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Carlo Colantuoni
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2020 – today
- 2023
- [j8]Seth A. Ament, Ricky S. Adkins, Robert Carter, Elena Chrysostomou, Carlo Colantuoni, Jonathan Crabtree, Heather Huot Creasy, Kylee Degatano, Victor Felix, Peter Gandt, Gwenn a Garden, Michelle G. Giglio, Brian R. Herb, Farzaneh Khajouei, Elizabeth Kiernan, Carrie McCracken, Kennedy McDaniel, Suvarna Nadendla, Lance Nickel, Dustin Olley, Joshua Orvis, Joseph P. Receveur, Mike Schor, Shreyash Sonthalia, Timothy L. Tickle, Jessica Way, Ronna Hertzano, Anup A. Mahurkar, Owen R. White:
The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 51(D1): 1075-1085 (2023) - 2022
- [j7]Alex M. Casella, Carlo Colantuoni, Seth A. Ament:
Identifying enhancer properties associated with genetic risk for complex traits using regulome-wide association studies. PLoS Comput. Biol. 18(9): 1010430 (2022) - 2021
- [j6]Eric W. Bridgeford, Shangsi Wang, Zeyi Wang, Ting Xu, R. Cameron Craddock, Jayanta Dey, Gregory Kiar, William R. Gray Roncal, Carlo Colantuoni, Christopher Douville, Stephanie Noble, Carey E. Priebe, Brian Caffo, Michael P. Milham, Xi-Nian Zuo, Joshua T. Vogelstein:
Eliminating accidental deviations to minimize generalization error and maximize replicability: Applications in connectomics and genomics. PLoS Comput. Biol. 17(9) (2021) - 2020
- [j5]Gaurav Sharma, Carlo Colantuoni, Loyal A. Goff, Elana J. Fertig, Genevieve L. Stein-O'Brien:
projectR: an R/Bioconductor package for transfer learning via PCA, NMF, correlation and clustering. Bioinform. 36(11): 3592-3593 (2020)
2010 – 2019
- 2017
- [j4]Genevieve L. Stein-O'Brien, Jacob L. Carey, Waishing Lee, Michael Considine, Alexander V. Favorov, Emily Flam, Theresa Guo, Sijia Li, Luigi Marchionni, Thomas Sherman, Shawn Sivy, Daria A. Gaykalova, Ronald McKay, Michael F. Ochs, Carlo Colantuoni, Elana J. Fertig:
PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF. Bioinform. 33(12): 1892-1894 (2017) - 2016
- [j3]Andrew E. Jaffe, Thomas Hyde, Joel Kleinman, Daniel R. Weinberger, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek, Carlo Colantuoni:
Erratum to: Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis. BMC Bioinform. 17: 302 (2016) - 2015
- [j2]Andrew E. Jaffe, Thomas Hyde, Joel Kleinman, Daniel Weinbergern, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek, Carlo Colantuoni:
Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis. BMC Bioinform. 16: 372:1-372:10 (2015)
2000 – 2009
- 2002
- [j1]Carlo Colantuoni, George Henry, Scott Zeger, Jonathan Pevsner:
SNOMAD (Standardization and NOrmalization of MicroArray Data): web-accessible gene expression data analysis. Bioinform. 18(11): 1540-1541 (2002)
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