Nitrogen Doping and CO2 Adsorption On Graphene A Thermodynamical Study
Nitrogen Doping and CO2 Adsorption On Graphene A Thermodynamical Study
Nitrogen Doping and CO2 Adsorption On Graphene A Thermodynamical Study
(Received 19 January 2018; revised manuscript received 9 April 2018; published 23 April 2018)
Nitrogen-doped graphene has raised considerable interest for its possible applications as carbon dioxide
adsorber and catalyst. In this paper, we provide a theoretical study of graphitic, pyridiniclike and pyrroliclike
nitrogen defects in a free-standing graphene layer, focusing on their formation and adsorption behavior. Using
density functional theory and thermodynamics, we analyze the various defects, highlighting the great stability
of graphitic nitrogen in a wide temperature and pressure range. CO2 adsorption proves to be moderately
thermodynamically disfavored around standard conditions for the most stable nitrogen defects and slightly favored
for the more energetic ones. The combination of the results on defect stability and CO2 adsorption may open
interesting possibilities in the design of carbon-based materials with promising adsorption performances.
DOI: 10.1103/PhysRevB.97.155428
(e) (f) where ECtot is the total DFT energy and FCvib (T ) the free energy
of vibration of the pure graphene unit cell.
FIG. 1. Relaxed geometries of the nitrogen defects in graphene The chemical potential of the nitrogen atom
considered: (a) graphitic-N, (b) pyriN1, (c) pyriN2, (d) pyriN3, is obtained from the nitrogen gas molecule as
(e) pyriN4, and (f) pyrrolN1. Carbon atoms are shown in yellow, μN (T ,p) = 1/2[ENtot2 + ENZP2 + μN2 (T ,p)], where ENtot2
nitrogen atoms in blue. is the total electronic energy of the nitrogen molecule obtained
from a DFT calculation in a cubic cell with 20 Å side, at the
pyriN1 (b), pyriN2 (c), pyriN3 (d), pyriN4 (e), and pyrrolN1 point. ENZP2 is the zero-point energy of the nitrogen molecule,
(f) [25–28]. In each case the simulated system is an 8 × 8 which can be obtained from the nitrogen molecule normal
supercell with lattice vectors a = b = 19.66 Å, in agreement mode [35], while μN2 encodes the temperature and pressure
dependence of the chemical potential as
with the experimental results [29], and 15 Å of vacuum
in the c direction to ensure decoupling between periodic p
images. The DFT total energy calculations are performed with μN2 (T ,p) = H ◦ (T ) − H ◦ (0) − T S ◦ (T ) + kB T log ◦ ,
p
the Perdew-Burke-Ernzerhof (PBE) [30] exchange-correlation
(4)
functional and employing Rappe-Rabe-Kaxiras-Joannopoulos
ultrasoft pseudopotentials [31]. The wave function and charge where H ◦ and S ◦ are the nitrogen gas enthalpy and entropy
cutoffs are safely set to 50 Ry and 400 Ry, respectively, at standard pressure (p◦ = 1 bar), respectively, and can be
while the Brillouin zone sampling is performed on a 2 × 2 × 1 obtained from the NIST database [36].
Monkhorst-Pack mesh [32]. The final geometry for each defect,
reported in Fig. 1, is obtained with a full relaxation, after which B. Gibbs free energy of CO2 adsorption
the force on each atom is smaller than 0.01 eV/Å. Dispersion
interactions are taken into account by employing the DFT-D2 The Gibbs free energy of adsorption of CO2 is computed
method [33,34]. We perform spin-polarized calculations in for each defected layer introduced in the previous paragraph.
order to study the magnetic moments of the structures in exam. For each configuration, the adsorption geometry is obtained
f after fully relaxing the atoms in the supercell. In this study
The Gibbs free energy of formation GX (T ,p) at temper-
we focus on CO2 adsorption on the defect only and assume
ature T and pressure p, for each defect X can be obtained
the distance between defects is large enough to suppress any
as
adsorbate-adsorbate interaction. As a first approximation, the
f
GX = FXtot (T )−Fptot (T )−nC μC (T )−nN μN (T ,p)+pV f , Gibbs free energy of adsorption of CO2 on defect X can be
obtained as
(1)
GaX (T ,p) = EXtot∗ − EXtot + FCO
vib
∗ (T ) − μCO2 (T ,p), (5)
where FXtot and Fptot are the total Helmholtz free energies of 2
the defected and pristine layers, respectively. nC and nN are where EXtot∗ is the total electronic energy of the layer plus
the numbers of carbon and nitrogen atoms added (positive) or adsorbed CO2 , μCO2 is the chemical potential of CO2 in the gas
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vib f
phase, and FCO ∗ is the vibrational free energy of the molecule TABLE I. Formation energy at 0 K, E0 , formation energy at 0 K
2 f
while adsorbed on the defected layer. This can be obtained from neglecting zero-point energies, Ê0 and nitrogen-carbon bond lengths
a normal modes calculation letting only the adsorbed molecule for each defect considered. Referring to Fig. 1, for pyriN2 the first
vibrate, while keeping fixed the atoms in the layer. We shall value of lN−C refers to N1 the second to N2 . For pyriN4, the two values
analyze the assumptions and implications of Eq. (5) in Sec. IV. of lN−C are the distances N-C1 and N-C2 , respectively.
The chemical potential of the CO2 molecule in the gas f f
phase is obtained through the same strategy employed for the Defect E0 (eV) Ê0 (eV) lN−C (Å)
nitrogen molecule. However, it has been shown that the PBE graphitic-N 0.932 0.885 1.407
functional introduces a systematic error in the calculation of pyriN1 5.692 5.444 1.321
the total energy of the gas-phase CO2 molecule, which can be pyriN2 4.892 4.555 1.319/1.377
compensated by adding 0.13 eV to the PBE result [37]. pyriN3 3.841 3.417 1.332
It is then possible to have a first insight on the process pyriN4 4.401 3.729 1.346/1.323
of adsorption on the various defects by employing a simple pyrrolN1 9.174 8.926 1.462
Langmuir adsorption model [38–40] to study the amount of
adsorbate at equilibrium as a function of the temperature and
CO2 partial pressure. As mentioned, we assume independence f
between defects and consider adsorption only on the nitrogen The values of Ê0 are in good agreement with previous stud-
defect (not on nearby graphene carbon atoms), thus neglecting ies [18,20,45,46]. On the other hand, we find large differences
coverage effects in the adsorption process [7]. We can obtain with the values reported in Ref. [17], as already noticed in
the adsorption rate per defect as [41–44] Ref. [18] (cf. note 41 therein), that can be traced back to the
different DFT treatment (LDA in Ref. [17], GGA in the present
work) and to the different supercell size (4 × 4 in [17], 8 × 8 in
pA EXads
rX (T ,p) =
ads
exp − , (6) this work). It is worth underlining the difference between E0
f
2π mCO2 kB T kB T
f
and Ê0 which shows the impact of the vibrational contribution
where p is the CO2 partial pressure, A the area of the active on the formation energetics at 0 K. Indeed, the zero-point
surface where adsorption on defect X takes place, and EXads energies of the carbon and nitrogen atoms amount to around
is the energy barrier the particle must overcome to adsorb on 0.15 eV.
the surface. As we shall see in the following section, dealing With Eq. (2) it is then possible to compute the Gibbs free
only with physisorption allows us to simplify Eq. (6) by taking energy of formation for each defect. In Fig. 2 we show the
EXads = 0. In our study we assume as active surface a 4 × 4 f
dependence of GX on μN ≡ 1/2μN2 , defined in Eq. (4),
subcell containing the defect, with side l = 7.4 Å. From Eq. (6) at T = 298.15 K. It can be noticed that up to μN 1 eV the
we can obtain the desorption rate as graphitic-N defect shows the lowest free energy of formation,
while above this threshold the most stable configuration is
GaX (T ,p) given by pyriN4. This illustrates the possibility, in principle,
rX (T ,p) = rX (T ,p) exp
des ads
, (7)
kB T of modifying the nitrogen defect configuration by varying
the nitrogen chemical potential [20]. However, at standard
where GaX (T ,p) is computed with Eq. (5). By defining
temperature T = 298.15 K, μN = 1 eV is reached at p
the coverage θ as the ratio between the number of adsorbed
1040 atm (see upper scale in Fig. 2), which makes it impossible
particles and the number of available sites, at equilibrium we
to achieve this result in practice. At lower values of μN
get the simple Langmuir isotherm relation
we can notice various crossovers between more energetic
rXads (T ,p) defects. In particular, moving around p 1 atm, the Gibbs
θ (T ,p) = . (8) free energies of pyriN3 and pyriN4 cross each other.
rX (T ,p) + rXdes (T ,p)
ads
The temperature dependence of the Gibbs free energies
This gives a rough estimation of the adsorption behavior of the of formation for each defect is shown in Fig. 3 at different
N defects in terms of the fraction of available sites occupied
by adsorbates.
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NITROGEN DOPING AND CO2 ADSORPTION ON … PHYSICAL REVIEW B 97, 155428 (2018)
FIG. 4. Relaxed geometries of CO2 adsorption on nitrogen defects in graphene. Oxygen atoms are shown in red. For each panel (a) to (f)
the left picture shows the simulated supercell from the top, while the right one from the side. The orientation is shown by the reference frame
in the bottom left of each picture.
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[1] J. Wang, L. Huang, R. Yang, Z. Zhang, J. Wu, Y. Gao, Q. Wang, [4] W. Li, B. Herkt, M. Seredych, and T. J. Bandosz, Appl. Catal.,
D. O’Hare, and Z. Zhong, Energy Environ. Sci. 7, 3478 (2014). B 207, 195 (2017).
[2] X. Mao and T. A. Hatton, Ind. Eng. Chem. Res. 54, 4033 [5] W. Li, M. Seredych, E. Rodríguez-Castellón, and T. J. Bandosz,
(2015). ChemSusChem 9, 606 (2016).
[3] J. Wu, S. Ma, J. Sun, J. Gold, C. Tiwary, B. Kim, L. Zhu, N. [6] Y. Song, R. Peng, D. K. Hensley, P. V. Bonnesen, L. Liang, Z.
Chopra, I. Odeh, R. Vajtai, A. Yu, R. Luo, J. Lou, G. Ding, P. Wu, H. M. Meyer, M. Chi, C. Ma, B. G. Sumpter, and A. J.
Kenis, and P. Ajayan, Nat. Commun. 7, 13869 (2016). Rondinone, ChemistrySelect 1, 6055 (2016).
155428-6
NITROGEN DOPING AND CO2 ADSORPTION ON … PHYSICAL REVIEW B 97, 155428 (2018)
[7] K. Takeuchi, S. Yamamoto, Y. Hamamoto, Y. Shiozawa, K. [25] L. S. Panchakarla, K. S. Subrahmanyam, S. K. Saha, A. Govin-
Tashima, H. Fukidome, T. Koitaya, K. Mukai, S. Yoshimoto, daraj, H. R. Krishnamurthy, U. V. Waghmare, and C. N. R. Rao,
M. Suemitsu, Y. Morikawa, J. Yoshinobu, and I. Matsuda, Adv. Mater. 21, 4726 (2009).
J. Phys. Chem. C 121, 2807 (2017). [26] L.-S. Zhang, X.-Q. Liang, W.-G. Song, and Z.-Y. Wu, Phys.
[8] A. Ghosh, K. S. Subrahmanyam, K. S. Krishna, S. Datta, A. Chem. Chem. Phys. 12, 12055 (2010).
Govindaraj, S. K. Pati, and C. N. R. Rao, J. Phys. Chem. C 112, [27] L. Zhao, R. He, K. T. Rim, T. Schiros, K. S. Kim, H. Zhou,
15704 (2008). C. Gutiérrez, S. P. Chockalingam, C. J. Arguello, L. Pálová, D.
[9] J. Low, J. Yu, and W. Ho, J. Phys. Chem. Lett. 6, 4244 (2015). Nordlund, M. S. Hybertsen, D. R. Reichman, T. F. Heinz, P. Kim,
[10] D. C. B. Alves, R. Silva, D. Voiry, T. Asefa, and M. Chhowalla, A. Pinczuk, G. W. Flynn, and A. N. Pasupathy, Science 333, 999
Materials for Renewable and Sustainable Energy 4, 2 (2015). (2011).
[11] D. G. Hwang, E. Jeong, and S. G. Lee, Carbon letters 20, 81 [28] H. Gao, L. Song, W. Guo, L. Huang, D. Yang, F. Wang, Y. Zuo,
(2016). X. Fan, Z. Liu, W. Gao, R. Vajtai, K. Hackenberg, and P. M.
[12] J. Wu, M. Liu, P. P. Sharma, R. M. Yadav, L. Ma, Y. Yang, X. Ajayan, Carbon 50, 4476 (2012).
Zou, X.-D. Zhou, R. Vajtai, B. I. Yakobson, J. Lou, and P. M. [29] D. C. Elias, R. R. Nair, T. M. G. Mohiuddin, S. V. Morozov,
Ajayan, Nano Lett. 16, 466 (2016). P. Blake, M. P. Halsall, A. C. Ferrari, D. W. Boukhvalov, M. I.
[13] Y. Liu, J. Zhao, and Q. Cai, Phys. Chem. Chem. Phys. 18, 5491 Katsnelson, A. K. Geim, and K. S. Novoselov, Science 323, 610
(2016). (2009).
[14] G.-L. Chai and Z.-X. Guo, Chem. Sci. 7, 1268 (2016). [30] J. P. Perdew, K. Burke, and M. Ernzerhof, Phys. Rev. Lett. 77,
[15] H. He and Y. Jagvaral, Phys. Chem. Chem. Phys. 19, 11436 3865 (1996).
(2017). [31] A. M. Rappe, K. M. Rabe, E. Kaxiras, and J. D. Joannopoulos,
[16] H. Wang, Y. Chen, X. Hou, C. Ma, and T. Tan, Green Chem. 18, Phys. Rev. B 41, 1227 (1990).
3250 (2016). [32] H. J. Monkhorst and J. D. Pack, Phys. Rev. B 13, 5188
[17] Y. Fujimoto and S. Saito, Phys. Rev. B 84, 245446 (2011). (1976).
[18] Z. Hou, X. Wang, T. Ikeda, K. Terakura, M. Oshima, M.-a. [33] S. Grimme, J. Comput. Chem. 27, 1787 (2006).
Kakimoto, and S. Miyata, Phys. Rev. B 85, 165439 (2012). [34] V. Barone, M. Casarin, D. Forrer, M. Pavone, M. Sambi, and A.
[19] Z. Hou, X. Wang, T. Ikeda, K. Terakura, M. Oshima, and M.-a. Vittadini, J. Comput. Chem. 30, 934 (2009).
Kakimoto, Phys. Rev. B 87, 165401 (2013). [35] JANAF THERMOCHEMICAL TABLES, Anal. Chem. 61,
[20] Y. Jing and Z. Zhou, ACS Catalysis 5, 4309 (2015). 1327A (1989).
[21] K.-J. Lee and S.-J. Kim, Bulletin of the Korean Chemical Society [36] D. R. Burgess, NIST Chemistry WebBook, NIST
34, 3022 (2013). Standard Reference Database 10.18434/T4D303,
[22] M. Muruganathan, J. Sun, T. Imamura, and H. Mizuta, Nano http://webbook.nist.gov/chemistry.
Lett. 15, 8176 (2015). [37] A. A. Peterson, F. Abild-Pedersen, F. Studt, J. Rossmeisl, and
[23] P. Giannozzi, S. Baroni, N. Bonini, M. Calandra, R. Car, C. J. K. Norskov, Energy Environ. Sci. 3, 1311 (2010).
Cavazzoni, D. Ceresoli, G. L. Chiarotti, M. Cococcioni, I. [38] I. Langmuir, J. Franklin Inst. 183, 102 (1917).
Dabo, A. D. Corso, S. de Gironcoli, S. Fabris, G. Fratesi, R. [39] I. Langmuir, Proc. Natl. Acad. Sci. USA 3, 251 (1917).
Gebauer, U. Gerstmann, C. Gougoussis, A. Kokalj, M. Lazzeri, [40] I. Langmuir, J. Am. Chem. Soc. 40, 1361 (1918).
L. Martin-Samos, N. Marzari, F. Mauri, R. Mazzarello, S. [41] K. Reuter and M. Scheffler, Phys. Rev. B 73, 045433 (2006).
Paolini, A. Pasquarello, L. Paulatto, C. Sbraccia, S. Scandolo, [42] M. Karikorpi, S. Holloway, N. Henriksen, and J. Nørskov, Surf.
G. Sclauzero, A. P. Seitsonen, A. Smogunov, P. Umari, and R. Sci. 179, L41 (1987).
M. Wentzcovitch, J. Phys.: Condens. Matter 21, 395502 (2009). [43] G. R. Darling and S. Holloway, Rep. Prog. Phys. 58, 1595
[24] P. Giannozzi, O. Andreussi, T. Brumme, O. Bunau, M. B. (1995).
Nardelli, M. Calandra, R. Car, C. Cavazzoni, D. Ceresoli, M. [44] A. Groß, Surf. Sci. Rep. 32, 291 (1998).
Cococcioni, N. Colonna, I. Carnimeo, A. D. Corso, S. de [45] Y.-X. Yu, Phys. Chem. Chem. Phys. 15, 16819 (2013).
Gironcoli, P. Delugas, R. A. D. Jr, A. Ferretti, A. Floris, G. [46] S. Kattel, P. Atanassov, and B. Kiefer, J. Phys. Chem. C 116,
Fratesi, G. Fugallo, R. Gebauer, U. Gerstmann, F. Giustino, T. 8161 (2012).
Gorni, J. Jia, M. Kawamura, H.-Y. Ko, A. Kokalj, E. Küçükbenli, [47] D. Usachov, A. Fedorov, O. Vilkov, B. Senkovskiy, V. K.
M. Lazzeri, M. Marsili, N. Marzari, F. Mauri, N. L. Nguyen, Adamchuk, L. V. Yashina, A. A. Volykhov, M. Farjam, N. I.
H.-V. Nguyen, A. O. de-la Roza, L. Paulatto, S. Poncé, D. Rocca, Verbitskiy, A. Grüneis, C. Laubschat, and D. V. Vyalikh, Nano
R. Sabatini, B. Santra, M. Schlipf, A. P. Seitsonen, A. Smogunov, Lett. 14, 4982 (2014).
I. Timrov, T. Thonhauser, P. Umari, N. Vast, X. Wu, and S. [48] D. W. Blaylock, T. Ogura, W. H. Green, and G. J. O. Beran,
Baroni, J. Phys.: Condens. Matter 29, 465901 (2017). J. Phys. Chem. C 113, 4898 (2009).
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