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Pull requests: tseemann/prokka

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Pull requests list

Convert Travis CI to Github Actions
#662 opened May 2, 2023 by rpetit3 Loading…
Update READEME.md
#649 opened Oct 27, 2022 by huoww07 Loading…
Update README.md
#625 opened Mar 18, 2022 by aboffin Loading…
2
Use the version module to parse Bioperl version strings
#619 opened Mar 4, 2022 by prehensilecode Loading…
Link --proteins section of manual to fasta-db-format section
#611 opened Jan 21, 2022 by 0xaf1f Loading…
1
Fix a typo in README.md
#570 opened May 27, 2021 by sixvable Loading…
Update README.md
#543 opened Dec 18, 2020 by stepan-mammothbio Loading…
Prodigal: don't set metagenome mode if training file given
#538 opened Dec 2, 2020 by jvolkening Loading…
Use version objects for version cmp
#517 opened Aug 24, 2020 by kiwiroy Loading…
Speed up overlap lookup in CDS stage
#493 opened May 17, 2020 by fluhus Loading…
tbl2asn disable by default
#475 opened Mar 26, 2020 by blazejszczerba Loading…
1
Closing .fsa and .fna files
#451 opened Jan 16, 2020 by almahmoud Loading…
2
CPAN compliant and TAP compliant 🎁
#404 opened Aug 8, 2019 by lskatz Loading…
1
Add an option to turn off tbl2asn tbl2asn
#386 opened May 21, 2019 by kodrzywolek Loading…
@tseemann
1
Use GNU-parallel to run prodigal faster enhancement
#267 opened Nov 15, 2017 by mruehlemann Loading…
@tseemann
1
Added support for partial genes prokka-1.12
#219 opened Feb 23, 2017 by jennahd Loading…
2
Fixes #180 : Use Glimmer input file instead of embedded call to Prodigal enhancement
#181 opened Jul 5, 2016 by blawlor Loading…
@tseemann
Added a --check option to test dependencies to prokka and report enhancement
#175 opened Jun 14, 2016 by Slugger70 Loading…
@tseemann
preserve contig names with --centre/--compliant
#132 opened Jul 15, 2015 by spock Loading…
1
URLs for MAXCONTIGIDLEN limit
#131 opened Jul 15, 2015 by spock Loading…
3
check if input file is compressed (gziped/bzip2ed) and open accordingly
#130 opened Jul 15, 2015 by mdcao Loading…
3
Allowed process substitution as input
#128 opened Jul 6, 2015 by scwatts Loading…
Use indexed BLAST DB if already exists enhancement
#124 opened Jun 25, 2015 by cnthornton Loading…
@tseemann
2
Adding support for partial genes
#37 opened Aug 28, 2014 by lguy Loading…
5
Multiple EC_number tags for CDSs, lower case initials in /product descriptions for prokka-1.9.1-testing
#18 opened May 30, 2014 by aleimba Loading…
1
ProTip! Follow long discussions with comments:>50.