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1. exaloop/codon exaloop/codon Public

   A high-performance, zero-overhead, extensible Python compiler using LLVM

   C++ 15.1k 521

2. seq-lang/seq seq-lang/seq Public archive

   A high-performance, Pythonic language for bioinformatics

   C++ 700 50

3. 0xTCG/aldy 0xTCG/aldy Public

   Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

   C 57 20

4. sfu-compbio/compression-benchmark sfu-compbio/compression-benchmark Public

   Python 22 4

5. 0xTCG/biser 0xTCG/biser Public

   A fast tool for detecting and decomposing segmental duplications in genome assemblies

   Jupyter Notebook 41

6. sfu-compbio/deez sfu-compbio/deez Public

   DeeNA Zip (SAM/BAM compression tool)

   C++ 13 4