Skip to content
View telatin's full-sized avatar
:octocat:
:octocat:

Organizations

@bioconda @quadram-institute-bioscience @AMR-Hackathon-2021

Block or report telatin

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
telatin/README.md

Hello! 👋

I'm a bioinformatician working on microbial (meta)genomics :DNA:

🤖 I like tinkering with nextflow:

📦 Some tools are available via Bioconda :

🧬 🚀 seqfu ⛰️ bamtocov 🖌️ dadaist2 🛠️ qax
GitHub Repo stars Fast toolkit for FASTX manipulation and inspection to extract coverage tracks from BAM files to analyze 16s/ITS from reads to R utilities for Qiime2 artifacts

📖 I use GitHub also for training material

📓 microbiome bioinformatics 🧔 Personal website 💻 bash training 🎥 Companion videos
Some tutorials A small blog Toy files to practice Bash A Youtube channel

I'm using Mastodon

Pinned Loading

  1. seqfu2 seqfu2 Public

    🚀 seqfu - Sequece Fastx Utilities

    Nim 111 7

  2. covtobed covtobed Public

    ⛰ covtobed | Convert the coverage track from a BAM file into a BED file

    C++ 43 3

  3. bamtocov bamtocov Public

    🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

    Nim 60 6

  4. gan gan Public

    📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria

    Python 35 6

  5. learn_bash learn_bash Public

    Toy files and training material to introduce Linux to molecular biologists

    Python 22 4

  6. nextflow-example nextflow-example Public

    A simple DSL2 workflow: tutorial

    Nextflow 25 7