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1. GenomicTuples GenomicTuples Public

   Representation and Manipulation of Genomic Tuples in R

   R 4

2. methtuple methtuple Public

   methtuple is a methylation caller for methylation events that co-occur on the same DNA fragment from high-throughput bisulfite sequencing data, such as methylC-seq.

   Python 12 3

3. hansenlab/bsseq hansenlab/bsseq Public

   Devel repository for bsseq

   R 35 25

4. DelayedMatrixStats DelayedMatrixStats Public

   A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package

   R 15 7

5. DSArray DSArray Public archive

   Compressed In-Memory Representation of 3-Dimensional Arrays That Contain Many Duplicate Slices

   R 1

6. bwa-parclip bwa-parclip Public

   Forked from brentp/bwa-meth

   An experimental hack of bwa-meth to align PAR-CLIP reads

   Python