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ORCIDSergio Baranzini
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2020 – today
- 2023
[j9]John H. Morris, Karthik Soman
, Rabia E. Akbas, Xiaoyuan Zhou, Brett Smith, Elaine C. Meng, Conrad C. Huang, Gabriel Cerono, Gundolf Schenk, Angela Rizk-Jackson, Adil Harroud, Lauren M. Sanders, Sylvain V. Costes, Krish Bharat, Arjun Chakraborty, Alexander R. Pico, Taline Mardirossian, Michael J. Keiser, Alice Tang, Josef Hardi, Yongmei Shi, Mark A. Musen, Sharat Israni, Sui Huang, Peter W. Rose, Charlotte A. Nelson, Sergio E. Baranzini:
The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information. Bioinform. 39(2) (2023)- [j8]Ryan T. Scott, Lauren M. Sanders, Erik L. Antonsen, Jaden J. A. Hastings, Seung-Min Park, Graham Mackintosh, Robert J. Reynolds, Adrienne L. Hoarfrost, Aenor Sawyer, Casey S. Greene, Benjamin S. Glicksberg, Corey A. Theriot, Daniel C. Berrios, Jack Miller, Joel Babdor, Richard Barker, Sergio E. Baranzini, Afshin Beheshti, Stuart J. Chalk, Guillermo M. Delgado-Aparicio, Melissa A. Haendel, Arif A. Hamid, Philip Heller, Daniel Jamieson, Katelyn J. Jarvis, John Kalantari, Kia Khezeli, Svetlana V. Komarova, Matthieu Komorowski, Prachi Kothiyal, Ashish Mahabal, Uri Manor, Héctor García Martín, Christopher E. Mason, Mona Matar, George I. Mias, Jerry G. Myers Jr., Charlotte A. Nelson, Jonathan Oribello, Patricia Parsons-Wingerter, R. K. Prabhu, Amina Ann Qutub, Jon Rask, Amanda Saravia-Butler, Suchi Saria, Nitin Kumar Singh, Michael Snyder, Frank Soboczenski, Karthik Soman, David Van Valen, Kasthuri Venkateswaran, Liz Warren, Liz Worthey, Jason H. Yang, Marinka Zitnik, Sylvain V. Costes:
Biomonitoring and precision health in deep space supported by artificial intelligence. Nat. Mac. Intell. 5(3): 196-207 (2023) - [j7]Lauren M. Sanders, Ryan T. Scott, Jason H. Yang, Amina Ann Qutub, Héctor García Martín, Daniel C. Berrios, Jaden J. A. Hastings, Jon Rask, Graham Mackintosh, Adrienne L. Hoarfrost, Stuart J. Chalk, John Kalantari, Kia Khezeli, Erik L. Antonsen, Joel Babdor, Richard Barker, Sergio E. Baranzini, Afshin Beheshti, Guillermo M. Delgado-Aparicio, Benjamin S. Glicksberg, Casey S. Greene, Melissa A. Haendel, Arif A. Hamid, Philip Heller, Daniel Jamieson, Katelyn J. Jarvis, Svetlana V. Komarova, Matthieu Komorowski, Prachi Kothiyal, Ashish Mahabal, Uri Manor, Christopher E. Mason, Mona Matar, George I. Mias, Jack Miller, Jerry G. Myers Jr., Charlotte A. Nelson, Jonathan Oribello, Seung-Min Park, Patricia Parsons-Wingerter, R. K. Prabhu, Robert J. Reynolds, Amanda Saravia-Butler, Suchi Saria, Aenor Sawyer, Nitin Kumar Singh, Michael Snyder, Frank Soboczenski, Karthik Soman, Corey A. Theriot, David Van Valen, Kasthuri Venkateswaran, Liz Warren, Liz Worthey, Marinka Zitnik, Sylvain V. Costes:
Biological research and self-driving labs in deep space supported by artificial intelligence. Nat. Mac. Intell. 5(3): 208-219 (2023) - [i4]Karthik Soman, Peter W. Rose, John H. Morris, Rabia E. Akbas, Brett Smith, Braian Peetoom, Catalina Villouta-Reyes, Gabriel Cerono, Yongmei Shi, Angela Rizk-Jackson, Sharat Israni, Charlotte A. Nelson, Sui Huang, Sergio E. Baranzini:
Biomedical knowledge graph-enhanced prompt generation for large language models. CoRR abs/2311.17330 (2023) - 2022
- [j6]Sergio E. Baranzini, Katy Börner, John H. Morris, Charlotte A. Nelson, Karthik Soman, Erica Schleimer, Michael J. Keiser, Mark A. Musen, Roger Pearce, Tahsin Reza, Brett Smith, Bruce William Herr II, Boris Oskotsky, Angela Rizk-Jackson, Katherine P. Rankin, Stephan J. Sanders, Riley Bove, Peter W. Rose, Sharat Israni, Sui Huang:
A Biomedical Open Knowledge Network Harnesses the Power of AI to Understand Deep Human Biology. AI Mag. 43(1): 46-58 (2022) - [j5]Charlotte A. Nelson, Riley Bove, Atul J. Butte, Sergio E. Baranzini:
Embedding electronic health records onto a knowledge network recognizes prodromal features of multiple sclerosis and predicts diagnosis. J. Am. Medical Informatics Assoc. 29(3): 424-434 (2022) - [c8]Ying Ding, Amit P. Sheth, Krzysztof W. Janowicz, Sergio Baranzini, Sharat Israni, Ilkay Altintas, Lilit Yeghiazarian, Ellie Young, Sam Klein:
International Workshop on Knowledge Graphs: Open Knowledge Network. KDD 2022: 4864-4865 - [c7]Ramakrishnan Kannan, Piyush Sao, Hao Lu, Jakub Kurzak, Gundolf Schenk, Yongmei Shi, Seung-Hwan Lim, Sharat Israni, Vijay Thakkar, Guojing Cong, Robert M. Patton, Sergio E. Baranzini, Richard W. Vuduc, Thomas E. Potok:
Exaflops Biomedical Knowledge Graph Analytics. SC 2022: 6:1-6:11 - 2021
- [i3]Ryan T. Scott, Erik L. Antonsen, Lauren M. Sanders, Jaden J. A. Hastings, Seung-Min Park, Graham Mackintosh, Robert J. Reynolds, Adrienne L. Hoarfrost, Aenor Sawyer, Casey S. Greene, Benjamin S. Glicksberg, Corey A. Theriot, Daniel C. Berrios, Jack Miller, Joel Babdor, Richard Barker, Sergio E. Baranzini, Afshin Beheshti, Stuart J. Chalk, Guillermo M. Delgado-Aparicio, Melissa A. Haendel, Arif A. Hamid, Philip Heller, Daniel Jamieson, Katelyn J. Jarvis, John Kalantari, Kia Khezeli, Svetlana V. Komarova, Matthieu Komorowski, Prachi Kothiyal, Ashish Mahabal, Uri Manor, Héctor García Martín, Christopher E. Mason, Mona Matar, George I. Mias, Jerry G. Myers Jr., Charlotte A. Nelson, Jonathan Oribello, Patricia Parsons-Wingerter, R. K. Prabhu, Amina Ann Qutub, Jon Rask, Amanda Saravia-Butler, Suchi Saria, Nitin Kumar Singh, Frank Soboczenski, Michael Snyder, Karthik Soman, David Van Valen, Kasthuri Venkateswaran, Liz Warren, Liz Worthey, Jason H. Yang, Marinka Zitnik, Sylvain V. Costes:
Beyond Low Earth Orbit: Biomonitoring, Artificial Intelligence, and Precision Space Health. CoRR abs/2112.12554 (2021) - [i2]Lauren M. Sanders, Jason H. Yang, Ryan T. Scott, Amina Ann Qutub, Héctor García Martín, Daniel C. Berrios, Jaden J. A. Hastings, Jon Rask, Graham Mackintosh, Adrienne L. Hoarfrost, Stuart J. Chalk, John Kalantari, Kia Khezeli, Erik L. Antonsen, Joel Babdor, Richard Barker, Sergio E. Baranzini, Afshin Beheshti, Guillermo M. Delgado-Aparicio, Benjamin S. Glicksberg, Casey S. Greene, Melissa A. Haendel, Arif A. Hamid, Philip Heller, Daniel Jamieson, Katelyn J. Jarvis, Svetlana V. Komarova, Matthieu Komorowski, Prachi Kothiyal, Ashish Mahabal, Uri Manor, Christopher E. Mason, Mona Matar, George I. Mias, Jack Miller, Jerry G. Myers Jr., Charlotte A. Nelson, Jonathan Oribello, Seung-Min Park, Patricia Parsons-Wingerter, R. K. Prabhu, Robert J. Reynolds, Amanda Saravia-Butler, Suchi Saria, Aenor Sawyer, Nitin Kumar Singh, Frank Soboczenski, Michael Snyder, Karthik Soman, Corey A. Theriot, David Van Valen, Kasthuri Venkateswaran, Liz Warren, Liz Worthey, Marinka Zitnik, Sylvain V. Costes:
Beyond Low Earth Orbit: Biological Research, Artificial Intelligence, and Self-Driving Labs. CoRR abs/2112.12582 (2021)
2010 – 2019
- 2015
- [j4]Lili Wang, Takuya Matsushita, Lohith Madireddy, Parvin Mousavi, Sergio Baranzini:
PINBPA: Cytoscape app for network analysis of GWAS data. Bioinform. 31(2): 262-264 (2015) - [j3]Daniel S. Himmelstein, Sergio E. Baranzini:
Heterogeneous Network Edge Prediction: A Data Integration Approach to Prioritize Disease-Associated Genes. PLoS Comput. Biol. 11(7) (2015) - [c6]Lili Wang, Parvin Mousavi, Sergio Baranzini:
iPINBPA: An Integrative Network-Based Functional Module Discovery Tool for Genome-Wide Association Studies. Pacific Symposium on Biocomputing 2015: 255-266 - [i1]Lili Wang, Daniel S. Himmelstein, Adam Santaniello, Parvin Mousavi, Sergio E. Baranzini:
iCTNet2: integrating heterogeneous biological interactions to understand complex traits. F1000Research 4: 485 (2015) - 2012
- [j2]Shu-Yi Su, Jay Kasberger, Sergio Baranzini, William Byerley, Wilson Liao, Jorge Oksenberg, Elliott Sherr, Eric Jorgenson:
Detection of identity by descent using next-generation whole genome sequencing data. BMC Bioinform. 13: 121 (2012) - 2011
- [j1]Lili Wang, Pouya Khankhanian, Sergio Baranzini, Parvin Mousavi:
iCTNet: A Cytoscape plugin to produce and analyze integrative complex traits networks. BMC Bioinform. 12: 380 (2011) - [c5]Marco Sorani, Geoffrey T. Manley, J. Claude Hemphill, Sergio Baranzini:
Dynamic, Multi-Level Network Models of Clinical Trials. Pacific Symposium on Biocomputing 2011: 38-49
2000 – 2009
- 2006
- [c4]Simon Knott, Parvin Mousavi, Sergio Baranzini:
A Systematic Approach for Identifying Regulatory Interactions in Large Temporal Gene Expression Datasets from Peripheral Blood. CIBCB 2006: 1-8 - [c3]Simon Knott, Parvin Mousavi, Sergio Baranzini:
A Systematic Approach for Identifying Regulatory Interactions in Large Temporal Gene Expression Datasets from Peripheral Blood. CIBCB 2006: 1-8 - [c2]Sara Mostafavi, Sergio Baranzini, Jorge Oksenberg, Parvin Mousavi:
A Fast Multivariate Feature-Selection/Classification Approach for Prediction of Therapy Response in Multiple Sclerosis. CIBCB 2006: 1-8 - [c1]Sara Mostafavi, Sergio Baranzini, Jorge Oksernberg, Parvin Mousavi:
Predictive modeling of therapy response in multiple sclerosis using gene expression data. EMBC 2006: 5519-5522
Coauthor Index
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