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ORCIDSophia Kossida
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2020 – today
- 2024
[j24]Anjana Kushwaha, Patrice Duroux, Véronique Giudicelli, Konstantin Todorov, Sofia Kossida:
IMGT/RobustpMHC: robust training for class-I MHC peptide binding prediction. Briefings Bioinform. 25(6) (2024)- [j23]Karina Martinez
, Jon Agirre, Yukie Akune, Kiyoko F. Aoki-Kinoshita, Cecilia N. Arighi, Kristian B. Axelsen, Evan Bolton, Emily Bordeleau, Nathan J. Edwards, Elisa Fadda, Ten Feizi, Catherine A. Hayes, Callum M. Ives, Hiren J. Joshi, Khakurel Krishna Prasad, Sofia Kossida, Frédérique Lisacek, Yan Liu, Thomas Lütteke, Junfeng Ma, Adnan Malik, Maria Jesus Martin, Akul Y. Mehta, Sriram Neelamegham, Kalpana Panneerselvam, René Ranzinger, Sylvie Ricard-Blum, Gaoussou Sanou, Vijay Shanker, Paul D. Thomas, Michael Tiemeyer, James Urban, Randi Vita, Jeet Vora, Yasunori Yamamoto, Raja Mazumder:
Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy. Database J. Biol. Databases Curation 2024 (2024) - 2022
- [j22]Taciana Manso, Géraldine Folch, Véronique Giudicelli, Joumana Jabado-Michaloud, Anjana Kushwaha, Viviane Nguefack Ngoune, Maria Georga, Ariadni Papadaki, Chahrazed Debbagh, Perrine Pégorier, Morgane Bertignac, Saida Hadi-Saljoqi, Imène Chentli, Karima Cherouali, Safa Aouinti, Amar El Hamwi, Alexandre Albani, Merouane Elazami Elhassani, Benjamin Viart, Agathe Goret, Anna Tran, Gaoussou Sanou, Maël Rollin, Patrice Duroux, Sofia Kossida:
IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 50(D1): 1262-1272 (2022) - [c8]Gaoussou Sanou, Véronique Giudicelli, Nika Abdollahi, Sofia Kossida, Konstantin Todorov, Patrice Duroux:
IMGT-KG: A Knowledge Graph for Immunogenetics. ISWC 2022: 628-642
2010 – 2019
- 2017
- [j21]Dimitrios Vlachakis, Alexandros Armaos, Sophia Kossida:
Advanced Protein Alignments Based on Sequence, Structure and Hydropathy Profiles; The Paradigm of the Viral Polymerase Enzyme. Math. Comput. Sci. 11(2): 197-208 (2017) - 2015
- [j20]Marie-Paule Lefranc, Véronique Giudicelli, Patrice Duroux, Joumana Jabado-Michaloud, Géraldine Folch, Safa Aouinti, Emilie Carillon, Hugo Duvergey, Amélie Houles, Typhaine Paysan-Lafosse, Saida Hadi-Saljoqi, Souphatta Sasorith, Gérard Lefranc, Sofia Kossida:
IMGT®, the international ImMunoGeneTics information system® 25 years on. Nucleic Acids Res. 43(Database-Issue): 413-422 (2015) - 2014
- [j19]Georgia Tsiliki, Sophia Kossida, Natalja Friesen, Stefan Rüping, Manolis Tzagarakis, Nikos I. Karacapilidis:
A Data Mining Based Approach for Collaborative Analysis of Biomedical Data. Int. J. Artif. Intell. Tools 23(4) (2014) - [j18]Vassiliki Lila Koumandou, Sophia Kossida:
Evolution of the F0F1 ATP Synthase Complex in Light of the Patchy Distribution of Different Bioenergetic Pathways across Prokaryotes. PLoS Comput. Biol. 10(9) (2014) - [c7]Dimitrios Vlachakis, Alexandros Armaos, Ioannis Kasampalidis, Arianna Filntisi, Sophia Kossida:
ASSP; the Antibody Secondary Structure Profile search tool. ICABD 2014: 69-77 - 2013
- [j17]Georgios A. Dalkas, Dimitrios Vlachakis, Dimosthenis Tsagkrasoulis, Anastasia N. Kastania, Sophia Kossida:
State-of-the-art technology in modern computer-aided drug design. Briefings Bioinform. 14(6): 745-752 (2013) - [j16]Dimitrios Vlachakis, Dimosthenis Tsagkrasoulis, Vasileios Megalooikonomou, Sophia Kossida:
Introducing Drugster: a comprehensive and fully integrated drug design, lead and structure optimization toolkit. Bioinform. 29(1): 126-128 (2013) - [j15]Dimitrios Vlachakis, Dimitrios-Georgios Kontopoulos, Sophia Kossida:
Space Constrained Homology Modelling: The Paradigm of the RNA-Dependent RNA Polymerase of Dengue (Type II) Virus. Comput. Math. Methods Medicine 2013: 108910:1-108910:9 (2013) - [j14]Dimitrios Vlachakis, Sophia Kossida:
Antibody Drug Conjugate Bioinformatics: Drug Delivery through the Letterbox. Comput. Math. Methods Medicine 2013: 282398:1-282398:4 (2013) - [c6]Dimitrios Vlachakis, Georgia Tsiliki, Sophia Kossida:
3D Molecular Modelling of the Helicase Enzyme of the Endemic, Zoonotic Greek Goat Encephalitis Virus. EANN (1) 2013: 165-171 - 2012
- [j13]Charalampos N. Moschopoulos, Marios Fytros, Stamatis Alatsathianos, Spiridon D. Likothanassis, Sophia Kossida:
Gappi: Identifying Important protein Modules through protein-protein Interaction Graphs. Int. J. Artif. Intell. Tools 21(6) (2012) - [c5]Georgia Tsiliki, Sophia Kossida, Natalja Friesen, Stefan Rüping, Manolis Tzagarakis, Nikos I. Karacapilidis:
Data Mining Based Collaborative Analysis of Microarray Data. ICTAI 2012: 682-689 - 2011
- [j12]Georgios A. Pavlopoulos, Maria Secrier, Charalampos N. Moschopoulos, Theodoros G. Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G. Bagos:
Using graph theory to analyze biological networks. BioData Min. 4: 10 (2011) - [j11]Stilianos Arhondakis, Sophia Kossida:
Compositional perspectives on human brain aging. Biosyst. 104(2-3): 94-98 (2011) - [j10]George D. Kritikos, Charalampos N. Moschopoulos, Michalis Vazirgiannis, Sophia Kossida:
Noise reduction in protein-protein interaction graphs by the implementation of a novel weighting scheme. BMC Bioinform. 12: 239 (2011) - [j9]Eleftheria A. Mylona, Michalis A. Savelonas, Dimitris Maroulis, Sophia Kossida:
A Computer-Based Technique for Automated Spot Detection in Proteomics Images. IEEE Trans. Inf. Technol. Biomed. 15(4): 661-667 (2011) - [c4]Charalampos N. Moschopoulos, Grigorios N. Beligiannis, Sophia Kossida, Spiridon D. Likothanassis:
Optimizing Filter Processes on Protein Interaction Clustering Results Using Genetic Algorithms. EANN/AIAI (1) 2011: 463-470 - 2010
- [j8]Anastasia N. Kastania, George Loudos, Nicholas P. Sgouros, Ioannis Constantinou, Maria Vavatsioula, Harisios Boudoulas, Sophia Kossida:
e-Herophilus: 24-hour personalised telecardiology services. Int. J. Electron. Heal. 5(4): 340-354 (2010) - [c3]Eleni Zacharia, Eirini Kostopoulou, Dimitris Maroulis, Sophia Kossida:
A Spot Segmentation Approach for 2D Gel Electrophoresis Images Based on 2D Histograms. ICPR 2010: 2540-2543 - [p2]Vasileios G. Stamatopoulos, George E. Karagiannis, Michael L. Rigby, Sophia Kossida:
Development and Evaluation of a Web-Based Personal Electronic Health Record (pEHR). Web-Based Applications in Healthcare and Biomedicine 2010: 1-12
2000 – 2009
- 2009
- [j7]Georgios A. Pavlopoulos, Charalampos N. Moschopoulos, Sean D. Hooper, Reinhard Schneider, Sophia Kossida:
jClust: a clustering and visualization toolbox. Bioinform. 25(15): 1994-1996 (2009) - [j6]Domenica D'Elia, Andreas Gisel, Nils-Einar Eriksson, Sophia Kossida, Kimmo Mattila, Lubos Klucar, Erik Bongcam-Rudloff:
The 20th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community. BMC Bioinform. 10(S-6) (2009) - [j5]Charalampos N. Moschopoulos, Georgios A. Pavlopoulos, Reinhard Schneider, Spiridon D. Likothanassis, Sophia Kossida:
GIBA: a clustering tool for detecting protein complexes. BMC Bioinform. 10(S-6) (2009) - [j4]Maria G. Roubelakis, Pantelis Zotos, Georgios Papachristoudis, Ioannis Michalopoulos, Kalliopi I. Pappa, Nicholas P. Anagnou, Sophia Kossida:
Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application. BMC Bioinform. 10(S-6) (2009) - [j3]Dimosthenis Tsagkrasoulis, Panagiotis Zerefos, George Loudos, Antonia Vlahou, Marc Baumann, Sophia Kossida:
'Brukin2D': a 2D visualization and comparison tool for LC-MS data. BMC Bioinform. 10(S-6) (2009) - [j2]Eugenia G. Giannopoulou, Spiros D. Garbis, Antonia Vlahou, Sofia Kossida, George Lepouras, Elias S. Manolakos:
Proteomic Feature Maps: A new visualization approach in proteomics analysis. J. Biomed. Informatics 42(4): 644-653 (2009) - 2008
- [j1]Georgios Pampalakis, Maria Arampatzidou, Grigoris D. Amoutzias, Sofia Kossida, Georgia Sotiropoulou:
Identification and analysis of mammalian KLK6 orthologue genes for prediction of physiological substrates. Comput. Biol. Chem. 32(2): 111-121 (2008) - [c2]Charalampos N. Moschopoulos, Georgios A. Pavlopoulos, Spiridon D. Likothanassis, Sofia Kossida:
An enhanced Markov clustering method for detecting protein complexes. BIBE 2008: 1-6 - [c1]Pantelis Zotos, Georgios Papachristoudis, Maria G. Roubelakis, Ioannis Michalopoulos, Kalliopi I. Pappa, Nicholas P. Anagnou, Sophia Kossida:
GOmir: A stand-alone application for human microRNA target analysis and gene ontology clustering. BIBE 2008: 1-6 - [p1]Anastasia N. Kastania, Stelios Zimeras, Sophia Kossida:
A Biosignal Classification Neural Modeling Methodology for Intelligent Hardware Construction. New Directions in Intelligent Interactive Multimedia 2008: 489-495
Coauthor Index
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