Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data (Q30970597)

15 August 2017

Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data (English)

1 reference

15 August 2017

Gur Yaari

5

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author name string

Namita T Gupta

1

1 reference

15 August 2017

Jason A Vander Heiden

2

1 reference

15 August 2017

Mohamed Uduman

3

1 reference

15 August 2017

Daniel Gadala-Maria

4

1 reference

15 August 2017

Steven H Kleinstein

6

1 reference

15 August 2017

language of work or name

English

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publication date

10 June 2015

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15 August 2017

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15 August 2017

31

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15 August 2017

20

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15 August 2017

3356-3358

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Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles

15 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

Influence of seasonal exposure to grass pollen on local and peripheral blood IgE repertoires in patients with allergic rhinitis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

Integrating B cell lineage information into statistical tests for detecting selection in Ig sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

Immunosequencing: applications of immune repertoire deep sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

IgBLAST: an immunoglobulin variable domain sequence analysis tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

IMGT(®) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

Quantifying selection in high-throughput Immunoglobulin sequencing data sets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

Vaccination-induced changes in human B-cell repertoire and pneumococcal IgM and IgA antibody at different ages.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

Clustering-based identification of clonally-related immunoglobulin gene sequence sets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

Estimating Hypermutation Rates from Clonal Tree Data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

Generation of antibody diversity in the immune response of BALB/c mice to influenza virus hemagglutinin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

IgTree: creating Immunoglobulin variable region gene lineage trees.

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV359

Diversity and Evenness: A Unifying Notation and Its Consequences

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV359

Di- and trinucleotide target preferences of somatic mutagenesis in normal and autoreactive B cells

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793929

10.1093/BIOINFORMATICS/BTV359

25 November 2018

Identifiers

DOI

1 reference

journals/bioinformatics/GuptaHUGYK15

15 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

15 August 2017

PubMed publication ID

26069265

1 reference