC Syst. Biol. 4: 32 (2010)
2000 – 2009
- 2008
- [j9]Ralf Schmid, Mark L. Blaxter:
annot8r: GO, EC and KEGG annotation of EST datasets. BMC Bioinform. 9 (2008) - [j8]Alexie Papanicolaou, Steffi Gebauer-Jung, Mark L. Blaxter, W. Owen McMillan, Chris D. Jiggins:
ButterflyBase: a platform for lepidopteran genomics. Nucleic Acids Res. 36(Database-Issue): 582-587 (2008) - 2006
- [j7]Martin O. Jones, Mark L. Blaxter:
TaxMan: a taxonomic database manager. BMC Bioinform. 7: 536 (2006) - 2005
- [j6]James Wasmuth, Ralf Schmid, Alasdair Anthony, John Parkinson, Mark L. Blaxter:
Exploring Parasite Gene Space. BMC Bioinform. 6(S-3) (2005) - 2004
- [j5]John Parkinson, Alasdair Anthony, James Wasmuth, Ralf Schmid, Ann Hedley, Mark L. Blaxter:
PartiGene-constructing partial genomes. Bioinform. 20(9): 1398-1404 (2004) - [j4]James Wasmuth, Mark L. Blaxter:
prot4EST: Translating Expressed Sequence Tags from neglected genomes. BMC Bioinform. 5: 187 (2004) - [j3]John Parkinson, Claire Whitton, Ralf Schmid, Marian Thomson, Mark L. Blaxter:
NEMBASE: a resource for parasitic nematode ESTs. Nucleic Acids Res. 32(Database-Issue): 427-430 (2004) - 2003
- [j2]John Parkinson, Mark L. Blaxter:
SimiTri-visualizing similarity relationships for groups of sequences. Bioinform. 19(3): 390-395 (2003) - 2002
- [j1]John Parkinson, David B. Guiliano, Mark L. Blaxter:
Making sense of EST sequences by CLOBBing them. BMC Bioinform. 3: 31 (2002)
Coauthor Index
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