… MetaHipMer implements an iterative de Bruijn graph approach similar to IDBA-UD [6] …
metagenome assembler that achieves comparable quality to the state-of-theart tools, but scales …

… Since metagenome assembly is not within the original … errors in the scaffolding of a
metagenome, we will only execute … HipMer to properly scaffold a metagenome at scale. As shown …

… for our metagenomic sequencing method, as well as the score we propose for de novo …
We adopt a view of the metagenomic sequence assembly problem in which two competing …

… Hipmer: an extreme-scale de novo genome assembler. In SC’15: Proceedings of the …
Extreme scale de novo metagenome assembly. In SC18: International Conference for High …

… algorithms for de novo assembly with the ambition to scale to … -performance de novo assembler
designed to scale to massive … Ray meta: Scalable de novo metagenome assembly and …

… In order to address the aforementioned problems, we present a novel framework based on
DIvide, conquer, and MErge strategies (DIME) for de novo metagenomic assembly. The four …

… unusual archaeal genomes by de novo metagenomic assembly of multiple, … assembled
genomes to visualize these novel archaea, which were highly abundant in the 0.1–0.8 μm size …

… Here, we demonstrate the feasibility of complete de novo genome assembly of all dominant
strains from low-complexity NWCs based on whole metagenomics shotgun sequencing data…

… to three state of the art short read assembly programs in terms of the number of … of a de
novo assembly using no external information. The comparison is conducted on 8 metagenomic …

… The low coverage of most species means de novo assembly is unlikely unless the genome
in question is relatively small, and instead we are reliant on reference genomes or gene …