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2020 – today
- 2022
[j10]Junyan Song, Pei Fen Kuan
:
A systematic assessment of cell type deconvolution algorithms for DNA methylation data. Briefings Bioinform. 23(6) (2022)- [j9]Kaiqiao Li, Sijie Yao, Zhenyu Zhang, Biwei Cao, Christopher M. Wilson, Denise Kalos, Pei Fen Kuan, Ruoqing Zhu, Xuefeng Wang:
Efficient gradient boosting for prognostic biomarker discovery. Bioinform. 38(6): 1631-1638 (2022) - 2021
- [j8]Christopher M. Wilson, Kaiqiao Li, Qiang Sun, Pei Fen Kuan, Xuefeng Wang:
Fenchel duality of Cox partial likelihood with an application in survival kernel learning. Artif. Intell. Medicine 116: 102077 (2021) - 2020
- [j7]Xu Ren, Pei Fen Kuan:
Negative binomial additive model for RNA-Seq data analysis. BMC Bioinform. 21(1): 171 (2020)
2010 – 2019
- 2019
- [j6]Xu Ren, Pei Fen Kuan:
methylGSA: a Bioconductor package and Shiny app for DNA methylation data length bias adjustment in gene set testing. Bioinform. 35(11): 1958-1959 (2019) - [j5]Christopher M. Wilson, Kaiqiao Li, Xiaoqing Yu, Pei Fen Kuan, Xuefeng Wang:
Multiple-kernel learning for genomic data mining and prediction. BMC Bioinform. 20(1): 426:1-426:7 (2019) - 2017
- [j4]Pei Fen Kuan, R. Scott Powers, Shuyao He, Kaiqiao Li, Xiaoyu Zhao, Bo Huang:
A systematic evaluation of nucleotide properties for CRISPR sgRNA design. BMC Bioinform. 18(1): 297 (2017) - [c2]Pei Fen Kuan, Junyan Song, Shuyao He:
methylDMV: Simultaneous Detection of Differential DNA Methylation and Variability with Confounder Adjustment. PSB 2017: 461-472 - 2011
- [j3]Dongjun Chung, Pei Fen Kuan, Bo Li, Rajendran Sanalkumar, Kun Liang, Emery H. Bresnick, Colin N. Dewey, Sündüz Keles:
Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data. PLoS Comput. Biol. 7(7) (2011) - 2010
- [j2]Pei Fen Kuan, Sijian Wang, Xin Zhou, Haitao Chu:
A statistical framework for Illumina DNA methylation arrays. Bioinform. 26(22): 2849-2855 (2010) - [j1]Benedikt Zacher, Pei Fen Kuan, Achim Tresch:
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data. BMC Bioinform. 11: 194 (2010)
2000 – 2009
- 2008
- [c1]Pei Fen Kuan, Hyonho Chun, Sündüz Keles:
CMARRT: A Tool of Analysis of CHIP-chip Data from Tiling Arrays by Incorporating the Correlation Structure. Pacific Symposium on Biocomputing 2008: 515-526
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