Extracting Interpretable Knowledge from the Remote Monitoring of COVID-19 Patients
Abstract
:1. Introduction
2. Materials and Methods
2.1. Overview of Data
- Age;
- Weight;
- Sex;
- Medical history, including the following:
- ○
- Comorbidities (asthma, hypertension, hyperlipidemia, diabetes, chronic obstructive pulmonary disease (COPD), and coronary heart disease);
- ○
- Smoking;
- ○
- Medications;
- COVID-19 history, including the following:
- ○
- Date of SARS-CoV-2 positive test;
- ○
- Onset of COVID-19 symptoms;
- ○
- Number of COVID-19 vaccine doses administered if vaccinated;
- ○
- Date of last COVID-19 vaccination dose;
- ○
- COVID-19 vaccine manufacturer;
- ○
- Initial symptoms;
- ○
- Previous SARS-CoV-2 infection.
- Heart rate;
- Blood pressure;
- Oxygen saturation level;
- Body temperature;
- Respiratory rate;
- Weight;
- Glucose (if appropriate, e.g., diabetic patients).
2.2. The Proposed Methodology
2.2.1. Data Preparation
- Classification of the mMRC Grade;
- Time-To-Event (TTE) analysis of fever remission.
2.2.2. Classification and Interpretability Methodology
- Dataset preparation, where the data are partitioned into subgroups or assimilated as a whole by each underlying learning model according to the ensemble classifier strategy.
- Ensemble classification, where base classifiers are trained in parallel or serially, and their predictions are aggregated to produce the output of the ensemble classifier [36].
- Ensemble interpretability, where base classifiers return an importance value for each individual input feature in the final result, and the importance values for each feature of the base classifiers are summed following the ensemble model logic.
2.2.3. Time-to-Event Analysis Methodology
3. Experimental Results
3.1. Classification
3.2. Interpretability
3.3. Improving Models through Feature Variable Selection
- Days since the last dose;
- Age;
- Asthma;
- Heart rate;
- Diastolic pressure;
- Systolic pressure;
- Body temperature;
- Weight.
3.4. Time-to-Event Analysis for Fever Remission
4. The System in Practice
4.1. Platform for Data Collection
4.2. Platform for Data Analysis
GET/daybyday_inference?&cls_type=RF&sex_flag=1.0&days_ahead=3&age_lower_flag=50&age_upper_flag=80 |
GET/cox_regression/?follow_up_period_flag=2&sex_flag=1&age_lower_flag=20&initial_positive_test_date_lower_flag=2020-12-03&initial_positive_test_date_upper_flag=2022-04-30 |
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Demographic and Clinical Characteristics of Patients | |
---|---|
Variable | Data |
Patients, N | 162 |
Age, years (median, IQR) | 51 (42–60) |
Sex, N (%) | |
Male | 72 (44.4) |
Female | 90 (55.6) |
Smoking status, N (%) | |
Yes | 87 (53.7) |
No | 75 (46.3) |
Comorbidities, N (%) | 35 (21.6) |
Hypertension | 33 |
Hyperlipidemia | 33 |
Coronary artery disease | 5 |
Diabetes | 4 |
Thyroid disease | 4 |
Asthma | 4 |
COPD | 2 |
Weight, kg (mean ± SD) | 70.57 ± 11.94 |
Vaccination status, N (%) | |
4 doses | 1 (0.6) |
3 doses | 113 (69.8) |
2 doses | 37 (22.8) |
1 dose | 5 (3.1) |
Unvaccinated | 6 (3.7) |
Vaccine type, N (%) | |
Pfizer | 142 (87.6) |
Moderna | 5 (3.1) |
Johnson & Johnson | 5 (3.1) |
AstraZeneca | 4 (2.5) |
Days since the last vaccine dose (median, IQR) | 120 (88–160) |
Previous infection, N (%) | 6 (3.7) |
Days from positive test prior to enrolment (median, IQR) | 3 (1–11) |
Days of symptoms prior to enrolment (median, IQR) | 3 (2–5) |
Days of monitoring (median, IQR) | 14 (13–15) |
mMRC Scale | |
---|---|
Grade | Description |
1 | No shortness of breath or shortness of breath only during strenuous work. |
2 | Shortness of breath when walking quickly on level ground or a slight incline. |
3 | You walk more slowly than people of the same age on level ground because of shortness of breath or stop for breath if you walk alone. |
4 | Stopping for breath after walking for about 100 m or after a few minutes of walking on a level surface. |
5 | Too breathless to leave the house or breathless when dressing/undressing. |
Day | mMRC Grade 1 | mMRC Grade 2 |
---|---|---|
0 | 1018 | 146 |
1 | 938 | 134 |
2 | 861 | 120 |
3 | 791 | 105 |
4 | 721 | 92 |
5 | 647 | 79 |
6 | 574 | 68 |
7 | 520 | 60 |
8 | 430 | 48 |
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Tziomaka, M.; Kallipolitis, A.; Menychtas, A.; Gallos, P.; Panagopoulos, C.; Vassiliou, A.G.; Jahaj, E.; Dimopoulou, I.; Kotanidou, A.; Maglogiannis, I. Extracting Interpretable Knowledge from the Remote Monitoring of COVID-19 Patients. Mach. Learn. Knowl. Extr. 2024, 6, 1323-1342. https://doi.org/10.3390/make6020062
Tziomaka M, Kallipolitis A, Menychtas A, Gallos P, Panagopoulos C, Vassiliou AG, Jahaj E, Dimopoulou I, Kotanidou A, Maglogiannis I. Extracting Interpretable Knowledge from the Remote Monitoring of COVID-19 Patients. Machine Learning and Knowledge Extraction. 2024; 6(2):1323-1342. https://doi.org/10.3390/make6020062
Chicago/Turabian StyleTziomaka, Melina, Athanasios Kallipolitis, Andreas Menychtas, Parisis Gallos, Christos Panagopoulos, Alice Georgia Vassiliou, Edison Jahaj, Ioanna Dimopoulou, Anastasia Kotanidou, and Ilias Maglogiannis. 2024. "Extracting Interpretable Knowledge from the Remote Monitoring of COVID-19 Patients" Machine Learning and Knowledge Extraction 6, no. 2: 1323-1342. https://doi.org/10.3390/make6020062