… with algorithms for aligning two whole genomes so as to … , we initiate the study of an
optimization problem that attempts to … formulation is the tolerance of noise, which also complicates …

… on k-noisy clusters, we first investigate the optimization problem of finding an alignment that
… Max-min alignment problem: We define the weight of a k-noisy cluster C as follows. Note that …

… whole genome alignment has resulted in efficient tools to locate (possibly) conserved regions
of two genomic … Note that a lot of these anchors may come from noise. The next step is to …

… Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Research,
30, No.11, 2002. … Efficient algorithms for optimizing whole genome alignment with noise. …

… Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Research…
An efficient algorithm for optimizing whole genome alignment with noise. Bioinformatics, 20(…

… coverage of whole genomes or particular genomic regions. … technologies is a larger margin
of noise in sequencing data [5]. … demand for efficient algorithms for read alignment. Over the …

… (2) We propose to use whole genome alignment software (… the noise and identify the
conserved regions along the whole … trees - metrics and efficient algorithms. In Proceedings of the …

… whole genome alignment has resulted in efficient tools to locate (possibly) conserved regions
of two genomic … Note that a lot of these anchors may come from noise. The next step is to …

… and computationally efficient algorithms are required to improve … If the cost of whole genome
sequencing can be pushed … as the systematic noise, while E i is the random noise. The cross…

… the relatively complete genome sequence (Fig. 1). Based on the assembled … high noisy
data and reconstructs the assembly graph and contigs correspondingly, making it highly efficient …