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Vladimir N. Uversky
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2020 – today
- 2024
- [j26]Sk. Sarif Hassan, Tanishta Bhattacharya, Debaleena Nawn, Ishana Jha, Pallab Basu, Elrashdy M. Redwan, Kenneth Lundstrom, Debmalya Barh, Bruno Silva Andrade, Murtaza M. Tambuwala, Alaa A. A. Aljabali, Altijana Hromic-Jahjefendic, Wagner Baetas-da-Cruz, Ángel Serrano-Aroca, Vladimir N. Uversky:
SARS-CoV-2 NSP14 governs mutational instability and assists in making new SARS-CoV-2 variants. Comput. Biol. Medicine 170: 107899 (2024) - 2023
- [j25]Zhihua Du, Tianyou Huang, Vladimir N. Uversky, Jianqiang Li:
Predicting TF Proteins by Incorporating Evolution Information Through PSSM. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1319-1326 (2023) - [c9]Zhihua Du, Tianyou Huang, Jian-Qiang Li, Vladimir N. Uversky:
TFBSnet: A deep learning-based tool for predicting transcription factor binding site from DNA sequences. BIBM 2023: 494-499 - 2022
- [j24]Zhihua Du, Xing Zhong, Fangzhong Wang, Vladimir N. Uversky:
Inference of gene regulatory networks based on the Light Gradient Boosting Machine. Comput. Biol. Chem. 101: 107769 (2022) - [j23]Fatemeh Bayani, Negin Safaei Hashkavaei, Vladimir N. Uversky, Sina Mozaffari-Jovin, Yahya Sefidbakht:
Insights into the structural peculiarities of the N-terminal and receptor binding domains of the spike protein from the SARS-CoV-2 Omicron variant. Comput. Biol. Medicine 147: 105735 (2022) - [j22]Min Fang, Yufeng He, Zhihua Du, Vladimir N. Uversky:
DeepCLD: An Efficient Sequence-Based Predictor of Intrinsically Disordered Proteins. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3154-3159 (2022) - 2021
- [j21]Naveen Kumar, Rahul Kaushik, Chandana Tennakoon, Vladimir N. Uversky, Sonia Longhi, Kam Y. J. Zhang, Sandeep Bhatia:
Insights into the evolutionary forces that shape the codon usage in the viral genome segments encoding intrinsically disordered protein regions. Briefings Bioinform. 22(5) (2021) - [j20]Sagnik Sen, Ashmita Dey, Sanghamitra Bandhyopadhyay, Vladimir N. Uversky, Ujjwal Maulik:
Understanding structural malleability of the SARS-CoV-2 proteins and relation to the comorbidities. Briefings Bioinform. 22(6) (2021) - [j19]Sarif Sk. Hassan, Alaa A. A. Aljabali, Pritam Kumar Panda, Shinjini Ghosh, Diksha Attrish, Pabitra Pal Choudhury, Murat Seyran, Damiano Pizzol, Parise Adadi, Tarek Mohamed Abd El-Aziz, Antonio Soares, Ramesh Kandimalla, Kenneth Lundstrom, Amos Lal, Gajendra Kumar Azad, Vladimir N. Uversky, Samendra Sherchan, Wagner Baetas-da-Cruz, Bruce D. Uhal, Nima Rezaei, Gaurav Chauhan, Debmalya Barh, Elrashdy M. Redwan, Guy W. Dayhoff II, Nicolas G. Bazan, Ángel Serrano-Aroca, Amr El-Demerdash, Yogendra Kumar Mishra, Giorgio Palù, Kazuo Takayama, Adam M. Brufsky, Murtaza M. Tambuwala:
A unique view of SARS-CoV-2 through the lens of ORF8 protein. Comput. Biol. Medicine 133: 104380 (2021) - [c8]Gerard Kian-Meng Goh, A. Keith Dunker, James A. Foster, Vladimir N. Uversky:
Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysis. PSB 2021 - 2020
- [j18]Zhihua Du, Yufeng He, Jianqiang Li, Vladimir N. Uversky:
DeepAdd: Protein function prediction from k-mer embedding and additional features. Comput. Biol. Chem. 89: 107379 (2020) - [c7]Wei-Lun Alterovitz, Eshel Faraggi, Christopher J. Oldfield, Jingwei Meng, Bin Xue, Fei Huang, Pedro Romero, Andrzej Kloczkowski, Vladimir N. Uversky, A. Keith Dunker:
Many-to-One Binding by Intrinsically Disordered Protein Regions. PSB 2020: 159-170
2010 – 2019
- 2019
- [j17]Orkid Coskuner-Weber, Vladimir N. Uversky:
Alanine Scanning Effects on the Biochemical and Biophysical Properties of Intrinsically Disordered Proteins: A Case Study of the Histidine to Alanine Mutations in Amyloid-β42. J. Chem. Inf. Model. 59(2): 871-884 (2019) - 2017
- [j16]Orkid Coskuner, Vladimir N. Uversky:
Tyrosine Regulates β-Sheet Structure Formation in Amyloid-β42: A New Clustering Algorithm for Disordered Proteins. J. Chem. Inf. Model. 57(6): 1342-1358 (2017) - [j15]Damiano Piovesan, Francesco Tabaro, Ivan Micetic, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmár, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Éva Schád, Antoine Schramm, Beáta Szabó, Ágnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, Silvio C. E. Tosatto:
DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Res. 45(Database-Issue): D219-D227 (2017) - 2015
- [j14]Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker:
Erratum to: Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. 16: 241:1-241:2 (2015) - 2014
- [j13]Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker:
Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. 15(S-17): S4 (2014) - [j12]Mihaly Varadi, Simone Kosol, Pierre Lebrun, Erica Valentini, Martin Blackledge, A. Keith Dunker, Isabella C. Felli, Julie D. Forman-Kay, Richard W. Kriwacki, Roberta Pierattelli, Joel L. Sussman, Dmitri I. Svergun, Vladimir N. Uversky, Michele Vendruscolo, David S. Wishart, Peter E. Wright, Peter Tompa:
pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins. Nucleic Acids Res. 42(Database-Issue): 326-335 (2014) - 2013
- [j11]Matt E. Oates, Pedro Romero, Takashi Ishida, Mohamed F. Ghalwash, Marcin J. Mizianty, Bin Xue, Zsuzsanna Dosztányi, Vladimir N. Uversky, Zoran Obradovic, Lukasz A. Kurgan, A. Keith Dunker, Julian Gough:
D2P2: database of disordered protein predictions. Nucleic Acids Res. 41(Database-Issue): 508-516 (2013) - 2012
- [j10]Fatemeh Miri Disfani, Wei-Lun Hsu, Marcin J. Mizianty, Christopher J. Oldfield, Bin Xue, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan:
MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins. Bioinform. 28(12): 75-83 (2012) - [j9]Vladimir Vacic, Phineus R. L. Markwick, Christopher J. Oldfield, Xiaoyue Zhao, Chad Haynes, Vladimir N. Uversky, Lilia M. Iakoucheva:
Disease-Associated Mutations Disrupt Functionally Important Regions of Intrinsic Protein Disorder. PLoS Comput. Biol. 8(10) (2012) - [c6]Wei-Lun Hsu, Christopher J. Oldfield, Jingwei Meng, Fei Huang, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker:
Intrinsic Protein Disorder and Protein-Protein Interactions. Pacific Symposium on Biocomputing 2012: 116-127 - [c5]Fei Huang, Christopher J. Oldfield, Jingwei Meng, Wei-Lun Hsu, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker:
Subclassifying Disordered Proteins by the CH-CDF Plot Method. Pacific Symposium on Biocomputing 2012: 128-139 - 2011
- [j8]Marcin J. Mizianty, Tuo Zhang, Bin Xue, Yaoqi Zhou, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan:
In-silico prediction of disorder content using hybrid sequence representation. BMC Bioinform. 12: 245 (2011) - 2010
- [j7]Bin Xue, Robert W. Williams, Christopher J. Oldfield, A. Keith Dunker, Vladimir N. Uversky:
Archaic chaos: intrinsically disordered proteins in Archaea. BMC Syst. Biol. 4(S-1): S1 (2010)
2000 – 2009
- 2009
- [j6]Amrita Mohan, Vladimir N. Uversky, Predrag Radivojac:
Influence of Sequence Changes and Environment on Intrinsically Disordered Proteins. PLoS Comput. Biol. 5(9) (2009) - 2008
- [j5]Ágnes Tóth-Petróczy, Christopher J. Oldfield, István Simon, Yuichiro Takagi, A. Keith Dunker, Vladimir N. Uversky, Mónika Fuxreiter:
Malleable Machines in Transcription Regulation: The Mediator Complex. PLoS Comput. Biol. 4(12) (2008) - 2007
- [j4]Vladimir Vacic, Vladimir N. Uversky, A. Keith Dunker, Stefano Lonardi:
Composition Profiler: a tool for discovery and visualization of amino acid composition differences. BMC Bioinform. 8 (2007) - [j3]Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, Vladimir Vacic, Marc S. Cortese, Ágnes Tantos, Beáta Szabó, Peter Tompa, Jake Yue Chen, Vladimir N. Uversky, Zoran Obradovic, A. Keith Dunker:
DisProt: the Database of Disordered Proteins. Nucleic Acids Res. 35(Database-Issue): 786-793 (2007) - [c4]A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky:
Intrinsically Disordered Proteins: Predictions and Applications. BIBE 2007: 1 - [c3]Vladimir N. Uversky, Christopher J. Oldfield, A. Keith Dunker:
Intrinsically Disordered Proteins in Human Diseases. BIBE 2007: 12 - [c2]A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky:
Intrinsically Disordered Proteins: An Update. BIBE 2007: 49-58 - [c1]Christopher J. Oldfield, Jingwei Meng, Jack Y. Yang, Vladimir N. Uversky, A. Keith Dunker:
Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3. BIOCOMP 2007: 553-566 - 2006
- [j2]Chad Haynes, Christopher J. Oldfield, Fei Ji, Niels Klitgord, Michael E. Cusick, Predrag Radivojac, Vladimir N. Uversky, Marc Vidal, Lilia M. Iakoucheva:
Intrinsic Disorder Is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes. PLoS Comput. Biol. 2(8) (2006) - 2005
- [j1]Mauro Colafranceschi, Alfredo Colosimo, Joseph P. Zbilut, Vladimir N. Uversky, Alessandro Giuliani:
Structure-Related Statistical Singularities along Protein Sequences: A Correlation Study. J. Chem. Inf. Model. 45(1): 183-189 (2005)
Coauthor Index
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last updated on 2024-08-05 21:21 CEST by the dblp team
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