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2020 – today
- 2024
[j59]Majid Afshar
, Yanjun Gao, Deepak Gupta, Emma Croxford, Dina Demner-Fushman:
On the role of the UMLS in supporting diagnosis generation proposed by Large Language Models. J. Biomed. Informatics 157: 104707 (2024)- [c171]Deepak Gupta, Dina Demner-Fushman:
Empowering Language Model with Guided Knowledge Fusion for Biomedical Document Re-ranking. AIME (1) 2024: 251-260 - [c170]Brian D. Ondov, Dina Demner-Fushman:
Sentence-Aligned Simplification of Biomedical Abstracts. AIME (1) 2024: 322-333 - [c169]Deepak Gupta, Kush Attal, Dina Demner-Fushman:
Towards Answering Health-related Questions from Medical Videos: Datasets and Approaches. LREC/COLING 2024: 16399-16411 - [c168]Brian D. Ondov, Kush Attal, Dina Demner-Fushman:
Pedagogically Aligned Objectives Create Reliable Automatic Cloze Tests. NAACL-HLT 2024: 3961-3972 - [e19]Dina Demner-Fushman, Sophia Ananiadou, Makoto Miwa, Kirk Roberts, Junichi Tsujii:
Proceedings of the 23rd Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2024, Bangkok, Thailand, August 16, 2024. Association for Computational Linguistics 2024, ISBN 979-8-89176-130-8 [contents] - 2023
- [j58]Alastair R. Rae, James G. Mork, Dina Demner-Fushman:
The National Library of Medicine indexer assignment dataset: A new large-scale dataset for reviewer assignment research. J. Assoc. Inf. Sci. Technol. 74(2): 205-218 (2023) - [j57]Deepak Gupta, Russell F. Loane, Soumya Gayen, Dina Demner-Fushman:
Medical image retrieval via nearest neighbor search on pre-trained image features. Knowl. Based Syst. 278: 110907 (2023) - [e18]Dina Demner-Fushman, Sophia Ananiadou, Kevin Cohen:
The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023. Association for Computational Linguistics 2023 [contents] - [i20]Deepak Gupta, Dina Demner-Fushman:
Empowering Language Model with Guided Knowledge Fusion for Biomedical Document Re-ranking. CoRR abs/2305.04344 (2023) - [i19]Deepak Gupta, Kush Attal, Dina Demner-Fushman:
Towards Answering Health-related Questions from Medical Videos: Datasets and Approaches. CoRR abs/2309.12224 (2023) - 2022
- [j56]Brian D. Ondov, Kush Attal, Dina Demner-Fushman:
A survey of automated methods for biomedical text simplification. J. Am. Medical Informatics Assoc. 29(11): 1976-1988 (2022) - [j55]Shweta Yadav, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman:
Question-aware transformer models for consumer health question summarization. J. Biomed. Informatics 128: 104040 (2022) - [c167]Deepak Gupta, Dina Demner-Fushman:
Overview of the MedVidQA 2022 Shared Task on Medical Video Question-Answering. BioNLP@ACL 2022: 264-274 - [c166]Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, Steven Bedrick, William R. Hersh:
Overview of the TREC 2022 Clinical Trials Track. TREC 2022 - [e17]Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii:
Proceedings of the 21st Workshop on Biomedical Language Processing, BioNLP@ACL 2022, Dublin, Ireland, May 26, 2022. Association for Computational Linguistics 2022, ISBN 978-1-955917-27-8 [contents] - [i18]Deepak Gupta, Kush Attal, Dina Demner-Fushman:
A Dataset for Medical Instructional Video Classification and Question Answering. CoRR abs/2201.12888 (2022) - [i17]Shweta Yadav, Deepak Gupta, Dina Demner-Fushman:
CHQ-Summ: A Dataset for Consumer Healthcare Question Summarization. CoRR abs/2206.06581 (2022) - [i16]Travis R. Goodwin, Dina Demner-Fushman:
Clinical Language Understanding Evaluation (CLUE). CoRR abs/2209.14377 (2022) - [i15]Deepak Gupta, Russell F. Loane, Soumya Gayen, Dina Demner-Fushman:
Medical Image Retrieval via Nearest Neighbor Search on Pre-trained Image Features. CoRR abs/2210.02401 (2022) - [i14]Kush Attal, Brian D. Ondov, Dina Demner-Fushman:
A Dataset for Plain Language Adaptation of Biomedical Abstracts. CoRR abs/2210.12242 (2022) - 2021
- [j54]Mourad Sarrouti, Asma Ben Abacha, Dina Demner-Fushman:
Goal-Driven Visual Question Generation from Radiology Images. Inf. 12(8): 334 (2021) - [j53]Kirk Roberts, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, Kyle Lo, Ian Soboroff, Ellen M. Voorhees, Lucy Lu Wang, William R. Hersh:
Searching for scientific evidence in a pandemic: An overview of TREC-COVID. J. Biomed. Informatics 121: 103865 (2021) - [c165]Dina Demner-Fushman, Willie J. Rogers, James G. Mork:
Automatic recognition of figurative language in biomedical articles. SDU@AAAI 2021 - [c164]Willie Rogers, Alastair R. Rae, Dina Demner-Fushman:
AI-NLM exploration of the Acronym Identification Shared Task at SDU@AAAI-21. SDU@AAAI 2021 - [c163]Shweta Yadav, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman:
Reinforcement Learning for Abstractive Question Summarization with Question-aware Semantic Rewards. ACL/IJCNLP (2) 2021: 249-255 - [c162]Kevin Bretonnel Cohen, Anna M. Ripple, Asma Ben Abacha, Olivier Bodenreider, Orin Hargraves, Karin Verspoor, Pierre Zweigenbaum, Dina Demner-Fushman:
Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know. AMIA 2021 - [c161]Asma Ben Abacha, Yassine Mrabet, Yuhao Zhang, Chaitanya Shivade, Curtis P. Langlotz, Dina Demner-Fushman:
Overview of the MEDIQA 2021 Shared Task on Summarization in the Medical Domain. BioNLP@NAACL-HLT 2021: 74-85 - [c160]Alastair R. Rae, James G. Mork, Dina Demner-Fushman:
A Neural Text Ranking Approach for Automatic MeSH Indexing. CLEF (Working Notes) 2021: 302-312 - [c159]Mourad Sarrouti, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman:
NLM at BioASQ Synergy 2021: Deep Learning-based Methods for Biomedical Semantic Question Answering about COVID-19. CLEF (Working Notes) 2021: 335-350 - [c158]Bogdan Ionescu, Henning Müller, Renaud Péteri, Asma Ben Abacha, Mourad Sarrouti, Dina Demner-Fushman, Sadid A. Hasan, Serge Kozlovski, Vitali Liauchuk, Yashin Dicente Cid, Vassili Kovalev, Obioma Pelka, Alba García Seco de Herrera, Janadhip Jacutprakart, Christoph M. Friedrich, Raul Berari, Andrei Tauteanu, Dimitri Fichou, Paul Brie, Mihai Dogariu, Liviu-Daniel Stefan, Mihai Gabriel Constantin, Jon Chamberlain, Antonio Campello, Adrian F. Clark, Thomas Oliver, Hassan Moustahfid, Adrian Popescu, Jerome Deshayes-Chossart:
Overview of the ImageCLEF 2021: Multimedia Retrieval in Medical, Nature, Internet and Social Media Applications. CLEF 2021: 345-370 - [c157]Asma Ben Abacha, Mourad Sarrouti, Dina Demner-Fushman, Sadid A. Hasan, Henning Müller:
Overview of the VQA-Med Task at ImageCLEF 2021: Visual Question Answering and Generation in the Medical Domain. CLEF (Working Notes) 2021: 1081-1088 - [c156]Bogdan Ionescu, Henning Müller, Renaud Péteri, Asma Ben Abacha, Dina Demner-Fushman, Sadid A. Hasan, Mourad Sarrouti, Obioma Pelka, Christoph M. Friedrich, Alba Garcia Seco de Herrera, Janadhip Jacutprakart, Vassili Kovalev, Serge Kozlovski, Vitali Liauchuk, Yashin Dicente Cid, Jon Chamberlain, Adrian F. Clark, Antonio Campello, Hassan Moustahfid, Thomas Oliver, Abigail Schulz, Paul Brie, Raul Berari, Dimitri Fichou, Andrei Tauteanu, Mihai Dogariu, Liviu-Daniel Stefan, Mihai Gabriel Constantin, Jérôme Deshayes, Adrian Popescu:
The 2021 ImageCLEF Benchmark: Multimedia Retrieval in Medical, Nature, Internet and Social Media Applications. ECIR (2) 2021: 616-623 - [c155]Mourad Sarrouti, Asma Ben Abacha, Yassine Mrabet, Dina Demner-Fushman:
Evidence-based Fact-Checking of Health-related Claims. EMNLP (Findings) 2021: 3499-3512 - [c154]Mourad Sarrouti, Asma Ben Abacha, Dina Demner-Fushman:
Multi-Task Transfer Learning with Data Augmentation for Recognizing Question Entailment in the Medical Domain. ICHI 2021: 339-346 - [e16]Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii:
Proceedings of the 20th Workshop on Biomedical Language Processing, BioNLP@NAACL-HLT 2021, Online, June 11, 2021. Association for Computational Linguistics 2021, ISBN 978-1-954085-40-4 [contents] - [i13]Kirk Roberts, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, Kyle Lo, Ian Soboroff, Ellen M. Voorhees, Lucy Lu Wang, William R. Hersh:
Searching for Scientific Evidence in a Pandemic: An Overview of TREC-COVID. CoRR abs/2104.09632 (2021) - [i12]Shweta Yadav, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman:
Question-aware Transformer Models for Consumer Health Question Summarization. CoRR abs/2106.00219 (2021) - [i11]Shweta Yadav, Deepak Gupta, Asma Ben Abacha, Dina Demner-Fushman:
Reinforcement Learning for Abstractive Question Summarization with Question-aware Semantic Rewards. CoRR abs/2107.00176 (2021) - 2020
- [j52]Dina Demner-Fushman, Yassine Mrabet, Asma Ben Abacha:
Consumer health information and question answering: helping consumers find answers to their health-related information needs. J. Am. Medical Informatics Assoc. 27(2): 194-201 (2020) - [j51]Travis R. Goodwin, Dina Demner-Fushman:
A customizable deep learning model for nosocomial risk prediction from critical care notes with indirect supervision. J. Am. Medical Informatics Assoc. 27(4): 567-576 (2020) - [j50]Kirk Roberts, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, Kyle Lo, Ian Soboroff, Ellen M. Voorhees, Lucy Lu Wang, William R. Hersh:
TREC-COVID: rationale and structure of an information retrieval shared task for COVID-19. J. Am. Medical Informatics Assoc. 27(9): 1431-1436 (2020) - [j49]Surabhi Datta, Yuqi Si, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman, Kirk Roberts:
Understanding spatial language in radiology: Representation framework, annotation, and spatial relation extraction from chest X-ray reports using deep learning. J. Biomed. Informatics 108: 103473 (2020) - [j48]Ellen M. Voorhees, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, William R. Hersh, Kyle Lo, Kirk Roberts, Ian Soboroff, Lucy Lu Wang:
TREC-COVID: constructing a pandemic information retrieval test collection. SIGIR Forum 54(1): 1:1-1:12 (2020) - [c153]Alastair R. Rae, David O. Pritchard, James G. Mork, Dina Demner-Fushman:
Automatic MeSH Indexing: Revisiting the Subheading Attachment Problem. AMIA 2020 - [c152]Asma Ben Abacha, Vivek V. Datla, Sadid A. Hasan, Dina Demner-Fushman, Henning Müller:
Overview of the VQA-Med Task at ImageCLEF 2020: Visual Question Answering and Generation in the Medical Domain. CLEF (Working Notes) 2020 - [c151]Bogdan Ionescu, Henning Müller, Renaud Péteri, Asma Ben Abacha, Vivek V. Datla, Sadid A. Hasan, Dina Demner-Fushman, Serge Kozlovski, Vitali Liauchuk, Yashin Dicente Cid, Vassili Kovalev, Obioma Pelka, Christoph M. Friedrich, Alba García Seco de Herrera, Van-Tu Ninh, Tu-Khiem Le, Liting Zhou, Luca Piras, Michael Riegler, Pål Halvorsen, Minh-Triet Tran, Mathias Lux, Cathal Gurrin, Duc-Tien Dang-Nguyen, Jon Chamberlain, Adrian F. Clark, Antonio Campello, Dimitri Fichou, Raul Berari, Paul Brie, Mihai Dogariu, Liviu-Daniel Stefan, Mihai Gabriel Constantin:
Overview of the ImageCLEF 2020: Multimedia Retrieval in Medical, Lifelogging, Nature, and Internet Applications. CLEF 2020: 311-341 - [c150]Travis R. Goodwin, Max E. Savery, Dina Demner-Fushman:
Flight of the PEGASUS? Comparing Transformers on Few-shot and Zero-shot Multi-document Abstractive Summarization. COLING 2020: 5640-5646 - [c149]Yassine Mrabet, Dina Demner-Fushman:
HOLMS: Alternative Summary Evaluation with Large Language Models. COLING 2020: 5679-5688 - [c148]Bogdan Ionescu, Henning Müller, Renaud Péteri, Duc-Tien Dang-Nguyen, Liting Zhou, Luca Piras, Michael Riegler, Pål Halvorsen, Minh-Triet Tran, Mathias Lux, Cathal Gurrin, Jon Chamberlain, Adrian F. Clark, Antonio Campello, Alba Garcia Seco de Herrera, Asma Ben Abacha, Vivek V. Datla, Sadid A. Hasan, Joey Liu, Dina Demner-Fushman, Obioma Pelka, Christoph M. Friedrich, Yashin Dicente Cid, Serge Kozlovski, Vitali Liauchuk, Vassili Kovalev, Raul Berari, Paul Brie, Dimitri Fichou, Mihai Dogariu, Liviu-Daniel Stefan, Mihai Gabriel Constantin:
ImageCLEF 2020: Multimedia Retrieval in Lifelogging, Medical, Nature, and Internet Applications. ECIR (2) 2020: 533-541 - [c147]Travis R. Goodwin, Max E. Savery, Dina Demner-Fushman:
Towards Zero Shot Conditional Summarization with Adaptive Multi-task Fine-Tuning. EMNLP (Findings) 2020: 3215-3226 - [c146]Yassine Mrabet, Mourad Sarrouti, Asma Ben Abacha, Soumya Gayen, Travis R. Goodwin, Alastair R. Rae, Willie Rogers, Dina Demner-Fushman:
NLM at TREC 2020 Health Misinformation and Deep Learning Tracks. TREC 2020 - [c145]Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, Steven Bedrick, William R. Hersh:
Overview of the TREC 2020 Precision Medicine Track. TREC 2020 - [e15]Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii:
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, BioNLP 2020, Online, July 9, 2020. Association for Computational Linguistics 2020, ISBN 978-1-952148-09-5 [contents] - [i10]Ellen M. Voorhees, Tasmeer Alam, Steven Bedrick, Dina Demner-Fushman, William R. Hersh, Kyle Lo, Kirk Roberts, Ian Soboroff, Lucy Lu Wang:
TREC-COVID: Constructing a Pandemic Information Retrieval Test Collection. CoRR abs/2005.04474 (2020) - [i9]Max E. Savery, Asma Ben Abacha, Soumya Gayen, Dina Demner-Fushman:
Question-Driven Summarization of Answers to Consumer Health Questions. CoRR abs/2005.09067 (2020)
2010 – 2019
- 2019
- [j47]Asma Ben Abacha, Dina Demner-Fushman:
A question-entailment approach to question answering. BMC Bioinform. 20(1): 511:1-511:23 (2019) - [j46]Chris J. Lu, Alan R. Aronson, Sonya E. Shooshan, Dina Demner-Fushman:
Spell checker for consumer language (CSpell). J. Am. Medical Informatics Assoc. 26(3): 211-218 (2019) - [c144]Asma Ben Abacha, Dina Demner-Fushman:
On the Summarization of Consumer Health Questions. ACL (1) 2019: 2228-2234 - [c143]Travis R. Goodwin, Dina Demner-Fushman:
Deep Learning from Incomplete Data: Detecting Imminent Risk of Hospital-acquired Pneumonia in ICU Patients. AMIA 2019 - [c142]Chris J. Lu, Amanda Payne, Dina Demner-Fushman:
Classification Types: A New Feature in the SPECIALIST Lexicon. AMIA 2019 - [c141]Yuqing Mao, Kin Wah Fung, Dina Demner-Fushman:
Drug-drug Interaction Extraction via Transfer Learning. AMIA 2019 - [c140]Alastair R. Rae, Max E. Savery, James G. Mork, Dina Demner-Fushman:
A High Recall Classifier for Selecting Articles for MEDLINE Indexing. AMIA 2019 - [c139]Max E. Savery, Melanie Huston, James G. Mork, Olga Printseva, Susan Schmidt, Alastair R. Rae, Dina Demner-Fushman:
Evaluation of System for Selective Indexing Classification. AMIA 2019 - [c138]Asma Ben Abacha, Chaitanya Shivade, Dina Demner-Fushman:
Overview of the MEDIQA 2019 Shared Task on Textual Inference, Question Entailment and Question Answering. BioNLP@ACL 2019: 370-379 - [c137]Asma Ben Abacha, Sadid A. Hasan, Vivek V. Datla, Joey Liu, Dina Demner-Fushman, Henning Müller:
VQA-Med: Overview of the Medical Visual Question Answering Task at ImageCLEF 2019. CLEF (Working Notes) 2019 - [c136]Bogdan Ionescu, Henning Müller, Renaud Péteri, Yashin Dicente Cid, Vitali Liauchuk, Vassili Kovalev, Dzmitri Klimuk, Aleh Tarasau, Asma Ben Abacha, Sadid A. Hasan, Vivek V. Datla, Joey Liu, Dina Demner-Fushman, Duc-Tien Dang-Nguyen, Luca Piras, Michael Riegler, Minh-Triet Tran, Mathias Lux, Cathal Gurrin, Obioma Pelka, Christoph M. Friedrich, Alba Garcia Seco de Herrera, Narciso García, Ergina Kavallieratou, Carlos Roberto del-Blanco, Carlos Cuevas, Nikos Vasilopoulos, Konstantinos Karampidis, Jon Chamberlain, Adrian F. Clark, Antonio Campello:
ImageCLEF 2019: Multimedia Retrieval in Medicine, Lifelogging, Security and Nature. CLEF 2019: 358-386 - [c135]Bogdan Ionescu, Henning Müller, Renaud Péteri, Duc-Tien Dang-Nguyen, Luca Piras, Michael Riegler, Minh-Triet Tran, Mathias Lux, Cathal Gurrin, Yashin Dicente Cid, Vitali Liauchuk, Vassili Kovalev, Asma Ben Abacha, Sadid A. Hasan, Vivek V. Datla, Joey Liu, Dina Demner-Fushman, Obioma Pelka, Christoph M. Friedrich, Jon Chamberlain, Adrian F. Clark, Alba Garcia Seco de Herrera, Narciso García, Ergina Kavallieratou, Carlos Roberto del-Blanco, Carlos Cuevas, Nikos Vasilopoulos, Konstantinos Karampidis:
ImageCLEF 2019: Multimedia Retrieval in Lifelogging, Medical, Nature, and Security Applications. ECIR (2) 2019: 301-308 - [c134]Asma Ben Abacha, Yassine Mrabet, Mark Sharp, Travis R. Goodwin, Sonya E. Shooshan, Dina Demner-Fushman:
Bridging the Gap Between Consumers' Medication Questions and Trusted Answers. MedInfo 2019: 25-29 - [c133]Alastair R. Rae, James G. Mork, Dina Demner-Fushman:
Convolutional Neural Network for Automatic MeSH Indexing. PKDD/ECML Workshops (2) 2019: 581-594 - [c132]Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh, Steven Bedrick, Alexander J. Lazar, Shubham Pant, Funda Meric-Bernstam:
Overview of the TREC 2019 Precision Medicine Track. TREC 2019 - [e14]Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii:
Proceedings of the 18th BioNLP Workshop and Shared Task, BioNLP@ACL 2019, Florence, Italy, August 1, 2019. Association for Computational Linguistics 2019, ISBN 978-1-950737-28-4 [contents] - [i8]Yassine Mrabet, Dina Demner-Fushman:
On Agreements in Visual Understanding. ViGIL@NeurIPS 2019 - [i7]Travis R. Goodwin, Dina Demner-Fushman, Kin Wah Fung, Phong Do:
Overview of the TAC 2019 Track on Drug-Drug Interaction Extraction from Drug Labels. TAC 2019 - [i6]Asma Ben Abacha, Dina Demner-Fushman:
A Question-Entailment Approach to Question Answering. CoRR abs/1901.08079 (2019) - [i5]Surabhi Datta, Yuqi Si, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman, Kirk Roberts:
Understanding Spatial Language in Radiology: Representation Framework, Annotation, and Spatial Relation Extraction from Chest X-ray Reports using Deep Learning. CoRR abs/1908.04485 (2019) - [i4]Travis R. Goodwin, Dina Demner-Fushman:
Bridging the Knowledge Gap: Enhancing Question Answering with World and Domain Knowledge. CoRR abs/1910.07429 (2019) - 2018
- [j45]Halil Kilicoglu, Asma Ben Abacha, Yassine Mrabet, Sonya E. Shooshan, Laritza Rodriguez, Kate Masterton, Dina Demner-Fushman:
Semantic annotation of consumer health questions. BMC Bioinform. 19(1): 34:1-34:28 (2018) - [c131]Dina Demner-Fushman, James G. Mork, Willie J. Rogers, Sonya E. Shooshan, Laritza M. Rodriguez, Alan R. Aronson:
Finding medication doses in the literature. AMIA 2018 - [c130]Dina Demner-Fushman, Joseph M. Tonning, Kin Wah Fung, Phong Do, Richard D. Boyce, Kirk Roberts:
Adverse Reactions and Drug-Drug Interaction Extraction tracks at the Text Analysis Conference (TAC). AMIA 2018 - [c129]François-Michel Lang, James G. Mork, Dina Demner-Fushman, Alan R. Aronson:
Increasing UMLS Coverage and Reducing Ambiguity via Automated Creation of Synonymous Terms. AMIA 2018 - [c128]Chris J. Lu, Dina Demner-Fushman:
Improving Spelling Correction with Consumer Health Terminology. AMIA 2018 - [c127]Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh, Steven Bedrick, Alexander J. Lazar, Shubham Pant:
Benchmarking Information Retrieval for Precision Oncology: the TREC Precision Medicine Track. AMIA 2018 - [c126]Asma Ben Abacha, Soumya Gayen, Jason J. Lau, Sivaramakrishnan Rajaraman, Dina Demner-Fushman:
NLM at ImageCLEF 2018 Visual Question Answering in the Medical Domain. CLEF (Working Notes) 2018 - [c125]Dina Demner-Fushman:
Clinical, Consumer Health, and Visual Question Answering. SIMBig 2018: 1-6 - [c124]Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh, Steven Bedrick, Alexander J. Lazar:
Overview of the TREC 2018 Precision Medicine Track. TREC 2018 - [e13]Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii:
Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018. Association for Computational Linguistics 2018, ISBN 978-1-948087-33-9 [contents] - [i3]Dina Demner-Fushman, Kin Wah Fung, Phong Do, Richard D. Boyce, Travis R. Goodwin:
Overview of the TAC 2018 Drug-Drug Interaction Extraction from Drug Labels Track. TAC 2018 - 2017
- [j44]Trevor Cohen, Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, George Alter, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu:
A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation 2017: bax061 (2017) - [j43]Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Trevor Cohen, Hua Xu:
Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation 2017: bax068 (2017) - [j42]James G. Mork, Alan R. Aronson, Dina Demner-Fushman:
12 years on - Is the NLM medical text indexer still useful and relevant? J. Biomed. Semant. 8(1): 8:1-8:10 (2017) - [j41]Kevin Zhang, Dina Demner-Fushman:
Automated classification of eligibility criteria in clinical trials to facilitate patient-trial matching for specific patient populations. J. Am. Medical Informatics Assoc. 24(4): 781-787 (2017) - [j40]Dina Demner-Fushman, Willie J. Rogers, Alan R. Aronson:
MetaMap Lite: an evaluation of a new Java implementation of MetaMap. J. Am. Medical Informatics Assoc. 24(4): 841-844 (2017) - [j39]Ariel Deardorff, Kate Masterton, Kirk Roberts, Halil Kilicoglu, Dina Demner-Fushman:
A protocol-driven approach to automatically finding authoritative answers to consumer health questions in online resources. J. Assoc. Inf. Sci. Technol. 68(7): 1724-1736 (2017) - [c123]Yassine Mrabet, Halil Kilicoglu, Dina Demner-Fushman:
TextFlow: A Text Similarity Measure based on Continuous Sequences. ACL (1) 2017: 763-772 - [c122]Dina Demner-Fushman, Willie J. Rogers:
CTB: A Custom Taxonomy Builder for Named Entity Extraction. AMIA 2017 - [c121]Tracy Edinger, Dina Demner-Fushman, Aaron M. Cohen, Steven Bedrick, William R. Hersh:
Evaluation of Clinical Text Segmentation to Facilitate Cohort Retrieval. AMIA 2017 - [c120]François-Michel Lang, Dina Demner-Fushman:
New MetaMap Features for Processing Numerical Tables. AMIA 2017 - [c119]Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, Trevor Cohen, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu:
Information Retrieval for Biomedical Datasets: The 2016 bioCADDIE Challenge. AMIA 2017 - [c118]Laritza M. Rodriguez, Stephanie M. Morrison, Kathleen Greenberg, Dina Demner-Fushman:
Mining the literature for genes associated with placenta-mediated maternal diseases. AMIA 2017 - [c117]Asma Ben Abacha, Alba Garcia Seco de Herrera, Ke Wang, L. Rodney Long, Sameer K. Antani, Dina Demner-Fushman:
Named entity recognition in functional neuroimaging literature. BIBM 2017: 2218-2220 - [c116]Asma Ben Abacha, Alba Garcia Seco de Herrera, Soumya Gayen, Dina Demner-Fushman, Sameer K. Antani:
NLM at ImageCLEF 2017 Caption Task. CLEF (Working Notes) 2017 - [c115]Asma Ben Abacha, Dina Demner-Fushman:
NLM_NIH at SemEval-2017 Task 3: from Question Entailment to Question Similarity for Community Question Answering. SemEval@ACL 2017: 349-352 - [c114]Asma Ben Abacha, Eugene Agichtein, Yuval Pinter, Dina Demner-Fushman:
Overview of the Medical Question Answering Task at TREC 2017 LiveQA. TREC 2017 - [c113]Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh, Steven Bedrick, Alexander J. Lazar, Shubham Pant:
Overview of the TREC 2017 Precision Medicine Track. TREC 2017 - [e12]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Junichi Tsujii:
BioNLP 2017, Vancouver, Canada, August 4, 2017. Association for Computational Linguistics 2017, ISBN 978-1-945626-59-3 [contents] - [i2]Kirk Roberts, Dina Demner-Fushman, Joseph M. Tonning:
Overview of the TAC 2017 Adverse Reaction Extraction from Drug Labels Track. TAC 2017 - 2016
- [j38]Asma Ben Abacha, Dina Demner-Fushman:
Meta-Learning with Selective Data Augmentation for Medical Entity Recognition. Int. J. Comput. Linguistics Appl. 7(2): 167-182 (2016) - [j37]Kirk Roberts, Matthew S. Simpson, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh:
State-of-the-art in biomedical literature retrieval for clinical cases: a survey of the TREC 2014 CDS track. Inf. Retr. J. 19(1-2): 113-148 (2016) - [j36]Dina Demner-Fushman, Marc D. Kohli, Marc B. Rosenman, Sonya E. Shooshan, Laritza Rodriguez, Sameer K. Antani, George R. Thoma, Clement J. McDonald:
Preparing a collection of radiology examinations for distribution and retrieval. J. Am. Medical Informatics Assoc. 23(2): 304-310 (2016) - [j35]Kirk Roberts, Dina Demner-Fushman:
Interactive use of online health resources: a comparison of consumer and professional questions. J. Am. Medical Informatics Assoc. 23(4): 802-811 (2016) - [c112]Yassine Mrabet, Pavlos Vougiouklis, Halil Kilicoglu, Claire Gardent, Dina Demner-Fushman, Jonathon S. Hare, Elena Simperl:
Aligning Texts and Knowledge Bases with Semantic Sentence Simplification. WebNLG 2016: 29-36 - [c111]Asma Ben Abacha, Dina Demner-Fushman:
Recognizing Question Entailment for Medical Question Answering. AMIA 2016 - [c110]Stéphane M. Meystre, Hongfang Liu, Rong Xu, Sivaram Arabandi, Kavishwar B. Wagholikar, Jon D. Patrick, Guergana K. Savova, Chunhua Weng, Pierre Zweigenbaum, Dina Demner-Fushman, Özlem Uzuner, Hua Xu:
Natural Language Processing Working Group Pre-Symposium: Graduate Student Consortium and 'Hackathon'. AMIA 2016 - [c109]James G. Mork, Dina Demner-Fushman:
Resolving Hierarchical Ambiguity in Indexing Recommendations. AMIA 2016 - [c108]Yassine Mrabet, Halil Kilicoglu, Kirk Roberts, Dina Demner-Fushman:
Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions. AMIA 2016 - [c107]Kirk Roberts, Laritza M. Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman:
Resource Classification for Medical Questions. AMIA 2016 - [c106]Laritza M. Rodriguez, Stephanie M. Morrison, Kathleen Greenberg, Dina Demner-Fushman:
Towards automatic discovery of Genes related to Human Placenta. AMIA 2016 - [c105]Zhiyun Xue, Md. Mahmudur Rahman, Sameer K. Antani, L. Rodney Long, Dina Demner-Fushman, George R. Thoma:
Modality Classification for Searching Figures in Biomedical Literature. CBMS 2016: 152-157 - [c104]Suchet K. Chachra, Asma Ben Abacha, Sonya E. Shooshan, Laritza Rodriguez, Dina Demner-Fushman:
A Hybrid Approach to Generation of Missing Abstracts in Biomedical Literature. COLING 2016: 1093-1100 - [c103]Hoo-Chang Shin, Kirk Roberts, Le Lu, Dina Demner-Fushman, Jianhua Yao, Ronald M. Summers:
Learning to Read Chest X-Rays: Recurrent Neural Cascade Model for Automated Image Annotation. CVPR 2016: 2497-2506 - [c102]Yassine Mrabet, Halil Kilicoglu, Dina Demner-Fushman:
Unsupervised Ranking of Knowledge Bases for Named Entity Recognition. ECAI 2016: 1248-1255 - [c101]Halil Kilicoglu, Asma Ben Abacha, Yassine Mrabet, Kirk Roberts, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman:
Annotating Named Entities in Consumer Health Questions. LREC 2016 - [c100]Kirk Roberts, Dina Demner-Fushman:
Annotating Logical Forms for EHR Questions. LREC 2016 - [c99]Kirk Roberts, Dina Demner-Fushman, Ellen M. Voorhees, William R. Hersh:
Overview of the TREC 2016 Clinical Decision Support Track. TREC 2016 - [e11]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii:
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2016, Berlin, Germany, August 12, 2016. Association for Computational Linguistics 2016, ISBN 978-1-945626-12-8 [contents] - [e10]Sophia Ananiadou, Riza Batista-Navarro, Kevin Bretonnel Cohen, Dina Demner-Fushman, Paul Thompson:
Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining, BioTxtM@COLING 2016, Osaka, Japan, December 12, 2016. The COLING 2016 Organizing Committee 2016, ISBN 978-4-87974-719-8 [contents] - [i1]Hoo-Chang Shin, Kirk Roberts, Le Lu, Dina Demner-Fushman, Jianhua Yao, Ronald M. Summers:
Learning to Read Chest X-Rays: Recurrent Neural Cascade Model for Automated Image Annotation. CoRR abs/1603.08486 (2016) - 2015
- [j34]Dina Demner-Fushman, Sameer K. Antani, Jayashree Kalpathy-Cramer, Henning Müller:
A decade of community-wide efforts in advancing medical image understanding and retrieval. Comput. Medical Imaging Graph. 39: 1-2 (2015) - [j33]Matthew S. Simpson, Daekeun You, Md. Mahmudur Rahman, Zhiyun Xue, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma:
Literature-based biomedical image classification and retrieval. Comput. Medical Imaging Graph. 39: 3-13 (2015) - [j32]Jayashree Kalpathy-Cramer, Alba Garcia Seco de Herrera, Dina Demner-Fushman, Sameer K. Antani, Steven Bedrick, Henning Müller:
Evaluating performance of biomedical image retrieval systems - An overview of the medical image retrieval task at ImageCLEF 2004-2013. Comput. Medical Imaging Graph. 39: 55-61 (2015) - [j31]Kirk Roberts, Sonya E. Shooshan, Laritza Rodriguez, Swapna Abhyankar, Halil Kilicoglu, Dina Demner-Fushman:
The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs. J. Biomed. Informatics 58: S111-S119 (2015) - [c98]Amos Cahan, Sonya E. Shooshan, Laritza Rodriguez, Dina Demner-Fushman:
Automated searches for personalized evidence to prevent hospital acquired infection. AMIA 2015 - [c97]Dina Demner-Fushman, James G. Mork:
Extracting Characteristics of the Study Subjects from Full-Text Articles. AMIA 2015 - [c96]Halil Kilicoglu, Marcelo Fiszman, Kirk Roberts, Dina Demner-Fushman:
An Ensemble Method for Spelling Correction in Consumer Health Questions. AMIA 2015 - [c95]Kirk Roberts, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman:
Automatic Extraction and Post-coordination of Spatial Relations in Consumer Language. AMIA 2015 - [c94]Laritza Rodriguez, Dina Demner-Fushman:
Automatic Classification of Structured Product Labels for Pregnancy Risk Drug Categories, a Machine Learning Approach. AMIA 2015 - [c93]Zhiyun Xue, Sema Candemir, Sameer K. Antani, L. Rodney Long, Stefan Jaeger, Dina Demner-Fushman, George R. Thoma:
Foreign object detection in chest X-rays. BIBM 2015: 956-961 - [c92]Dina Demner-Fushman, Sonya E. Shooshan, Laritza Rodriguez, Sameer K. Antani, George R. Thoma:
Annotation of Chest Radiology Reports for Indexing and Retrieval. MRDM@ECIR 2015: 99-111 - [e9]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii:
Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, Beijing, China, July 30, 2015. Association for Computational Linguistics 2015 [contents] - 2014
- [j30]Md. Mahmudur Rahman, Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
Interactive cross and multimodal biomedical image retrieval based on automatic region-of-interest (ROI) identification and classification. Int. J. Multim. Inf. Retr. 3(3): 131-146 (2014) - [j29]Matthew S. Simpson, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma:
Multimodal biomedical image indexing and retrieval using descriptive text and global feature mapping. Inf. Retr. 17(3): 229-264 (2014) - [j28]Swapna Abhyankar, Dina Demner-Fushman, Fiona M. Callaghan, Clement J. McDonald:
Research and applications: Combining structured and unstructured data to identify a cohort of ICU patients who received dialysis. J. Am. Medical Informatics Assoc. 21(5): 801-807 (2014) - [c91]Fiona M. Callaghan, Dina Demner-Fushman, Swapna Abhyankar, Matthew T. Jackson, Mallika Mundkur, Clement J. McDonald:
Addressing some statistical challenges of using EHR data for clinical research. AMIA 2014 - [c90]James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson:
Vocabulary Density Method for Customized Indexing of MEDLINE Journals. AMIA 2014 - [c89]Kirk Roberts, Amos Cahan, Dina Demner-Fushman:
Error Propagation in EHRs via Copy/Paste: An Analysis of Relative Dates. AMIA 2014 - [c88]Kirk Roberts, Halil Kilicoglu, Marcelo Fiszman, Dina Demner-Fushman:
Automatically Classifying Question Types for Consumer Health Questions. AMIA 2014 - [c87]Johann Stan, Olivier Bodenreider, Kin Wah Fung, Dina Demner-Fushman:
Facilitating Reconciliation of Inter-Annotator Disagreements. AMIA 2014 - [c86]Daekeun You, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
Biomedical image segmentation for semantic visual feature extraction. BIBM 2014: 289-292 - [c85]Kirk Roberts, Halil Kilicoglu, Marcelo Fiszman, Dina Demner-Fushman:
Decomposing Consumer Health Questions. BioNLP@ACL 2014: 29-37 - [c84]Halil Kilicoglu, Dina Demner-Fushman:
Coreference Resolution for Structured Drug Product Labels. BioNLP@ACL 2014: 45-53 - [c83]Zhiyun Xue, Sameer K. Antani, L. Rodney Long, Dina Demner-Fushman, George R. Thoma:
Body Segment Classification for Visible Human Cross Section Slices. CBMS 2014: 199-204 - [c82]Daekeun You, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
Does Figure-Text Improve Biomedical Article Retrieval? A Pilot Study. CBMS 2014: 471-472 - [c81]Daekeun You, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
An MRF Model for Biomedical Image Segmentation. CBMS 2014: 539-540 - [c80]James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson:
Recent Enhancements to the NLM Medical Text Indexer. CLEF (Working Notes) 2014: 1328-1336 - [c79]Suchet K. Chachra, Zhiyun Xue, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
Extraction and labeling high-resolution images from PDF documents. DRR 2014: 90210Q-90210Q-9 - [c78]Daekeun You, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
A contour-based shape descriptor for biomedical image classification and retrieval. DRR 2014: 90210L-90210L-12 - [c77]Kirk Roberts, Kate Masterton, Marcelo Fiszman, Halil Kilicoglu, Dina Demner-Fushman:
Annotating Question Decomposition on Complex Medical Questions. LREC 2014: 2598-2602 - [c76]Glauco Vitor Pedrosa, Md. Mahmudur Rahman, Sameer K. Antani, Dina Demner-Fushman, L. Rodney Long, Agma J. M. Traina:
Integrating visual words as bunch of n-grams for effective biomedical image classification. WACV 2014: 431-436 - [e8]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii:
Proceedings of BioNLP, Baltimore, Maryland, USA, BioNLP@ACL 2014, June 27-28, 2014. Association for Computational Linguistics 2014, ISBN 978-1-941643-18-1 [contents] - 2013
- [j27]Md. Mahmudur Rahman, Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
Multimodal biomedical image retrieval using hierarchical classification and modality fusion. Int. J. Multim. Inf. Retr. 2(3): 159-173 (2013) - [j26]Kin Wah Fung, Chiang S. Jao, Dina Demner-Fushman:
Extracting drug indication information from structured product labels using natural language processing. J. Am. Medical Informatics Assoc. 20(3): 482-488 (2013) - [j25]Emilia Apostolova, Daekeun You, Zhiyun Xue, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
Image retrieval from scientific publications: Text and image content processing to separate multipanel figures. J. Assoc. Inf. Sci. Technol. 64(5): 893-908 (2013) - [c75]Swapna Abhyankar, Dina Demner-Fushman:
A simple method to extract key maternal data from neonatal clinical notes. AMIA 2013 - [c74]Dina Demner-Fushman, James G. Mork, Alan R. Aronson:
Mining MEDLINE for problems associated with vitamin D. AMIA 2013 - [c73]Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson:
Comparison and combination of several MeSH indexing approaches. AMIA 2013 - [c72]Halil Kilicoglu, Marcelo Fiszman, Dina Demner-Fushman:
Interpreting Consumer Health Questions: The Role of Anaphora and Ellipsis. BioNLP@ACL 2013: 54-62 - [c71]Alba Garcia Seco de Herrera, Jayashree Kalpathy-Cramer, Dina Demner-Fushman, Sameer K. Antani, Henning Müller:
Overview of the ImageCLEF 2013 Medical Tasks. CLEF (Working Notes) 2013 - [c70]Matthew S. Simpson, Daekeun You, Md. Mahmudur Rahman, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma:
ITI's Participation in the 2013 Medical Track of ImageCLEF. CLEF (Working Notes) 2013 - [c69]Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
Annotating image ROIs with text descriptions for multimodal biomedical document retrieval. DRR 2013: 86580D - [c68]Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
A robust pointer segmentation in biomedical images toward building a visual ontology for biomedical article retrieval. DRR 2013: 86580Q - [c67]Zhiyun Xue, Sameer K. Antani, L. Rodney Long, Dina Demner-Fushman, George R. Thoma:
Classification of CT Figures in Biomedical Articles Based on Body Segments. ICHI 2013: 264-268 - [c66]Dina Demner-Fushman, Charlotte A. Seckman, Cheryl Fisher, George R. Thoma:
Continual Development of a Personalized Decision Support System. MedInfo 2013: 175-179 - [e7]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Junichi Tsujii:
Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2013, Sofia, Bulgaria, August 8, 2013. Association for Computational Linguistics 2013, ISBN 978-1-937284-54-1 [contents] - 2012
- [j24]Tanja Bekhuis, Dina Demner-Fushman:
Screening nonrandomized studies for medical systematic reviews: A comparative study of classifiers. Artif. Intell. Medicine 55(3): 197-207 (2012) - [j23]Swapna Abhyankar, Dina Demner-Fushman, Clement J. McDonald:
Standardizing clinical laboratory data for secondary use. J. Biomed. Informatics 45(4): 642-650 (2012) - [j22]Bastien Rance, Emily Doughty, Dina Demner-Fushman, Maricel G. Kann, Olivier Bodenreider:
A mutation-centric approach to identifying pharmacogenomic relations in text. J. Biomed. Informatics 45(5): 835-841 (2012) - [j21]Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson:
A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection Based on Meta-Learning. J. Comput. Sci. Eng. 6(2): 151-160 (2012) - [j20]Dina Demner-Fushman, Sameer K. Antani, Matthew S. Simpson, George R. Thoma:
Design and Development of a Multimodal Biomedical Information Retrieval System. J. Comput. Sci. Eng. 6(2): 168-177 (2012) - [c65]Tanja Bekhuis, Dina Demner-Fushman, Rebecca S. Crowley:
Research Designs in Mesh and Emtree: A Comparative Study of Coverage. AMIA 2012 - [c64]Matthew S. Simpson, Daekeun You, Md. Mahmudur Rahman, Sameer K. Antani, George R. Thoma, Dina Demner-Fushman:
Towards the Creation of a Visual Ontology of Biomedical Imaging Entities. AMIA 2012 - [c63]Zhiyun Xue, Sameer K. Antani, L. Rodney Long, Dina Demner-Fushman, George R. Thoma:
Window Classification of Brain CT Images in Biomedical Articles. AMIA 2012 - [c62]Emilia Apostolova, Noriko Tomuro, Pattanasak Mongkolwat, Dina Demner-Fushman:
Domain Adaptation of Coreference Resolution for Radiology Reports. BioNLP@HLT-NAACL 2012: 118-121 - [c61]Henning Müller, Alba Garcia Seco de Herrera, Jayashree Kalpathy-Cramer, Dina Demner-Fushman, Sameer K. Antani, Ivan Eggel:
Overview of the ImageCLEF 2012 Medical Image Retrieval and Classification Tasks. CLEF (Online Working Notes/Labs/Workshop) 2012 - [c60]Matthew S. Simpson, Daekeun You, Md. Mahmudur Rahman, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma:
ITI's Participation in the ImageCLEF 2012 Medical Retrieval and Classification Tasks. CLEF (Online Working Notes/Labs/Workshop) 2012 - [c59]Dina Demner-Fushman, Swapna Abhyankar:
Syntactic-Semantic Frames for Clinical Cohort Identification Queries. DILS 2012: 100-112 - [c58]Md. Mahmudur Rahman, Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
An Interactive Image Retrieval Framework for Biomedical Articles Based on Visual Region-of- Interest (ROI) Identification and Classification. HISB 2012: 50 - [c57]Antonio Jimeno-Yepes, James G. Mork, Bartlomiej Wilkowski, Dina Demner-Fushman, Alan R. Aronson:
MEDLINE MeSH indexing: lessons learned from machine learning and future directions. IHI 2012: 737-742 - [c56]Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, François-Michel Lang, James G. Mork, Nicolas Ide, Alan R. Aronson:
NLM at TREC 2012 Medical Records Track. TREC 2012 - [p1]Matthew S. Simpson, Dina Demner-Fushman:
Biomedical Text Mining: A Survey of Recent Progress. Mining Text Data 2012: 465-517 - [e6]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Bonnie L. Webber, Jun'ichi Tsujii, John Pestian:
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, BioNLP@HLT-NAACL Montrèal, Canada, June 8, 2012. Association for Computational Linguistics 2012, ISBN 978-1-937284-20-6 [contents] - 2011
- [j19]Ronald Joe Stanley, Soumya De, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma:
An image feature-based approach to automatically find images for application to clinical decision support. Comput. Medical Imaging Graph. 35(5): 365-372 (2011) - [c55]Emilia Apostolova, Noriko Tomuro, Dina Demner-Fushman:
Automatic Extraction of Lexico-Syntactic Patterns for Detection of Negation and Speculation Scopes. ACL (2) 2011: 283-287 - [c54]Matthew S. Simpson, Md. Mahmudur Rahman, Srinivas Phadnis, Emilia Apostolova, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma:
Text and Content-based Approaches to Image Modality Classification and Retrieval for the ImageCLEF 2011 Medical Retrieval Track. CLEF (Notebook Papers/Labs/Workshop) 2011 - [c53]Daekeun You, Sameer K. Antani, Dina Demner-Fushman, Md. Mahmudur Rahman, Venu Govindaraju, George R. Thoma:
Automatic identification of ROI in figure images toward improving hybrid (text and image) biomedical document retrieval. DRR 2011: 78740K - [c52]Daekeun You, Sameer K. Antani, Dina Demner-Fushman, Venu Govindaraju, George R. Thoma:
Detecting Figure-Panel Labels in Medical Journal Articles Using MRF. ICDAR 2011: 967-971 - [c51]Md. Mahmudur Rahman, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
Biomedical Image Retrieval Using Multimodal Context and Concept Feature Spaces. MCBR-CDS 2011: 24-35 - [c50]Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, Bastien Rance, François-Michel Lang, Nicholas C. Ide, Emilia Apostolova, Alan R. Aronson:
A Knowledge-Based Approach to Medical Records Retrieval. TREC 2011 - [e5]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber:
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, BioNLP@ACL, Portland, Oregon, USA, June 23-24, 2011. Association for Computational Linguistics 2011, ISBN 978-1-932432-91-6 [contents] - 2010
- [j18]James G. Mork, Olivier Bodenreider, Dina Demner-Fushman, Rezarta Islamaj Dogan, François-Michel Lang, Zhiyong Lu, Aurélie Névéol, Lee B. Peters, Sonya E. Shooshan, Alan R. Aronson:
Extracting Rx information from clinical narrative. J. Am. Medical Informatics Assoc. 17(5): 536-539 (2010) - [j17]Dina Demner-Fushman, James G. Mork, Sonya E. Shooshan, Alan R. Aronson:
UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text. J. Biomed. Informatics 43(4): 587-594 (2010) - [j16]George R. Thoma, Glenn Ford, Sameer K. Antani, Dina Demner-Fushman, Michael Chung, Matthew S. Simpson:
Interactive publication: The document as a research tool. J. Web Semant. 8(2-3): 145-150 (2010) - [c49]Matthew S. Simpson, Md. Mahmudur Rahman, Sachin Singhal, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma:
Text- and Content-based Approaches to Image Modality Detection and Retrieval for the ImageCLEF 2010 Medical Retrieval Track. CLEF (Notebook Papers/LABs/Workshops) 2010 - [c48]Daekeun You, Sameer K. Antani, Dina Demner-Fushman, Md. Mahmudur Rahman, Venu Govindaraju, George R. Thoma:
Biomedical article retrieval using multimodal features and image annotations in region-based CBIR. DRR 2010: 75340V - [c47]Tanja Bekhuis, Dina Demner-Fushman:
Towards Automating the Initial Screening Phase of a Systematic Review. MedInfo 2010: 146-150 - [c46]Emilia Apostolova, Noriko Tomuro, Dina Demner-Fushman:
Identifying contextual information in clinical texts: a study of two domains. Semantic Mining in Biomedicine 2010 - [e4]K. Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber:
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010. Association for Computational Linguistics 2010, ISBN 978-1-932432-73-2 [contents]
2000 – 2009
- 2009
- [j15]Casey Lynnette Overby, Peter Tarczy-Hornoch, Dina Demner-Fushman:
The potential for automated question answering in the context of genomic medicine: an assessment of existing resources and properties of answers. BMC Bioinform. 10(S-9): 8 (2009) - [j14]Dina Demner-Fushman, Sameer K. Antani, Matthew S. Simpson, George R. Thoma:
Annotation and retrieval of clinically relevant images. Int. J. Medical Informatics 78(12): 59-67 (2009) - [j13]Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch, Nancy L. Wilczynski, R. Brian Haynes:
Viewpoint Paper: Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence. J. Am. Medical Informatics Assoc. 16(1): 25-31 (2009) - [j12]Dina Demner-Fushman, Wendy Webber Chapman, Clement J. McDonald:
What can natural language processing do for clinical decision support? J. Biomed. Informatics 42(5): 760-772 (2009) - [j11]Marcelo Fiszman, Dina Demner-Fushman, Halil Kilicoglu, Thomas C. Rindflesch:
Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation. J. Biomed. Informatics 42(5): 801-813 (2009) - [c45]Matthew S. Simpson, Md. Mahmudur Rahman, Dina Demner-Fushman, Sameer K. Antani, George R. Thoma:
Text- and Content-based Approaches to Image Retrieval for the ImageCLEF 2009 Medical Retrieval Track. CLEF (Working Notes) 2009 - [c44]Daekeun You, Emilia Apostolova, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
Figure content analysis for improved biomedical article retrieval. DRR 2009: 72470V - [c43]Matthew S. Simpson, Dina Demner-Fushman, Charles Sneiderman, Sameer K. Antani, George R. Thoma:
Using Non-Lexical Features to Identify Effective Indexing Terms for Biomedical Illustrations. EACL 2009: 737-744 - [c42]Md. Mahmudur Rahman, Sameer K. Antani, L. Rodney Long, Dina Demner-Fushman, George R. Thoma:
Multi-modal Query Expansion Based on Local Analysis for Medical Image Retrieval. MCBR-CDS 2009: 110-119 - [c41]Emilia Apostolova, Dina Demner-Fushman:
Towards Automatic Image Region Annotation - Image Region Textual Coreference Resolution. HLT-NAACL (Short Papers) 2009: 41-44 - [e3]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber:
Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009. Association for Computational Linguistics 2009, ISBN 978-1-932432-30-5 [contents] - 2008
- [j10]Dina Demner-Fushman, Sophia Ananiadou, K. Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber:
Themes in biomedical natural language processing: BioNLP08. BMC Bioinform. 9(S-11) (2008) - [c40]Dina Demner-Fushman:
Adapting Naturally Occurring Test Suites for Evaluation of Clinical Question Answering. SETQALNLP 2008: 21-22 - [c39]Alan R. Aronson, James G. Mork, Aurélie Névéol, Sonya E. Shooshan, Dina Demner-Fushman:
Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing. AMIA 2008 - [c38]Dina Demner-Fushman, Charlotte A. Seckman, Cheryl Fisher, Susan E. Hauser, Jennifer Clayton, George R. Thoma:
A Prototype System to Support Evidence-based Practice. AMIA 2008 - [c37]Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch, Nancy L. Wilczynski, R. Brian Haynes:
Toward Automatic Recognition of High Quality Clinical Evidence. AMIA 2008 - [c36]Sameer K. Antani, Dina Demner-Fushman, Jiang Li, Balaji Vasan Srinivasan, George R. Thoma:
Exploring use of images in clinical articles for decision support in evidence-based medicine. DRR 2008: 68150Q - [e2]Dina Demner-Fushman, Sophia Ananiadou, Kevin Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber:
Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, BioNLP 2008, Columbus, Ohio, USA, June 19, 2008. Association for Computational Linguistics 2008, ISBN 978-1-932432-11-4 [contents] - 2007
- [j9]Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, Kevin Bretonnel Cohen:
Frontiers of biomedical text mining: current progress. Briefings Bioinform. 8(5): 358-375 (2007) - [j8]Dina Demner-Fushman, Jimmy Lin:
Answering Clinical Questions with Knowledge-Based and Statistical Techniques. Comput. Linguistics 33(1): 63-103 (2007) - [j7]Nicholas C. Ide, Russell F. Loane, Dina Demner-Fushman:
Application of Information Technology: Essie: A Concept-based Search Engine for Structured Biomedical Text. J. Am. Medical Informatics Assoc. 14(3): 253-263 (2007) - [j6]Charles Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Nicholas C. Ide, Thomas C. Rindflesch:
Research Paper: Knowledge-based Methods to Help Clinicians Find Answers in MEDLINE. J. Am. Medical Informatics Assoc. 14(6): 772-780 (2007) - [j5]Susan E. Hauser, Dina Demner-Fushman, Joshua L. Jacobs, Susanne M. Humphrey, Glenn Ford, George R. Thoma:
Research Paper: Using Wireless Handheld Computers to Seek Information at the Point of Care: An Evaluation by Clinicians. J. Am. Medical Informatics Assoc. 14(6): 807-815 (2007) - [c35]Jimmy Lin, Dina Demner-Fushman:
Semantic Clustering of Answers to Clinical Questions. AMIA 2007 - [c34]Alan R. Aronson, Olivier Bodenreider, Dina Demner-Fushman, Kin Wah Fung, Vivian K. Lee, James G. Mork, Aurélie Névéol, Lee B. Peters, Willie J. Rogers:
From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. BioNLP@ACL 2007: 105-112 - [c33]Marcelo Fiszman, Dina Demner-Fushman, François-Michel Lang, Philip Goetz, Thomas C. Rindflesch:
Interpreting comparative constructions in biomedical text. BioNLP@ACL 2007: 137-144 - [c32]Dina Demner-Fushman, Sameer K. Antani, Mohammad-Reza Siadat, Hamid Soltanian-Zadeh, Farshad Fotouhi, Kost V. Elisevich:
Automatically Finding Images for Clinical Decision Support. ICDM Workshops 2007: 139-144 - [c31]Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, K. Bretonnel Cohen:
Session Introduction. Pacific Symposium on Biocomputing 2007: 205-208 - [c30]Caroline B. Ahlers, Marcelo Fiszman, Dina Demner-Fushman, François-Michel Lang, Thomas C. Rindflesch:
Extracting Semantic Predications from Medline Citations for Pharmacogenomics. Pacific Symposium on Biocomputing 2007: 209-220 - [c29]Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, James G. Mork, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, W. John Wilbur, Alan R. Aronson:
Combining Resources to Find Answers to Biomedical Questions. TREC 2007 - [e1]K. Bretonnel Cohen, Dina Demner-Fushman, Carol Friedman, Lynette Hirschman, John Pestian:
Biological, translational, and clinical language processing, BioNLP@ACL 2007, Prague, Czech Republic, June 29, 2007. Association for Computational Linguistics 2007 [contents] - 2006
- [j4]Jimmy Lin, Dina Demner-Fushman:
Methods for automatically evaluating answers to complex questions. Inf. Retr. 9(5): 565-587 (2006) - [j3]Dina Demner-Fushman, Barbara Few, Susan E. Hauser, George R. Thoma:
Research Paper: Automatically Identifying Health Outcome Information in MEDLINE Records. J. Am. Medical Informatics Assoc. 13(1): 52-60 (2006) - [j2]Susanne M. Humphrey, Willie J. Rogers, Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch:
Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment. J. Assoc. Inf. Sci. Technol. 57(1): 96-113 (2006) - [c28]Dina Demner-Fushman, Jimmy Lin:
Answer Extraction, Semantic Clustering, and Extractive Summarization for Clinical Question Answering. ACL 2006 - [c27]Dina Demner-Fushman, Susan E. Hauser, Susanne M. Humphrey, Glenn Ford, Joshua L. Jacobs, George R. Thoma:
MEDLINE as a Source of Just-in-Time Answers to Clinical Questions. AMIA 2006 - [c26]Susan E. Hauser, Dina Demner-Fushman, Glenn Ford, Joshua L. Jacobs, George R. Thoma:
Preliminary Comparison of Three Search Engines for Point of Care Access to MEDLINE® Citations. AMIA 2006 - [c25]Xiaoli Huang, Jimmy Lin, Dina Demner-Fushman:
Evaluation of PICO as a Knowledge Representation for Clinical Questions. AMIA 2006 - [c24]Charles Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Graciela Rosemblat, François-Michel Lang, Daphne Norwood, Thomas C. Rindflesch:
Semantic Processing to Enhance Retrieval of Diagnosis Citations from Medline. AMIA 2006 - [c23]Jimmy Lin, Damianos G. Karakos, Dina Demner-Fushman, Sanjeev Khudanpur:
Generative Content Models for Structural Analysis of Medical Abstracts. BioNLP@NAACL-HLT 2006: 65-72 - [c22]Jimmy Lin, Dina Demner-Fushman:
Will Pyramids Built of Nuggets Topple Over?. HLT-NAACL 2006 - [c21]Jimmy Lin, Dina Demner-Fushman:
The role of knowledge in conceptual retrieval: a study in the domain of clinical medicine. SIGIR 2006: 99-106 - [c20]Jimmy Lin, Philip Fei Wu, Dina Demner-Fushman, Eileen G. Abels:
Exploring the limits of single-iteration clarification dialogs. SIGIR 2006: 469-476 - [c19]Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Alan R. Aronson:
Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort. TREC 2006 - 2005
- [c18]Jimmy Lin, Dina Demner-Fushman:
Evaluating Summaries and Answers: Two Sides of the Same Coin? IEEvaluation@ACL 2005: 41-48 - [c17]Dina Demner-Fushman, Susan E. Hauser, George R. Thoma:
The Role of Title, Metadata and Abstract in Identifying Clinically Relevant Journal Articles. AMIA 2005 - [c16]Jimmy Lin, Dina Demner-Fushman:
"Bag of Words" is not enough for Strength of Evidence Classification. AMIA 2005 - [c15]Charles Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Thomas C. Rindflesch:
Semantic characteristics of MEDLINE citations useful for therapeutic decision-making. AMIA 2005 - [c14]Jimmy Lin, Dina Demner-Fushman:
Automatically Evaluating Answers to Definition Questions. HLT/EMNLP 2005: 931-938 - [c13]Alan R. Aronson, Dina Demner-Fushman, Susanne M. Humphrey, Jimmy Lin, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Hongfang Liu:
Fusion of Knowledge-Intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents. TREC 2005 - [c12]Jimmy Lin, Eileen G. Abels, Dina Demner-Fushman, Douglas W. Oard, Philip Fei Wu, Yejun Wu:
A Menagerie of Tracks at Maryland: HARD, Enterprise, QA, and Genomics, Oh My! TREC 2005 - 2004
- [c11]Susan E. Hauser, Dina Demner-Fushman, Glenn Ford, George R. Thoma:
A Testbed System for Mobile Point-of-Care Information Delivery. CBMS 2004: 147-152 - [c10]Dina Demner-Fushman, Susan E. Hauser, Glenn Ford, George R. Thoma:
Organizing Literature Information for Clinical Decision Support. MedInfo 2004: 602-606 - [c9]Gregory L. Alexander, Susan E. Hauser, Karen Steely, Glenn Ford, Dina Demner-Fushman:
A Usability Study of the PubMed on Tap User Interface for PDAs. MedInfo 2004: 1411-1415 - [c8]Susan E. Hauser, Dina Demner-Fushman, Glenn Ford, George R. Thoma:
PubMed on Tap: Discovering Design Principles for Online Information Delivery to Handheld Computers. MedInfo 2004: 1430-1433 - [c7]Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Won Kim, Russell F. Loane, James G. Mork, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Natalie Xie, Dina Demner-Fushman, Hongfang Liu:
Knowledge-Intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations. TREC 2004 - [c6]Daqing He, Dina Demner-Fushman, Douglas W. Oard, Damianos G. Karakos, Sanjeev Khudanpur:
Improving Passage Retrieval Using Interactive Elicition and Statistical Modeling. TREC 2004 - 2003
- [j1]Daqing He, Douglas W. Oard, Jianqiang Wang, Jun Luo, Dina Demner-Fushman, Kareem Darwish, Philip Resnik, Sanjeev Khudanpur, Michael Nossal, Michael Subotin, Anton Leuski:
Making MIRACLEs: Interactive translingual search for Cebuano and Hindi. ACM Trans. Asian Lang. Inf. Process. 2(3): 219-244 (2003) - [c5]Susan E. Hauser, Jonathan Schlaifer, Tehseen F. Sabir, Dina Demner-Fushman, Scott Straughan, George R. Thoma:
Correcting OCR text by association with historical datasets. DRR 2003: 84-93 - [c4]Dina Demner-Fushman, Douglas W. Oard:
The Effect of Bilingual Term List Size on Dictionary-Based Cross-Language Information Retrieval. HICSS 2003: 108 - [c3]Mehmet Kayaalp, Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Lorraine K. Tanabe, Lawrence H. Smith, Dina Demner-Fushman, Russell F. Loane, James G. Mork, Olivier Bodenreider:
Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics. TREC 2003: 441-450 - [c2]Daqing He, Dina Demner-Fushman:
HARD Experiment at Maryland: From Need Negotiation to Automated HARD Process. TREC 2003: 707-714 - 2002
- [c1]Douglas W. Oard, Dina Demner-Fushman, Jan Hajic, Bhuvana Ramabhadran, Samuel Gustman, William J. Byrne, Dagobert Soergel, Bonnie J. Dorr, Philip Resnik, Michael Picheny:
Cross-Language Access to Recorded Speech in the MALACH Project. TSD 2002: 57-64
Coauthor Index
Alba Garcia Seco de Herrera
aka: Alba García Seco de Herrera
aka: Alba García Seco de Herrera
Md Mahmudur Rahman
aka: Md. Mahmudur Rahman
aka: Md. Mahmudur Rahman
Laritza Rodriguez
aka: Laritza M. Rodriguez
aka: Laritza M. Rodriguez
Jun'ichi Tsujii
aka: Junichi Tsujii
aka: Junichi Tsujii
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