Waters Aquity
Waters Aquity
System Guide
Copyright notice
© 2018 WATERS CORPORATION. PRINTED IN THE UNITED STATES OF AMERICA AND IN
IRELAND. ALL RIGHTS RESERVED. THIS DOCUMENT OR PARTS THEREOF MAY NOT BE
REPRODUCED IN ANY FORM WITHOUT THE WRITTEN PERMISSION OF THE PUBLISHER.
The information in this document is subject to change without notice and should not be construed
as a commitment by Waters Corporation. Waters Corporation assumes no responsibility for any
errors that may appear in this document. This document is believed to be complete and accurate
at the time of publication. In no event shall Waters Corporation be liable for incidental or
consequential damages in connection with, or arising from, its use. For the most recent revision
of this document, consult the Waters website (waters.com).
Trademarks
ACQUITY® is a registered trademark of Waters Corporation.
TORX® is a registered trademark of Acument Intellectual Properties, LLC in the United States or
other countries.
TritonTM X-100 is a trademark of The Dow Chemical Company or an affiliated company of Dow.
Customer comments
Waters’ Customer Experience and Knowledge Management organization invites you to report any
errors that you encounter in this document or to suggest ideas for otherwise improving it. Help us
better understand what you expect from our documentation so that we can continuously improve
its accuracy and usability.
Contacting Waters
Contact Waters with enhancement requests or technical questions regarding the use,
transportation, removal, or disposal of any Waters product. You can reach us via the Internet,
telephone, fax, or conventional mail.
Internet The Waters Web site includes contact information for Waters locations
worldwide.
Visit www.waters.com
Telephone and fax From the USA or Canada, phone 800-252-4752, or fax 508-872-1990.
For other locations worldwide, phone and fax numbers appear in the
Waters Web site.
Safety considerations
Some reagents and samples used with Waters instruments and devices can pose chemical,
biological, or radiological hazards (or any combination thereof). You must know the potentially
hazardous effects of all substances you work with. Always follow Good Laboratory Practice
(GLP), and consult your organization’s standard operating procedures as well as your local
requirements for safety.
System height
Warning: To avoid injury, do not stack modules, including the solvent tray and rails,
higher than one meter (39.4 inches) above the bench top.
Warning: To avoid spinal and muscular injury, do not attempt to lift a system module
without assistance.
Warning: To avoid crushing your fingers beneath or between modules, use extreme
care when installing a module in the system stack.
Documentation needs to be consulted in all cases where the symbol is used to find out the
nature of the potential hazard and any actions which have to be taken.
Warning: To avoid injury from electrical shock or fire, and damage to the equipment, follow
these guidelines:
• Do not place objects filled with liquid, such as solvent bottles, on top of the workstation or
ancillary equipment.
Safety advisories
Consult the "Safety advisories" appendix in this publication for a comprehensive list of warning
advisories and notices.
Applicable symbols
The following symbols can be present on the device, system, or packaging.
Symbol Definition
Manufacturer
Date of manufacture
or
Confirms that a manufactured product complies with all applicable United
States and Canadian safety requirements
Alternating current
Electrical and electronic equipment with this symbol may contain
hazardous substances and should not be disposed of as general waste.
For compliance with the Waste Electrical and Electronic Equipment
Directive (WEEE) 2012/19/EU, contact Waters Corporation for the correct
disposal and recycling instructions.
Serial number
Intended use
Waters designed this system to perform liquid chromatography separations in these
environments:
• Chemical materials
• Environmental
• Food safety
Calibrating
To calibrate LC systems, adopt acceptable calibration methods using at least five standards to
generate a standard curve. The concentration range for standards must include the entire range
of QC samples, typical specimens, and atypical specimens.
When calibrating mass spectrometers, consult the calibration section of the operator’s guide for
the instrument you are calibrating. In cases where an overview and maintenance guide, not an
operator’s guide, accompanies the instrument, consult the system guide or the instrument’s
online Help system for calibration instructions.
Quality control
Routinely run three QC samples that represent subnormal, normal, and above-normal levels of a
compound. If sample trays are the same or very similar, vary the location of the QC samples in
the trays. Ensure that QC sample results fall within an acceptable range, and evaluate precision
from day to day and run to run. Data collected when QC samples are out of range might not be
valid. Do not report these data until you are certain that the instrument performs satisfactorily.
EMC considerations
Group 1 products apply to intentionally generated and/or used conductively coupled radio-
frequency energy that is necessary for the internal functioning of the equipment.
Class B products are suitable for use in both commercial and residential locations and can be
directly connected to a low voltage, power-supply network.
EC authorized representative
Trademarks............................................................................................................................................ ii
Customer comments..............................................................................................................................iii
Safety considerations............................................................................................................................ iv
System height................................................................................................................................. iv
Safety hazard symbol notice .......................................................................................................... iv
Power cord replacement hazard..................................................................................................... iv
High voltage hazard......................................................................................................................... v
Bottle placement prohibition ............................................................................................................ v
FCC radiation emissions notice....................................................................................................... v
Electrical power safety notice .......................................................................................................... v
Equipment misuse notice ................................................................................................................ v
Safety advisories ............................................................................................................................. v
EMC considerations..............................................................................................................................vii
Canada spectrum management emissions notice.........................................................................viii
ISM classification: ISM group 1 class B.........................................................................................viii
1.3 System components...................................................................................................................... 17
1.3.1 Quaternary solvent manager (QSM).................................................................................... 19
2 Performance optimization........................................................................................25
2.2 Dispersion ..................................................................................................................................... 27
2.3 Carryover ...................................................................................................................................... 27
2.5 Preventing leaks............................................................................................................................ 28
2.5.1 Installation recommendations for fittings ............................................................................. 29
2.7 Sample preparation....................................................................................................................... 42
2.7.1 Particulates .......................................................................................................................... 42
2.7.2 Matching sample diluents .................................................................................................... 42
2.9 Solvent recommendations............................................................................................................. 46
4.3 Spare parts.................................................................................................................................... 68
5.4 Waste-tubing connections............................................................................................................. 72
B.2 Notices..........................................................................................................................................82
The ACQUITY UPLC H-Class Series system was designed to support HPLC, UHPLC, and UPLC
methods. The low dispersion of the system allows you to maximize chromatographic resolution
for the most challenging and complex separations. Software and hardware tools enable simplified
transfer of methods and support automated method development.
UPLC technology is based on columns packed with 1.7 µm-diameter, spherical particles coupled
with low dispersion systems, allowing you to realize the full separation potential of these highly
efficient columns.
It is apparent from the figure, above, that using 1.7-µm particles achieves higher efficiency that
persists as flow rate increases (lower HETP indicates higher efficiency). When operating in this
area of the plot, the peak capacity and the speed of a separation can set limits well beyond those
of conventional HPLC technology.
The figure above compares two separations, one using HPLC with a column packed with 5 µm
particles, and the other using UPLC with a column packed with 1.7 µm particles. The
improvements in both resolution and the speed of analysis are apparent in the UPLC
chromatogram. Each separation was performed on a 2.1 × 50 mm column. Chromatographic
conditions for the separations were identical, except for the flow rate, which was scaled based on
particle size.
• Flexible column management options to support different column lengths and automated
switching of up to six columns in independent temperature zones
The Gradient Smart Start feature adjusts when an injection is made relative to when it starts. In
this way, when you transfer methods, the feature compensates for differences in dwell volume
between chromatographic systems. Moreover, it automatically coordinates all pre-injection
operations, minimizing delays that would increase the overall cycle time. In doing so, the feature
makes it possible to begin gradient operation before or during the sample manager's pre-injection
functions, resulting in significant time savings.
Tip: The Wash Plungers function is not available when the module is operating.
Example: If a first injection uses line D1 and a second injection uses line D2, the solvent
manager primes line D2 between the first and second injections.
Tip: The default value is set to support rigid, HPLC and UPLC column particles. For pressure
sensitive columns (such as gel columns), the flow ramping should be adjusted.
See also:
• Auto•Blend Plus Technology for Ion Exchange, Size Exclusion, and Reversed-phase
Chromatography, included on the system documentation media.
• The Auto•Blend Plus videos on the Support tab on the Waters Auto•Blend Plus page.
Detector
Column heater
Sample manager
Solvent manager
The system includes a solvent manager, sample manager, column heater, detector (tunable
ultraviolet, photodiode array, evaporative light scattering, fluorescent, conductivity, refractive
index, or mass spectrometry), and an ACQUITY UPLC column.
Note: An optional 6-solvent selection valve can be added to the QSM line D for increased
solvent flexibility.
Note: An optional degasser vent line extension exists for applications requiring longer tubing
lengths. For more information, contact your local Waters distributor.
The SM-FTN also features several advanced sample conditioning features such as dilution, auto-
addition, and mixing, as well as load-ahead capabilities to reduce inject-to-inject cycle times.
Notice:
• Do not leave buffers stored in the system.
• Flush all flow paths, including the needle wash, with plenty of non-buffered solvent
before shutting down the system.
• For extended shutdown periods (longer than 24 hours), use 10% to 20% methanol
in water.
• Use of buffers can cause salt build-up on the needle and wash port, which can
require periodic cleaning.
Notes:
• Purge solvent must be miscible with the needle wash solvent.
The CH-A heats to any temperature from 20 ºC (or a minimum of 5 ºC above ambient
temperature) to 90 ºC. An active preheating device heats the incoming solvent before it enters the
column. The CH-A can accommodate columns up to 4.6 mm I.D. and up to 150 mm length.
Tips:
• Active preheating is the default configuration for the system.
• An optional, passive, column stabilizer is available for existing chromatographic methods not
suitable for active preheating.
The column manager offers a waste channel as well as a bypass channel H and automated,
programmable switching between columns, for methods development.
You can configure the column manager to work with as many as two column manager auxiliary
modules, in addition to the base unit. The column manager auxiliary modules are controlled by
the column manager and operate in the same temperature range. Each of the two column
troughs can accommodate one column of up to 150 mm in length with a pre-column filter, or two
columns up to 500 mm in length without pre-column filters.
Note: A system configured with a column manager base unit (and no additional CM-AUX) can
accommodate as many as four columns (50-mm); a system with a column manager base unit and
one CM-AUX module can accommodate as many as four long columns; a system with a column
The switch box is mounted to the rear of the SM-FTN. The SM-FTN interconnect cable is
connected to the sample manager (SM) port of the switch box, the CH-A interconnect cable is
connected to the CH-A port, and either the CH-30A or the 30-cm CHC interconnect cable is
connected to the 30-cm port.
For complete instructions on installing the Column Module Switch Box, see ACQUITY UPLC
Column Heater-Active Overview and Maintenance Guide on your documentation media, or at
Waters.com, for more details.
The sample organizer stores multiple microtiter or vial plates and transfers them to and from the
sample manager. This automates processing and increases throughput.
The sample organizer’s storage shelf compartment can hold a selection of ANSI plates, which
you load into the organizer through a large, swing-open front door. Heaters and coolers thermally
condition the shelf compartment and together with the sample manager’s heater/cooler, maintain
the temperature at a set point determined by the user.
Note: The ACQUITY FlexCart is not supported with the ACQUITY QDa detector or any
ACQUITY UPLC H-Class Series system with dual detection (split-stack configurations).
For more information on installing this extension loop, see Post-Injection Volume Kit Instructions.
1.3.9 Detection
The detectors compatible with your system detect and quantify concentrations of sample analyte.
The system accommodates these detectors:
• Fluorescence (FLR)
• ACQUITY QDa
Although the system works with any analytical column, specially designed ACQUITY UPLC
columns maximize its high-pressure capabilities. Compared with traditional HPLC columns,
ACQUITY UPLC columns deliver superior resolution and sensitivity in the same run time or
equivalent resolution, greater sensitivity, and faster run times.
• The name of the sample set (or sample list) run on the column.
• The highest pressure that the column has experienced (and the date).
• The highest temperature the column has experienced (and the date).
In addition to the variable column usage data, the eCord column chip also stores fixed column
manufacturing data, including:
• certificate of analysis.
• QC test data.
When you attach the column's eCord fob to the receptacle on the column compartment, the chip
automatically records and stores system information. You need take no further action.
• ACQUITY UPLC Quaternary Solvent Manager PLUS Series Overview and Maintenance
Guide
• ACQUITY UPLC Sample Manager - Flow Through Needle PLUS Series Overview and
Maintenance Guide
• ACQUITY UPLC Column Manager - Active and Column Manager - Auxiliary Overview and
Maintenance Guide
• ACQUITY Photodiode Array Detector with TaperSlit Overview and Maintenance Guide
• Auto•Blend Plus Technology for Ion Exchange, Size Exclusion, and Reversed-phase
Chromatography
Visit Waters.com to find more information and to join the ACQUITY UPLC online community,
where you can:
• Share information with and ask questions of ACQUITY UPLC experts and scientists.
• Access ACQUITY UPLC publications and user experiences from around the globe.
ACQUITY UPLC H-Class Series chromatography requires optimum performance from the sample
manager because sample dispersion is more evident when using smaller columns. The reduction
in chromatographic run time also makes efficient management of cycle time essential.
When performing fast UPLC analyses, a peak of interest can be less than 0.5 seconds in width.
Waters recommends a sampling rate that will generate between 25 and 50 points across the
narrowest integrated peak in the separation in order to ensure repeatable quantification and while
maximizing sensitivity. Based on the van Deemter equation, the optimal linear velocity for 1.7 µm
columns will be higher than that on a 5 µm column. The table below offers optimal flow rate
conditions for ACQUITY UPLC columns under both isocratic and gradient conditions. The values
provided are approximations, and optimum performance for your molecule or separation can
occur at a different flow rate and/or pressure.
• Start gradients that include an organic component (0.1%, for example) to provide more
consistent and predictable gradient formation than when you start with 0% organic.
• Ensure that gradients include an organic component (0.1%, for example) to start, to provide
more consistent and predictable.
• Use the Load Ahead option when you desire a shorter cycle time.
Prime properly
• Prime solvent lines during system start-up.
• Keep the seal wash line and all solvent lines primed.
• Place the waste container below the system stack to permit gravity flow.
• Ensure that the waste tube does not crimp or bend. A crimp or bend can impede flow to the
waste container.
• Ensure that the exit of the waste tube is not immersed in waste solvent.
• If necessary, shorten the tube so that no portion of it drops below the top of the waste
container.
• Flush buffers from the system, with aqueous solvent, if you keep the system idle for extended
periods (longer than 24 hours). Use 10 to 20% methanol in water as a “storage” solvent.
Prime the sample manager with purge solvent for a minimum of 10 cycles.
• Running continuously with salt concentrations higher than 1M can result in a need to change
pump seals more frequently than the scheduled PM. To help increase seal life and prevent
salt crystal buildup on the pump seals, flush the pump, high salt line, and reservoir
periodically. Salt concentration, flow rate, and other factors can affect the frequency of flush
procedures. Some applications can require weekly flushing.
2.2 Dispersion
UPLC systems and autosamplers exhibit low dispersion—a fixed instrument characteristic
measured by the extent of peak broadening that occurs because of the system design.
Small particle chromatography uses small, high-efficiency columns. A typical 2.1 × 50 mm UPLC
column has an approximate 174-µL volume, compared with 2.5 mL for a typical 4.6 × 150 mm
HPLC column. The smaller column and particle size require a system whose low dispersion
reduces dilution and band broadening, thus maintaining the peak shape, height, and sensitivity
produced by the high-efficiency column.
An ACQUITY UPLC H-Class Series system typically exhibits a bandspread (5σ) of ≤12 µL,
depending on system configuration. A typical HPLC system can exhibit a bandspread between 35
µL and 50 µL. Because of the dispersion differences, a band experiences a threefold increase in
dilution, compared with an ACQUITY UPLC H-Class Series system.
As a result, UPLC peak concentrations are higher than HPLC concentrations. Because solubility
effects are more apparent in low-dispersion, high-pressure systems, it is important to adjust
column load appropriately.
2.3 Carryover
You observe carryover in chromatographic systems when a previously injected analyte appears
as a peak in the chromatogram of subsequent samples. Carryover tends to occur when a small
amount of analyte remains in the system after a sample is injected. You can measure carryover
by observing analyte peaks that appear when you run a blank sample immediately after an
analytical sample.
The hydrophobicity and solubility of samples as well as cleanliness during sample preparation are
additional factors to consider when trying to minimize carryover, as is contamination from sample
preparation tools.
Tips:
• Use additional valve cycle timed events (actuate the valve) if you suspect that sample residue
in the valve is causing carryover problems.
• Test your sample in the strong wash solvent to make sure that the strong wash solvent does
not cause either the analyte or the matrix to precipitate.
• Do not use the Load Ahead or Loop Offline options when you are troubleshooting carryover
problems, as the shorter cycle times will prevent effective troubleshooting.
The sample manager has a load-ahead option that can help decrease cycle time. This option
instructs the sample manager to aspirate the next sample while the current sample is running.
The Loop Offline option on the sample manager reduces the impact of delay volume on cycle
time by taking the needle and extension loop offline before the gradient reaches the injection
valve and after the sample transfers to the injection port.
Setting an appropriate syringe draw rate can also help reduce cycle time. By default, the system
uses feedback information from a pressure transducer to optimize the syringe draw rate for
maximum throughput and performance.
Warning: Observe Good Laboratory Practice (GLP) at all times, particularly when
working with hazardous materials. Consult the Material Safety Data Sheets regarding
the solvents you use. Additionally, consult the safety representative for your
organization regarding its protocols for handling such materials.
Recommendations:
• To prevent band spreading, ensure that the tubing is fully bottomed in its connection port
before tightening the compression screw.
• For easier accessibility, use long compression screws to attach tubes to the injector and vent
valve.
• Perform the solvent manager leak test whenever you replace or loosen fittings during
maintenance (see the console online Help).
• Whenever you loosen fittings during maintenance, examine for cracks, stripped threads, and
deformations.
• Protective eyewear
• 1/4-inch open-end wrench – for tightening or loosening stainless steel (gold-plated) fittings
with two-piece ferrules
• Column gripping tool – for holding the column while tightening or loosening the dual-threaded
fitting
• Permanent marker
4. Rotate the compression screw, clockwise, into the connection port until the screw is finger-
tight.
5. Using a permanent marker, mark the compression screw at the 12-o’clock position.
7. Ensure that the tubing makes contact with the bottom of the connection port, and use the
1/4-inch open-end wrench to rotate the compression screw clockwise 3/4-turn until the two
marks line up.
First-use tightening:
First use
Long flats
Compression screw
Tighten the fitting finger-tight plus an additional 3/4-turn using a 1/4-inch open-end wrench. For
detailed instructions about assembling new fittings, see Assembling new fittings.
Tip: To prevent band spreading, ensure that the tubing is fully bottomed in the connection port
before you tighten the compression screw.
Reinstalled
Compression screw
Reinstalled tightening
2.5.1.3 Stainless steel (gold-plated) fitting with short flats and 2-piece stainless steel
ferrule (V-detail)
First use
Short flats
Compression screw
Tip: To prevent band spreading, ensure that the tubing is fully bottomed in the connection port
before you tighten the compression screw.
Reinstalled
Short flats
Compression screw
Tighten the fitting finger-tight plus as much as an additional 1/6-turn using a 1/4-inch open-end
wrench.
Reinstalled tightening
Compression screw
Ferrule
Tighten the fitting finger-tight.
Compression screw
2-piece ferrule
Tighten the fitting finger-tight.
Compression screw
Lock ring
Ferrule
2.5.1.7 Short 1/4-28 fitting with flangeless ferrule and stainless steel lock ring installed
on 1/16-inch OD tubing
Compression screw
Lock ring
Ferrule
2.5.1.8 5/16-24 fitting with filter and stainless steel lock ring
Compression screw
Lock ring
2.5.1.9 PEEK fitting with PEEK ferrule and stainless steel lock ring
Compression screw
Lock ring
Ferrule
Tighten the fitting finger-tight.
Compression screw
Tighten the fitting finger-tight.
Tips:
• You can also use the column gripping tool when tightening this fitting.
• To prevent band spreading, ensure that the tubing is fully bottomed in the connection port
before tightening the fitting.
2. Slide the compression fitting together with the ferrule into the inlet of the column (or the in-
line filter).
Important: To prevent band spreading, ensure that the tubing bottoms in the connection
port before you tighten the compression fitting.
3. Finger-tighten the compression fitting into the inlet of the column (or the in-line filter).
Compression fitting
Column
Tip: If you are operating the system at, or close to, its maximum system operating
pressure limit and the fitting is a hex, use the 1/2-inch open-end wrench to tighten the
compression fitting an additional 1/8- to 1/6-turn.
• Always loosen the locking cap nut before reconnecting the fitting.
Warning: To prevent burn injuries, set the column temperature to Off, and then allow
the column compartment and its components to cool for 60 minutes before touching
them. Monitor the column compartment's internal temperature to ensure that all
components are cool.
Warning: To avoid personal contamination with biologically hazardous, toxic, and corrosive
materials, wear chemical-resistant, powder-free gloves when performing this procedure.
Warning: To avoid eye injury, use eye protection when performing this procedure.
• Protective eyewear
• Replacement ferrule
Tubing
Note: If the assembly contains a captive ferrule, the ferrule remains locked in the fitting.
3. If the assembly contains a captive ferrule, remove the ferrule from the fitting.
6. Slide the #1 knurled compression fitting and ferrule onto the tubing.
Figure 2–9: Sliding fitting and ferrule onto tubing
Tubing
For the greatest flexibility in method development, Waters recommends configuring the system
with the column manager and optional Auxillary column managers as well as installing the
optional 6-solvent select valve in the QSM. Using the standard Auto•Blend Plus technology will
automate the preparation of any pH specific mobile phase from pure solvents for easier method
development.
2.7.1 Particulates
Waters recommends filtering all samples with particulates through a 0.2 µm sample filter or
installing a column pre-filter. The small column frit size (0.2 µm) can become blocked more easily
than larger HPLC column frits (2.0 µm). As a result, particle-free mobile phase solvents and
sample solutions are essential for UPLC analysis. See General guidelines for recommendations
on choosing and handling solvents.
When transferring methods from one system to another, you must define and characterize the
original method well. Doing so includes noting information about column dimensions, dwell
volumes, configurations, injection volumes, analyte molecular weights, and gradient profiles. You
must calculate various measurements of both systems, using the same method, to ensure a
successful transfer. Using the Waters ACQUITY UPLC Columns Calculator ensures the best
results for transferring the LC method from HPLC to UPLC or UPLC to HPLC.
See also: The ACQUITY console online Help for additional details.
• Pre-injector volume, specified in the instrument method, enables the gradient to start before
the injection is triggered. Use a pre-injection volume to maintain a constant dwell volume to
column volume ratio on both systems.
• For a target system, with a smaller volume, use an isocratic hold to account for the dwell
volume differences.
• Active preheating is the default configuration for the ACQUITY UPLC H-Class Series system.
An optional, passive, column stabilizer is available for existing chromatographic methods not
suitable for active preheating.
• Select the column with the most similar selectivity using the Interactive Waters Reversed
Phase Column Selectivity Chart, which you can download from Waters.com, or by double-
clicking the shortcut icon on the desktop. The Waters columns are highlighted (larger white
dots).
• For the initial evaluation, keep conditions as consistent as possible. You can optimize the
separation later.
• Match the ratio of column length to particle size (L/dp), the measure of resolving power.
• Maintain the number of gradient column volumes for each step of the gradient, to preserve its
separation power.
• Calculate appropriate gradient hold volumes at initial gradient conditions when going from a
larger system volume to a smaller one.
Because the dwell volumes of the ACQUITY UPLC H-Class Series system are far smaller than
those of a conventional HPLC system, often a gradient hold is required.
Identical chemistries are available in UPLC and HPLC columns simplifying their selection and
allowing for a simple method transfer from the ACQUITY UPLC H-Class Series system to
standard analytical HPLC.
Finally, note that the chromatographic conditions provided by the calculator serve as a starting
point. You can further optimize these conditions based on the requirements for the separation.
Tip: When you power-on a new system for the first time, if it has leak sensors, they default to
disabled status. Subsequently, they retain their last specified setting. To enable or disable leak
sensors, see "Enabling the leak sensors".
Result: The following start-up tests run: CPU board, memory (RAM and ROM), external
communication system (Ethernet), and clock. If the start-up tests indicate a malfunction,
contact your local Waters representative.
2. Power-on the sample manager and then the solvent manager, by pressing the power
switch on the top, left-hand side of each device's door.
Note: The system's communications occur at an internal Ethernet switch in the sample
manager. This module must be powered-on for any other system modules to communicate
with the data system.
3. After power LEDs on the solvent manager and sample manager glow steady green, power-
on each detector by pressing the power switch on the detector's top, left-hand side.
Tip: Power-on detectors only when the flow cell is wetted, to prevent initialization errors.
See also: Monitoring module LEDs
4. Launch the chromatography data system software, and open the system.
See also: The console online Help for additional information on how to perform these tasks.
Alternative: Right-click the control panel for any module, and select Launch Console
from the menu that appears.
Alternative: Right-click the control panel for any module, and select Launch Console
from the menu that appears.
2. From the My Work tab, select Instrument Systems, and then double-click on the device
that you want to monitor.
Alternative: Launch the System Console from the System Control Panel menu.
Result: A control panel for the selected device appears.
Recommendation: If you are introducing new solvents, prime them at 4 mL/min for seven
minutes. Alternatively, prime the solvents at 4 mL/min for three minutes. Ensure that sufficient
quantities of solvent are available for priming.
Tip: In the console, you can select the Startup System feature to prime all solvents and to
specify the solvent composition, flow rate, column and sample temperatures, and needle
characterization for your next system start-up. For details, see the console online Help.
Note: To provide adequate ventilation, the sample manager's fans run continuously, even when
the power switch is in the "off" position. These fans switch off only when you disconnect the
power cable from the ac wall outlet or rear panel.
Steady red A failure is preventing operation. If, after you cycle power to the solvent
manager, the LED remains red, report the problem to Waters Technical
Service.
Unlit If the detector is equipped with a lamp, the lamp is extinguished. If the
detector is not equipped with a lamp, the detector is idle.
Steady green If the detector is equipped with a lamp, the lamp is ignited. If the detector is
not equipped with a lamp, the detector is operating normally.
Flashing green The detector is initializing or calibrating.
Flashing red An error stopped the detector's operation. Refer to the console log for
information about the error.
Steady red A failure is preventing the detector from operating. If, after you cycle power to
the detector, the LED remains red, report the problem to Waters Technical
Service.
2. To enable the leak sensor for an individual module, click the status on the left-hand side of
the module’s description.
• When Empower software controls the system, the control panels appear at the bottom of the
Run Samples window.
• When MassLynx software controls the system, the control panels appear on the Additional
Status tab of the Inlet Editor window.
• When UNIFI software controls the system, the control panels appear in the right-hand utility
pane of the main window whenever a system is selected for the System Console or data
analysis activities.
You can update a parameter set point directly from a control panel, providing sample analysis is
not running. When the parameter value is underscored and appears in blue, sample analysis is
not running, and you can click the parameter value and specify a new value in the dialog box that
appears.
If Empower software controls the system, the column manager's control panel appears at the
bottom of the Run Samples window. If MassLynx software controls the system, the control panel
appears on the Additional Status tab of the Inlet Editor window.
You can edit the set point when the system is idle by clicking on the underlined value. You cannot
edit temperature set point and column selection while the system is running samples.
The following table describes the items in the column manager's control panel:
Run LED - Mirrors the run status LED on the column manager's front panel, unless
communications are interrupted.
Temperature set point - Displays the column compartment set point. When active
temperature control is disabled, this field displays "Off".
You can access these additional functions by right-clicking anywhere in the column manager
control panel.
You can edit these values when the system is idle by clicking the underlined value. You cannot
edit sample manager set points while the system is running samples.
Run LED – Mirrors the run status LED on the sample manager's front panel, unless
communications are interrupted.
Column compartment temperature set point – Displays the temperature set point for the
column compartment.
Sample compartment temperature set point – Displays the temperature set point for the
sample compartment.
You can access these additional functions by right-clicking anywhere in the sample manager
control panel.
You can edit these parameters when the system is idle by clicking the underlined value. You
cannot edit solvent manager parameters while the system is running samples.
Flow LED – Mirrors the flow status LED on the solvent manager's front panel, unless
communications are interrupted.
Flow rate – Displays the flow rate of solvent through all lines of the solvent manager.
Stop flow – When clicked, immediately stops all flow from the solvent manager.
Pressure Delta – The difference between the maximum and minimum pressures observed
during the previous minute of operation.
Solvent composition – Displays the percentage of solvent to be drawn from solvent lines
A through D. If you have the optional solvent selection valve, values for solvent lines D1
through D6 will appear here. Composition values range from 0.0 to 100.0%.
System pressure – Displays system pressure, in kPa, bar, or psi. You can specify pressure
units in the console software.
You can access these additional functions by right-clicking anywhere in the solvent manager
control panel.
Start up system Brings the system to operational conditions after an extended idle period or
when switching to different solvents.
Note: If you are in a degasser pump down state, a separate degasser pump down status icon
appears on your control panel to provide you with system status feedback.
Rule: You can edit these settings when the system is idle by clicking on the underlined value.
You cannot edit ISM settings while the system is running samples.
Flow LED – Displays on the front panel of the solvent manager the status of the flow state,
unless communications are lost.
Flow rate – Displays the flow rate of solvent through all lines of the ISM, from 0.000 to
2.000 mL/min, under normal operation, and 0.000 to 4.000 mL/min, when priming.
Stop flow – When clicked, immediately stops all flow from the solvent manager.
Currently selected solvent line – Displays the currently selected solvent line (S1 through
S6). If the optional solvent selection valve is not installed, the display will be blank.
System pressure – Displays system pressure, in kPa, bar, or psi. You can customize
pressure units via the console.
Status – Displays the status of the current operation. (In this representation of the control
panel, the status is blank.)
You can access these additional functions by right-clicking anywhere in the ISM control panel.
Start up system Brings the system to operational conditions after an extended idle period or
when switching to different solvents.
Prime solvent Displays the Prime Solvent dialog box and allows for manual changeover or
refreshing of solvent. Solvents are automatically shunted to waste.
Prime seal Starts priming the seal wash which lubricates the plungers, fills the tubing
wash paths with solvent and flushes away solvent and or any precipitated salts that
have been dragged past the plunger seals from the high-pressure side of the
piston chambers.
Wash plungers Initiates the plunger-wash sequence, which fills and then slowly empties the
primary and accumulator chambers (with the current solvent composition)
while performing a high speed/volume seal wash. This action helps prevent
precipitate buildup on the pump plungers. Such a buildup can damage the
high pressure seals.
Launch console Launches the console.
Reset ISM Resets the ISM after an error condition.
Help Displays the online Help for the console software.
If Empower software controls the system, the detector’s control panel appears at the bottom of
the Run Samples window. If MassLynx software controls the system, the detector’s control panel
appears at the bottom of the Inlet Editor window.
You can edit detector parameters when the system is idle by clicking the underlined value. You
cannot edit these values while the system is running samples.
Lamp LED – Mirrors the lamp status LED on the front panel of the detector, unless
communications with the detector are lost.
Current drift tube temperatures – Displays both the set point temperature and current drift
tube temperatures.
Current nebulizer gas pressure – Displays the current nebulizer set gas pressure from 20
to 60 psi.
Photomultiplier tube gain factors – Displays the gain setting, programmable from 0 to
1000.
Current sample energy – Displays the sample signal, in light scattering units.
You can access these additional functions by right-clicking anywhere in the detector control
panel.
If Empower software controls the system, the detector's control panel appears at the bottom of
the Run Samples window. If MassLynx software controls the system, the detector's control panel
appears at the bottom of the Inlet Editor window.
You can edit detector parameters when the system is idle by clicking the underlined value. You
cannot edit these values while the system is running samples.
Emission units or energy units – Displays the emission units or energy units.
Lamp icon – When clicked, ignites or extinguishes the lamp. If the icon is green, the lamp
is ignited. If the icon is red, the lamp is extinguished.
Operating mode – Displays the current operating mode of the detector: single channel,
multichannel, spectrum scanning, or 3D.
Photomultiplier tube gain factor – Displays the current photomultiplier-tube gain factor.
You can access these additional functions by right-clicking anywhere in the detector control
panel.
You can edit detector parameters when the system is idle by clicking the underlined value. You
cannot edit these values while the system is running samples.
Lamp LED – Mirrors the lamp status LED on the front panel of the detector, unless
communications with the detector are interrupted.
Lamp icon – When clicked, ignites or extinguishes the lamp. If the icon is green, the lamp
is ignited. If the icon is red, the lamp is extinguished.
Shutter position – Displays the current position of the detector shutter: open, closed,
erbium, or UV-blocking.
You can access these additional functions by right-clicking anywhere in the detector control
panel.
Run status LED – Mirrors the run status LED on the front panel of the detector, unless
communications with the detector are interrupted.
Recycle indicator – When clicked, the recycle valve changes positions to avoid wasting
solvent when equilibrating the detector.
Current flow cell temperature – Displays the current flow cell temperature.
Flow cell temperature set point – Displays the set point for the flow cell temperature.
Peak polarity – Displays the polarity of the output signal. If the polarity is negative, the
chromatogram is inverted.
You can access these additional functions by right-clicking anywhere in the detector control
panel.
The following table describes the items in the TUV’s control panel:
Lamp LED – Mirrors the lamp status LED on the front panel of the detector, unless
communications with the detector are interrupted.
Lamp ignition – When clicked, ignites or extinguishes the lamp. If the icon is green, the
lamp is ignited. If the icon is gray, the lamp is off. If the icon is red, the lamp is in an error
state.
You can access these additional functions by right-clicking anywhere in the detector control
panel.
• Selected ion recording (SIR), where the instrument records the signal intensity at a static m/z
ratio.
For more information, see the ACQUITY QDa Detector Overview and Maintenance Guide on your
documentation media, or at Waters.com.
Cell temperature set point – Displays the set point for the flow cell temperature.
Peak polarity – Displays the polarity of the output signal. If the polarity is negative, the
chromatogram is inverted.
• Flush all flow paths, including the needle wash, with plenty of non-buffered solvent
before shutting down the system.
• For extended shutdown periods (longer than 24 hours), use 10% to 20% methanol
in water.
• Use of buffers can cause salt build-up on the needle and wash port, which can
require periodic cleaning.
Notes:
• If you are priming with solvents that differ significantly from the current solvents, prime
the solvent manager for minimum of 5 minutes.
• If you are using a concentrated acid and a concentrated base, it is recommended that
the lines are not primed in succession. Instead, to reduce the risk of salt formation,
ensure the pump is flushed or primed with water prior to priming the second buffer.
• If you want to return settings to their original values on any tab, click Set Defaults.
3. On the Prime Solvents tab, click the sample manager sub-tab and if necessary, change
the settings for the wash and purge solvent.
Note: Column
selection for the
Column Manager
defaults to Column
1.
Sample temperature On Off, or 4.0 to 40.0 °C
Lamp On On or Off
Note: Change the settings on the Optional Characterize tab only if the needle has been
replaced.
5. Click Start.
Result:
1. The system begins to prime.
2. The system establishes the method flow rate, column and sample temperatures, and
ignites the lamp.
3. After priming, the sample manager characterizes the needle and seal, if selected,
and then logs the results of the characterizations into the database.
• Serial number of the system module and its firmware version, if applicable
• Flow rate
• Operating pressure
• Solvent or solvents
• Firmware version
• Firmware checksum
• Component software version
Alternatives:
• In the main window, point to the visual representation of the system module that you
want information about.
• Obtain the serial number from the printed labels on the module’s rear panel or inside
the module door.
Note: A Waters Technical Service representative unpacks and installs the system components.
Warning: To avoid spinal and muscular injury, do not attempt to lift a system module
without assistance.
If you must transport a system component, or remove it from service, request recommended
cleaning, flushing, and packaging procedures from Waters Technical Service.
Detector
Column heater
Ethernet switch
Workstation
Ethernet cables
Detector
Column heater
PEEK tubing
Detector
Waste container
Leak path
Warning: To avoid electric shock, do not remove protective panels from system
modules. The components within are not user-serviceable.
Notice: To avoid damaging the electronic components of the sample manager and the
column heater or column heater/cooler, always power-off the sample manager and
column heater/cooler before connecting or disconnecting the interconnect cable.
• Inspect the power cords for damage and replace them if necessary.
• Power-off and unplug each module before performing any maintenance operation
on it.
Note: Some column modules, such as the column heater (CH-A), the column heater 30 cm
(CH-30A), and the column manager auxiliary (CM-Aux), receive their power from the sample
manager via the interconnect cable.
Recommendation: Use a line conditioner and uninterruptible power supply (UPS) for
optimum, long-term, input-voltage stability. Contact Waters to ensure the correct selection and
size.
2. Connect the male end of the power cord to a suitable grounded wall outlet.
• Inspect the power cords for damage and replace them if necessary.
• Power-off and unplug each module before performing any maintenance operation
on it.
Recommendation: Use a line conditioner and uninterruptible power supply (UPS) for
optimum, long-term, input-voltage stability.
2. Connect the hooded, male end of the cart's electrical cables to the power strips on its back.
3. Connect each power strip's cable to a wall outlet operating on its own circuit.
• Flat-blade screwdriver
• Connector
• Signal cable
Connector port
Connector
2. Using the flat-blade screwdriver, attach the positive and negative leads of the signal cable
to the connector.
Tip: Refer to the cable-connection label affixed to the rear panel of the module.
Screw
Connector
Signal cable
3. Fit the grounding cable's fork terminal on the rear-panel grounding stud and secure the
terminal using the locking nut.
Fork terminal
Locking nut
Grounding stud
The sample manager powers and communicates with the column module (CH-A, CH-30A, and
the CM-Aux). The external communication cable must be connected to the rear of the column
module and the sample manager.
Note: The CM-A and 30-cm CHC both require their own separate power supplies to operate.
1. Ensure that the sample manager and the column module are powered-off.
2. Connect the interconnect cable to the High Density (HD) port on the rear of the column
module.
3. Connect the other end of the interconnect cable to the PSPI port on the rear of the sample
manager.
Notes:
• The CM-A connects to the sample manager via an Ethernet connection.
3. Fully insert the post-injection loop tubing into port 6 of the injection valve, and then thread
the fitting into the port.
4. Holding the extension post-injection loop tubing against the bottom of the port, finger-
tighten the post-injection loop fitting.
5. Use the 1/4-inch open-end wrench to tighten the post-injection loop fitting an additional 1/6-
turn for existing fittings, or 3/4-turn for a new fitting.
Figure A–1: Post-injection loop
3
1
6. Screw the active preheater (APH) fitting into the post-injection loop union, and then use the
1/4-inch open-end wrench to tighten the fitting 3/4-turn beyond finger-tight for a new fitting,
or 1/6-turn beyond finger-tight for existing fittings.
The following symbols warn of risks that can arise when you operate or maintain a Waters
instrument or device or component of an instrument or device. When one of these symbols
appears in a manual’s narrative sections or procedures, an accompanying statement identifies
the applicable risk and explains how to avoid it.
Warning: (Risk of exposure to biological agents that can pose a serious health threat.)
Warning: To avoid injury from bursting, nonmetallic tubing, heed these precautions
when working in the vicinity of such tubing when it is pressurized:
• Be aware that some compounds, like methylene chloride and dimethyl sulfoxide,
can cause nonmetallic tubing to swell, significantly reducing the pressure at which
the tubing can rupture.
Specific precautions appear in the latest edition of the US National Institutes of Health (NIH)
publication Biosafety in Microbiological and Biomedical Laboratories (BMBL).
Warning: Observe Good Laboratory Practice (GLP) at all times, particularly when
working with hazardous materials. Consult the Material Safety Data Sheets regarding
the solvents you use. Additionally, consult the safety representative for your
organization regarding its protocols for handling such materials.
B.2 Notices
Notice advisories appear where an instrument, device, or component can be subject to use or
misuse that can damage it or compromise a sample’s integrity. The exclamation point symbol and
its associated statement alert you to such risk.
Notice: To avoid damaging the case of the instrument or device, do not clean it with
abrasives or solvents.
Warning: Changes or modifications to this unit not expressly approved by the party
responsible for compliance could void the user’s authority to operate the equipment.
Avertissement : Toute modification sur cette unité n’ayant pas été expressément
approuvée par l’autorité responsable de la conformité à la réglementation peut annuler
le droit de l’utilisateur à exploiter l’équipement.
警告: 未經有關法規認證部門允許對本設備進行的改變或修改,可能會使使用者喪失操作
該設備的權利。
警告: 未经有关法规认证部门明确允许对本设备进行的改变或改装,可能会使使用者丧
失操作该设备的合法性。
警告: 規制機関から明確な承認を受けずに本装置の変更や改造を行うと、本装置のユーザーとして
の承認が無効になる可能性があります。
Warning: Use caution when working with any polymer tubing under pressure:
• Always wear eye protection when near pressurized polymer tubing.
• Be aware that methylene chloride and dimethyl sulfoxide cause nonmetallic tubing
to swell, which greatly reduces the rupture pressure of the tubing.
• Non utilizzare tubi non metallici con tetraidrofurano (THF) o acido solforico o nitrico
concentrati.
• El usuario deberá protegerse siempre los ojos cuando trabaje cerca de tubos de
polímero sometidos a presión.
• No se debe trabajar con tubos que se hayan doblado o sometido a altas presiones.
• Hay que tener en cuenta que el cloruro de metileno y el sulfóxido de dimetilo dilatan
los tubos no metálicos, lo que reduce la presión de ruptura de los tubos.
• 熄滅附近所有的火焰。
• 不要使用已經被壓癟或嚴重彎曲管線。
• 不要在非金屬管線中使用四氫呋喃或濃硝酸或濃硫酸。
• 要了解使用二氯甲烷及二甲基亞楓會導致非金屬管線膨脹,大大降低管線的耐壓能
力。
警告: 当有压力的情况下使用管线时,小心注意以下几点:
• 当接近有压力的聚合物管线时一定要戴防护眼镜。
• 熄灭附近所有的火焰。
• 不要使用已经被压瘪或严重弯曲的管线。
• 不要在非金属管线中使用四氢呋喃或浓硝酸或浓硫酸。
• 要了解使用二氯甲烷及二甲基亚枫会导致非金属管线膨胀,大大降低管线的耐压能
力。
警告: 圧力のかかったポリマーチューブを扱うときは、注意してください。
• 加圧されたポリマーチューブの付近では、必ず保護メガネを着用してください。
• 近くにある火を消してください。
• 著しく変形した、または折れ曲がったチューブは使用しないでください。
• 非金属チューブには、テトラヒドロフラン(THF)や高濃度の硝酸または硫酸などを流さないでくださ
い。
• 塩化メチレンやジメチルスルホキシドは、非金属チューブの膨張を引き起こす場合があり、その場
合、チューブは極めて低い圧力で破裂します。
This warning applies to Waters instruments fitted with nonmetallic tubing. This warning applies to
instruments operated with flammable solvents.
Avertissement : L’utilisateur doit être informé que si le matériel est utilisé d’une façon
non spécifiée par le fabricant, la protection assurée par le matériel risque d’être
défectueuses.
Warnung: Der Benutzer wird darauf aufmerksam gemacht, dass bei unsachgemäßer
Verwendung des Gerätes die eingebauten Sicherheitseinrichtungen unter Umständen
nicht ordnungsgemäß funktionieren.
警告: 使用者必須非常清楚如果設備不是按照製造廠商指定的方式使用,那麼該設備所
提供的保護將被消弱。
警告: 使用者必须非常清楚如果设备不是按照制造厂商指定的方式使用,那么该设备所
提供的保护将被削弱。
警告: ユーザーは、製造元により指定されていない方法で機器を使用すると、機器が提供している
保証が無効になる可能性があることに注意して下さい。
Finding fuse types and ratings when that information appears on the instrument
or device:
Warning: To protect against fire, replace fuses with those of the type and rating
printed on panels adjacent to instrument fuse covers.
Warnung: Zum Schutz gegen Feuer die Sicherungen nur mit Sicherungen ersetzen,
deren Typ und Nennwert auf den Tafeln neben den Sicherungsabdeckungen des
Geräts gedruckt sind.
Avvertenza: per garantire protezione contro gli incendi, sostituire i fusibili con altri
dello stesso tipo aventi le caratteristiche indicate sui pannelli adiacenti alla copertura
fusibili dello strumento.
Advertencia: Para evitar incendios, sustituir los fusibles por aquellos del tipo y
características impresos en los paneles adyacentes a las cubiertas de los fusibles del
instrumento.
警告: 為了避免火災,更換保險絲時,請使用與儀器保險絲蓋旁面板上所印刷之相同類
型與規格的保險絲。
警告: 为了避免火灾,应更换与仪器保险丝盖旁边面板上印刷的类型和规格相同的保险
丝。
警告: 火災予防のために、ヒューズ交換では機器ヒューズカバー脇のパネルに記載されているタイプお
よび定格のヒューズをご使用ください。
Finding fuse types and ratings when that information does not appear on the
instrument or device:
Warning: To protect against fire, replace fuses with those of the type and rating
indicated in the “Replacing fuses” section of the Maintenance Procedures chapter.
Avertissement : pour éviter tout risque d'incendie, remplacez toujours les fusibles
par d'autres du type et de la puissance indiqués dans la rubrique "Remplacement des
fusibles" du chapitre traitant des procédures de maintenance.
Warnung: Zum Schutz gegen Feuer die Sicherungen nur mit Sicherungen ersetzen,
deren Typ und Nennwert im Abschnitt "Sicherungen ersetzen" des Kapitels
"Wartungsverfahren" angegeben sind.
Avvertenza: per garantire protezione contro gli incendi, sostituire i fusibili con altri
dello stesso tipo aventi le caratteristiche indicate nel paragrafo "Sostituzione dei fusibili"
del capitolo "Procedure di manutenzione".
Advertencia: Para evitar incendios, sustituir los fusibles por aquellos del tipo y
características indicados en la sección "Sustituir fusibles".
警告: 为了避免火灾,应更换“维护步骤”一章的“更换保险丝”一节中介绍的相同类
型和规格的保险丝。
警告: 火災予防のために、ヒューズ交換ではメンテナンス項目の「ヒューズの交換」に記載されているタ
イプおよび定格のヒューズをご使用ください。
Symbol Description
Electrical power on
Standby
Direct current
Alternating current
Alternating current (3 phase)
Safety ground
Fuse
Functional ground
Input
Output
Symbol Description
Keep upright!
Keep dry!
Fragile!
Use no hooks!
Temperature limitation
Warning: To avoid crushing your fingers beneath or between modules, use extreme
care when installing a module in the system stack.
Warning: To avoid injury, do not stack modules, including the solvent tray and rails,
higher than one meter (39.4 inches) above the bench top.
Alignment pins
Alignment slots
2. Lower the front of the module that you are adding so that its front alignment pin rests in the
front alignment slot on the previously added module.
Warning: To avoid spinal and muscular injury, do not attempt to lift a system module
without assistance.
2. Carefully lower the module so that the feet rest in the indents.
Important: To maintain the integrity of the system stack and integrated waste system,
ensure that the feet of the upper module rest in the indents of the lower module.