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ORCIDEvan Bolton
Evan E. Bolton
Person information
- affiliation: National Library of Medicine (NLM), National Center for Biotechnology Information (NCBI)
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2020 – today
- 2024
[j48]Karina Martinez
, Jon Agirre, Yukie Akune, Kiyoko F. Aoki-Kinoshita, Cecilia N. Arighi, Kristian B. Axelsen, Evan Bolton, Emily Bordeleau, Nathan J. Edwards, Elisa Fadda, Ten Feizi, Catherine A. Hayes, Callum M. Ives, Hiren J. Joshi, Khakurel Krishna Prasad, Sofia Kossida, Frédérique Lisacek, Yan Liu, Thomas Lütteke, Junfeng Ma, Adnan Malik, Maria Jesus Martin, Akul Y. Mehta, Sriram Neelamegham, Kalpana Panneerselvam, René Ranzinger, Sylvie Ricard-Blum, Gaoussou Sanou, Vijay Shanker, Paul D. Thomas, Michael Tiemeyer, James Urban, Randi Vita, Jeet Vora, Yasunori Yamamoto, Raja Mazumder:
Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy. Database J. Biol. Databases Curation 2024 (2024)- [j47]Sunghwan Kim, Bo Yu, Qingliang Li, Evan E. Bolton:
PubChem synonym filtering process using crowdsourcing. J. Cheminformatics 16(1): 69 (2024) - 2023
- [j46]Antanas Vaitkus, Andrius Merkys, Thomas Sander, Miguel Quirós, Paul A. Thiessen, Evan E. Bolton, Saulius Grazulis:
A workflow for deriving chemical entities from crystallographic data and its application to the Crystallography Open Database. J. Cheminformatics 15(1): 123 (2023) - [j45]Eric W. Sayers, Evan E. Bolton, J. Rodney Brister, Kathi Canese, Jessica Chan, Donald C. Comeau, Catherine M. Farrell, Michael Feldgarden, Anna M. Fine, Kathryn Funk, Eneida Hatcher, Sivakumar Kannan, Christopher Kelly, Sunghwan Kim, William Klimke, Melissa J. Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Adriana J. Malheiro, Aron Marchler-Bauer, Terence D. Murphy, Lon Phan, Shashikant Pujar, Sanjida H. Rangwala, Valerie A. Schneider, Tony Tse, Jiyao Wang, Jian Ye, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry:
Database resources of the National Center for Biotechnology Information in 2023. Nucleic Acids Res. 51(D1): 29-38 (2023) - [j44]Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan E. Bolton:
PubChem 2023 update. Nucleic Acids Res. 51(D1): 1373-1380 (2023) - [c4]Qingliang Li, Sunghwan Kim, Leonid Zaslavsky, Tiejun Cheng, Bo Yu, Evan E. Bolton:
Resource Description Framework (RDF) Modeling of Named Entity Co-occurrences Derived from Biomedical Literature in the PubChemRDF. SWAT4HCLS 2023: 32-41 - 2022
- [j43]Andrea Jacobs, Dustin Williams, Katherine Hickey, Nathan Patrick, Antony J. Williams, Stuart J. Chalk, Leah McEwen, Egon L. Willighagen, Martin Walker, Evan Bolton, Gabriel Sinclair, Adam Sanford:
CAS Common Chemistry in 2021: Expanding Access to Trusted Chemical Information for the Scientific Community. J. Chem. Inf. Model. 62(11): 2737-2743 (2022) - [j42]Eric W. Sayers, Evan E. Bolton, J. Rodney Brister, Kathi Canese, Jessica Chan, Donald C. Comeau, Ryan Connor, Kathryn Funk, Chris Kelly, Sunghwan Kim, Tom Madej, Aron Marchler-Bauer, Christopher J. Lanczycki, Stacy Lathrop, Zhiyong Lu, Françoise Thibaud-Nissen, Terence D. Murphy, Lon Phan, Yuri Skripchenko, Tony Tse, Jiyao Wang, Rebecca Williams, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry:
Database resources of the national center for biotechnology information. Nucleic Acids Res. 50(D1): 20-26 (2022) - 2021
- [j41]Leonid Zaslavsky, Tiejun Cheng, Asta Gindulyte, Siqian He, Sunghwan Kim, Qingliang Li, Paul A. Thiessen, Bo Yu, Evan Bolton:
Discovering and Summarizing Relationships Between Chemicals, Genes, Proteins, and Diseases in PubChem. Frontiers Res. Metrics Anal. 6: 689059 (2021) - [j40]Emma Schymanski, Todor Kondic, Steffen Neumann, Paul A. Thiessen, Jian Zhang, Evan Bolton:
Empowering large chemical knowledge bases for exposomics: PubChemLite meets MetFrag. J. Cheminformatics 13(1): 19 (2021) - [j39]Jonathan M. Goodman, Igor V. Pletnev, Paul A. Thiessen, Evan Bolton, Stephen R. Heller:
InChI version 1.06: now more than 99.99% reliable. J. Cheminformatics 13(1): 40 (2021) - [j38]Emma Schymanski, Evan Bolton:
FAIR chemical structures in the Journal of Cheminformatics. J. Cheminformatics 13(1): 50 (2021) - [j37]Eric W. Sayers, Jeffrey Beck, Evan Bolton, Devon Bourexis, James R. Brister, Kathi Canese, Donald C. Comeau, Kathryn Funk, Sunghwan Kim, William Klimke, Aron Marchler-Bauer, Melissa J. Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Nuala A. O'Leary, Lon Phan, Sanjida H. Rangwala, Valerie A. Schneider, Yuri Skripchenko, Jiyao Wang, Jian Ye, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 49(Database-Issue): D10-D17 (2021) - [j36]Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton:
PubChem in 2021: new data content and improved web interfaces. Nucleic Acids Res. 49(Database-Issue): D1388-D1395 (2021) - 2020
- [j35]Sushma Naithani, Parul Gupta, Justin Preece, Peter D'Eustachio, Justin Elser, Priyanka Garg, Daemon A. Dikeman, Jason Kiff, Justin Cook, Andrew Olson, Sharon Wei, Marcela K. Tello-Ruiz, Antonio Fabregat Mundo, Alfonso Muñoz-Pomer Fuentes, Suhaib Mohammed, Tiejun Cheng, Evan Bolton, Irene Papatheodorou, Lincoln Stein, Doreen Ware, Pankaj Jaiswal:
Plant Reactome: a knowledgebase and resource for comparative pathway analysis. Nucleic Acids Res. 48(Database-Issue): D1093-D1103 (2020) - [j34]Eric W. Sayers, Jeffrey Beck, J. Rodney Brister, Evan Bolton, Kathi Canese, Donald C. Comeau, Kathryn Funk, Anne Ketter, Sunghwan Kim, Avi Kimchi, Paul A. Kitts, Anatoliy Kuznetsov, Stacy Lathrop, Zhiyong Lu, Kelly M. McGarvey, Thomas L. Madden, Terence D. Murphy, Nuala A. O'Leary, Lon Phan, Valerie A. Schneider, Françoise Thibaud-Nissen, Barton W. Trawick, Kim D. Pruitt, James Ostell:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 48(Database-Issue): D9-D16 (2020) - [j33]Leyla J. García, Erick Antezana, Alexander García Castro, Evan Bolton, Rafael C. Jiménez, Pjotr Prins, Juan M. Banda, Toshiaki Katayama:
Ten simple rules to run a successful BioHackathon. PLoS Comput. Biol. 16(5) (2020) - [c3]Asiyah Yu Lin, Stephan Gebel, Qingliang Leon Li, Sumit Madan, Johannes Darms, Evan Bolton, Barry Smith, Martin Hofmann-Apitius, Yongqun Oliver He, Alpha Tom Kodamullil:
CTO: A Community-Based Clinical Trial Ontology and Its Applications in PubChemRDF and SCAIView. ICBO/ODLS 2020: 1-12 - [i3]Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi:
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9: 136 (2020)
2010 – 2019
- 2019
- [j32]Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Jian Zhang, Asta Gindulyte, Evan Bolton:
PUG-View: programmatic access to chemical annotations integrated in PubChem. J. Cheminformatics 11(1): 56:1-56:11 (2019) - [j31]Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton:
PubChem 2019 update: improved access to chemical data. Nucleic Acids Res. 47(Database-Issue): D1102-D1109 (2019) - [j30]Eric W. Sayers, Richa Agarwala, Evan Bolton, J. Rodney Brister, Kathi Canese, Karen Clark, Ryan Connor, Nicolas Fiorini, Kathryn Funk, Timothy Hefferon, J. Bradley Holmes, Sunghwan Kim, Avi Kimchi, Paul A. Kitts, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Aron Marchler-Bauer, Lon Phan, Valerie A. Schneider, Conrad L. Schoch, Kim D. Pruitt, James Ostell:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 47(Database-Issue): D23-D28 (2019) - [c2]Vinh Nguyen, Hong Yung Yip, Harsh Thakkar, Qingliang Li, Evan Bolton, Olivier Bodenreider:
Singleton Property Graph: Adding A Semantic Web Abstraction Layer to Graph Databases. BlockSW/CKG@ISWC 2019 - 2018
- [j29]Volker Hähnke, Sunghwan Kim, Evan Bolton:
PubChem chemical structure standardization. J. Cheminformatics 10(1): 36:1-36:40 (2018) - [j28]Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Evan Bolton:
An update on PUG-REST: RESTful interface for programmatic access to PubChem. Nucleic Acids Res. 46(Webserver-Issue): W563-W570 (2018) - 2016
- [j27]Gang Fu, Ying Ding, Abhik Seal, Bin Chen, Yizhou Sun, Evan Bolton:
Predicting drug target interactions using meta-path-based semantic network analysis. BMC Bioinform. 17: 160 (2016) - [j26]Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Benjamin A. Shoemaker, Jiyao Wang, Evan Bolton, Yanli Wang, Stephen H. Bryant:
Literature information in PubChem: associations between PubChem records and scientific articles. J. Cheminformatics 8(1): 32:1-32:15 (2016) - [j25]Yannick Djoumbou, Roman Eisner, Craig Knox, Leonid L. Chepelev, Janna Hastings, Gareth I. Owen, Eoin Fahy, Christoph Steinbeck, Shankar Subramanian, Evan Bolton, Russell Greiner, David S. Wishart:
ClassyFire: automated chemical classification with a comprehensive, computable taxonomy. J. Cheminformatics 8(1): 61:1-61:20 (2016) - [j24]Sunghwan Kim, Evan Bolton, Stephen H. Bryant:
Similar compounds versus similar conformers: complementarity between PubChem 2-D and 3-D neighboring sets. J. Cheminformatics 8(1): 62:1-62:17 (2016) - [j23]Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Jie Chen, Gang Fu, Asta Gindulyte, Lianyi Han, Jane He, Siqian He, Benjamin A. Shoemaker, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant:
PubChem Substance and Compound databases. Nucleic Acids Res. 44(Database-Issue): 1202-1213 (2016) - 2015
- [j22]Sunghwan Kim, Lianyi Han, Bo Yu, Volker Hähnke, Evan Bolton, Stephen H. Bryant:
PubChem structure-activity relationship (SAR) clusters. J. Cheminformatics 7: 33:1-33:22 (2015) - [j21]Gang Fu, Colin R. Batchelor, Michel Dumontier, Janna Hastings, Egon L. Willighagen, Evan Bolton:
PubChemRDF: towards the semantic annotation of PubChem compound and substance databases. J. Cheminformatics 7: 34:1-34:15 (2015) - [j20]Volker Hähnke, Evan Bolton, Stephen H. Bryant:
PubChem atom environments. J. Cheminformatics 7: 41:1-41:37 (2015) - [j19]Warren A. Kibbe, Cesar Arze, Victor Felix, Elvira Mitraka, Evan Bolton, Gang Fu, Christopher J. Mungall, Janos X. Binder, James Malone, Drashtti Vasant, Helen E. Parkinson, Lynn M. Schriml:
Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data. Nucleic Acids Res. 43(Database-Issue): 1071-1078 (2015) - [j18]Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Stephen H. Bryant:
PUG-SOAP and PUG-REST: web services for programmatic access to chemical information in PubChem. Nucleic Acids Res. 43(Webserver-Issue): W605-W611 (2015) - [c1]Gang Fu, Evan Bolton, Núria Queralt-Rosinach, Laura Inés Furlong, Vinh Nguyen, Amit P. Sheth, Olivier Bodenreider, Michel Dumontier:
Exposing Provenance Metadata Using Different RDF Models. SWAT4LS 2015: 167-176 - [i2]Gang Fu, Evan Bolton, Núria Queralt Rosinach, Laura Inés Furlong, Vinh Nguyen, Amit P. Sheth, Olivier Bodenreider, Michel Dumontier:
Exposing Provenance Metadata Using Different RDF Models. CoRR abs/1509.02822 (2015) - [i1]Vinh Nguyen, Olivier Bodenreider, Krishnaprasad Thirunarayan, Gang Fu, Evan Bolton, Núria Queralt Rosinach, Laura Inés Furlong, Michel Dumontier, Amit P. Sheth:
On Reasoning with RDF Statements about Statements using Singleton Property Triples. CoRR abs/1509.04513 (2015) - 2013
- [j17]Sunghwan Kim, Evan Bolton, Stephen H. Bryant:
PubChem3D: conformer ensemble accuracy. J. Cheminformatics 5: 1 (2013) - [j16]Volker Hähnke, Evan Bolton, Stephen H. Bryant:
PubChem: atom environments for molecule standardization. J. Cheminformatics 5(S-1): 38 (2013) - 2012
- [j15]Sunghwan Kim, Evan Bolton, Stephen H. Bryant:
Effects of multiple conformers per compound upon 3-D similarity search and bioassay data analysis. J. Cheminformatics 4: 28 (2012) - [j14]Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Sergey Krasnov, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 40(Database-Issue): 13-25 (2012) - [j13]Yanli Wang, Jewen Xiao, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Zhigang Zhou, Lianyi Han, Karen Karapetyan, Svetlana Dracheva, Benjamin A. Shoemaker, Evan Bolton, Asta Gindulyte, Stephen H. Bryant:
PubChem's BioAssay Database. Nucleic Acids Res. 40(Database-Issue): 400-412 (2012) - 2011
- [j12]Evan Bolton, Sunghwan Kim, Stephen H. Bryant:
PubChem3D: Conformer generation. J. Cheminformatics 3: 4 (2011) - [j11]Evan Bolton, Sunghwan Kim, Stephen H. Bryant:
PubChem3D: Diversity of shape. J. Cheminformatics 3: 9 (2011) - [j10]Evan Bolton, Sunghwan Kim, Stephen H. Bryant:
PubChem3D: Similar conformers. J. Cheminformatics 3: 13 (2011) - [j9]Sunghwan Kim, Evan Bolton, Stephen H. Bryant:
PubChem3D: Shape compatibility filtering using molecular shape quadrupoles. J. Cheminformatics 3: 25 (2011) - [j8]Sunghwan Kim, Evan Bolton, Stephen H. Bryant:
PubChem3D: Biologically relevant 3-D similarity. J. Cheminformatics 3: 26 (2011) - [j7]Evan Bolton, Jie Chen, Sunghwan Kim, Lianyi Han, Siqian He, Wenyao Shi, Vahan Simonyan, Yan Sun, Paul A. Thiessen, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant:
PubChem3D: a new resource for scientists. J. Cheminformatics 3: 32 (2011) - [j6]Jun D. Zhang, Lewis Y. Geer, Evan Bolton, Stephen H. Bryant:
Automated annotation of chemical names in the literature with tunable accuracy. J. Cheminformatics 3: 52 (2011) - [j5]Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 39(Database-Issue): 38-51 (2011) - 2010
- [j4]Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 38(Database-Issue): 5-16 (2010) - [j3]Yanli Wang, Evan Bolton, Svetlana Dracheva, Karen Karapetyan, Benjamin A. Shoemaker, Tugba O. Suzek, Jiyao Wang, Jewen Xiao, Jian Zhang, Stephen H. Bryant:
An overview of the PubChem BioAssay resource. Nucleic Acids Res. 38(Database-Issue): 255-266 (2010)
2000 – 2009
- 2009
- [j2]Wolf-Dietrich Ihlenfeldt, Evan Bolton, Stephen H. Bryant:
The PubChem chemical structure sketcher. J. Cheminformatics 1: 20 (2009) - 2007
- [j1]Yulia V. Borodina, Evan Bolton, Fabien Fontaine, Stephen H. Bryant:
Assessment of Conformational Ensemble Sizes Necessary for Specific Resolutions of Coverage of Conformational Space. J. Chem. Inf. Model. 47(4): 1428-1437 (2007)
Coauthor Index
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