Enzymes are protein catalysts that accelerate chemical reactions in living organisms. They are highly specific and efficient, allowing reactions to proceed rapidly under mild conditions. Enzymes are regulated and can be affected by factors such as pH, temperature, and inhibitors. There are six main classes of enzymes based on the type of chemical reaction they catalyze: oxidoreductases, transferases, hydrolases, lyases, isomerases, and ligases.
According to the International Union of Biochemistry, enzymes are classified into six major classes:
1. Oxidoreductases catalyze oxidation-reduction reactions and are divided into oxidases, anaerobic dehydrogenases, and hydroperoxidases.
2. Transferases catalyze group transfers and include methyl, carboxyl, aldehyde/keto, glucosyl, amino, phosphorus, acyl, and sulfur transferases.
3. Hydrolases catalyze hydrolysis reactions and include esterases, glycosidases, peptidases, deamidases, and phosphatases acting on acid anhydrides.
4. Lyases cleave groups from substrates without
This document discusses the biosynthesis of phospholipids. It begins by defining phospholipids as complex lipids containing phosphoric acid, fatty acids, nitrogenous bases, and alcohols. Phospholipids are synthesized primarily on the surfaces of the smooth endoplasmic reticulum and transported via vesicles to their destinations. There are two main types of phospholipids - glycerophospholipids and sphingolipids. Glycerophospholipids have asymmetrical fatty acid groups attached to carbon 1 and 2 of the glycerol backbone. They are synthesized by attaching two fatty acyl groups to glycerol-3-phosphate to form phosphatidic acid. The document then discusses the synthesis of specific phospholipids
The electron transport chain (ETC) is a series of protein complexes and carriers in the inner mitochondrial membrane that transport electrons from electron donors like NADH to final acceptors like oxygen. This transports protons from the mitochondrial matrix to the intermembrane space, building up a proton gradient. ATP synthase uses this proton gradient to phosphorylate ADP, producing approximately 34 ATP per glucose. The ETC is crucial for aerobic respiration as it extracts much more energy than glycolysis and the Krebs cycle alone.
The document summarizes the Krebs cycle, also known as the citric acid cycle or TCA cycle. It describes the cycle as a series of reactions that occur in mitochondria resulting in the oxidation of acetyl CoA to produce carbon dioxide, hydrogen atoms, and high-energy electron carriers. The cycle contains 8 enzyme-mediated steps that ultimately generate 3 NADH molecules, 1 FADH2, 1 GTP/ATP, and 2 CO2 per turn of the cycle. The cycle plays a key role in aerobic respiration by generating electron carriers that feed into the electron transport chain to produce ATP.
The citric acid cycle (TCA cycle) occurs in the mitochondria and involves a series of reactions that oxidize acetyl groups from acetyl-CoA derived from carbohydrates, fats, and proteins, releasing carbon dioxide and reducing equivalents (NADH and FADH2) that are used to generate ATP through oxidative phosphorylation. The TCA cycle produces two GTP/ATP molecules per acetyl-CoA molecule oxidized and feeds reduced electron carriers into the electron transport chain to produce additional ATP. It is also an amphibolic pathway that generates precursors for various biosynthetic pathways.
A comprehensive coverage of Enzymes including basics, mechanisms of enzyme catalysis, enzyme inhibition and clinical applications, mostly based on Stryer- Biochemistry. The slides were intended for MBBS teaching, but should benefit the students of Biochemistry and allied sciences.
Prepared in Sept 2015
Glycolysis is a metabolic pathway that converts glucose into pyruvate, generating ATP and NADH. It is catalyzed by 10 cytosolic enzymes in 10 steps. There is a net gain of 2 ATP per glucose molecule. The NADH must be recycled to NAD+ either through aerobic respiration or by converting pyruvate to lactate anaerobically. Glycolysis is regulated at three irreversible steps catalyzed by hexokinase, phosphofructokinase-1, and pyruvate kinase. Other hexoses can also enter this ubiquitous pathway.
The document discusses enzyme kinetics models including the Michaelis-Menten model and Lineweaver-Burk double reciprocal plot. The Michaelis-Menten model relates reaction rate to substrate concentration using kinetic constants Km and Vmax. It describes the enzyme-substrate reaction mechanism. The Lineweaver-Burk plot is a graphical representation that transforms the Michaelis-Menten equation into a straight line to determine Km and Vmax. It can distinguish competitive and noncompetitive enzyme inhibition patterns.
This ppt describes the overview of enzyme regulation and Allosterism. Presented since October 23,2017GC at Addis Ababa University, School of Medicine, Department of medical biochemistry.
This document provides information about glycolysis, including:
1) Glycolysis involves the breakdown of glucose into pyruvate, producing 2 ATP and 2 NADH. There are 10 enzyme-catalyzed reactions in two stages.
2) Key regulatory enzymes include hexokinase, phosphofructokinase, and pyruvate kinase which control the flux of glycolysis.
3) Under anaerobic conditions, NADH is regenerated through lactic acid or ethanol fermentation to allow glycolysis to continue.
Inhibitors & uncouplers of oxidative phosphorylation & ETCDipesh Tamrakar
The document provides an overview of oxidative phosphorylation and electron transport chain inhibitors and uncouplers. It discusses key concepts like the Q-cycle, shuttle systems that transport cytosolic NADH into mitochondria, uncoupling proteins, and various inhibitors that target different parts of the electron transport chain and oxidative phosphorylation. Specific inhibitors and uncouplers mentioned include rotenone, antimycin, oligomycin, 2,4-dinitrophenol, and chloro carbonyl cyanide phenyl hydrazone. Thyroid hormones are also noted to play a role in regulating uncoupling proteins and thermogenesis.
Glycogenolysis is the breakdown of glycogen into glucose-1-phosphate. It occurs in three steps:
1) Phosphorolysis by glycogen phosphorylase cleaves α-1,4 glycosidic linkages, producing glucose-1-phosphate until four glucose residues remain.
2) A debranching enzyme removes these four residue branches through two activities, producing linear chains of glucose residues.
3) Phosphoglucomutase converts glucose-1-phosphate to glucose-6-phosphate, which can then enter glycolysis to produce energy or be released as free glucose from the liver. Glycogenolysis is regulated by allosteric effectors, hormones like glucagon and
This document summarizes ATP synthesis via oxidative phosphorylation and photophosphorylation. It describes how electron transport chains in the mitochondria and chloroplasts establish proton gradients across membranes, which are then used by ATP synthase complexes to phosphorylate ADP and produce ATP. Specifically, it outlines how electrons from NADH/FADH2 or water power proton pumping via complex I-IV in mitochondria or photosystems I and II in chloroplasts. The resulting proton gradient drives ATP synthesis when protons flow back through the ATP synthase.
Enzymes are protein catalysts that accelerate biochemical reactions without being consumed. They are specific, catalytic, reversible, and sensitive to temperature and pH changes. Enzymes lower the activation energy of reactions. The active site of an enzyme binds specifically to substrates. Some enzymes require cofactors like metal ions or coenzymes to function. Enzyme kinetics examines factors that influence reaction rates like substrate concentration. Michaelis-Menten kinetics describes the reversible binding of enzymes and substrates to form enzyme-substrate complexes. Enzyme inhibitors decrease catalytic activity by binding to the active site or elsewhere on the enzyme.
This document discusses carbohydrate classification and carbohydrate-protein associations. It focuses on glycosaminoglycans (GAGs), which are heteropolymers composed of repeating disaccharide units. Several important GAGs are described, including hyaluronic acid, chondroitin sulfate, dermatan sulfate, keratan sulfate, and heparin. The document also discusses proteoglycans, which are proteins covalently linked to GAGs. Finally, it covers glycoprotein synthesis and the differences between N-linked and O-linked glycosylation.
1) Organisms require chemical energy stored in high-energy compounds for processes like muscle contraction and active transport.
2) High-energy compounds include ATP, phosphoenolpyruvate, and acetyl-CoA, which contain high-energy bonds like phosphoanhydride and thioester bonds.
3) ATP is the most common energy currency in cells. It stores and transports chemical energy through its high-energy phosphoanhydride bonds, which are hydrolyzed to fuel energetic reactions.
This document summarizes polysaccharides and glycans. It discusses homopolysaccharides including fructosan, galactosan, and glucosans such as starch and glycogen. Starch is made of amylose and amylopectin and forms helical structures with iodine. Cellulose is composed of beta-glucose units linked by beta-1,4 bonds, forming long straight chains strengthened by hydrogen bonds. Glycosaminoglycans discussed include hyaluronic acid, chondroitin sulfate, keratin sulfate, dermatan sulfate, and heparan sulfate. Proteoglycans are composed of core proteins with covalently linked glycosaminoglycan side chains. They
The document discusses fatty acid synthesis. It begins by describing fatty acids and their roles in the body. It then covers the three main ways fatty acids are produced: diet, adipolysis, and de novo synthesis. The process of de novo synthesis occurs primarily in the liver, adipose tissue, and lactating mammary glands. It involves acetyl-CoA being carboxylated to malonyl-CoA by acetyl-CoA carboxylase. Fatty acid synthase then catalyzes the repeating cycles of condensation, reduction, dehydration, and reduction to elongate the fatty acid chain until a 16-carbon palmitate is produced. NADPH provides reducing equivalents for the reactions.
Biological oxidation and oxidative phosphorylationNamrata Chhabra
The document discusses cellular respiration and the electron transport chain. It states that organisms extract energy through respiration from organic molecules. During respiration, electrons are released from oxidation reactions and shuttled by electron carriers like NAD+ to the electron transport chain, where the electron energy is converted to ATP. The electron transport chain consists of four complexes embedded in the mitochondrial inner membrane that sequentially transfer electrons from NADH and FADH2 to oxygen to generate a proton gradient for ATP synthesis.
The document discusses Lineweaver-Burk plots, which are double reciprocal plots used to transform the Michaelis-Menten equation for enzyme kinetics into a linear form. This allows for a more accurate determination of the maximum velocity (Vmax) and Michaelis constant (Km) of an enzymatic reaction. The document provides examples of how to construct Lineweaver-Burk plots and extract Km and Vmax values from them. It also discusses how the plots can be used to determine the type of inhibition occurring in the presence of an inhibitor.
The document discusses several models of enzyme action and specificity. It describes the lock and key model and induced fit model, where the active site either pre-exists in a rigid confirmation or flexibly changes shape upon substrate binding. It also discusses how substrate binding can induce a change in substrate structure to promote reaction. Finally, it outlines different types of enzyme specificity, including stereo, reaction, and substrate specificity. Enzymes precisely recognize and act only on specific substrates or stereoisomers.
This document summarizes the process of de novo fatty acid synthesis. It occurs in the cytosol of liver, kidney, adipose tissue, and lactating mammary glands. Acetyl-CoA is the starting material, which is transported from mitochondria to the cytosol via citrate. In the cytosol, fatty acid synthase complex catalyzes the reactions to produce palmitic acid (C16) through cycles of condensation, reduction, dehydration, and reduction. The process requires acetyl-CoA, malonyl-CoA, ATP, and NADPH as substrates and is regulated by enzymes and hormones.
The document summarizes metabolism of phospholipids. Phospholipids are synthesized from phosphatidic acid and diacylglycerol in the smooth endoplasmic reticulum and mitochondrial membranes. They perform important structural and signaling functions. Phospholipids are broken down by phospholipases which cleave phosphodiester bonds. The degraded products enter metabolic pools and are used for various purposes. Lecithin-cholesterol acyltransferase also plays a role in cholesterol transport.
content:-
1. Introduction
2. Fermentation pathway
3. Production of some other foods & industrial chemical by use of fermentation
4. Energetics of fermentation
5. Summary
Enzymes are biological catalysts that are usually proteins. They greatly increase the rate of chemical reactions by lowering activation energy. Enzymes have an active site where substrates bind and reactions occur. Several factors affect enzyme activity including concentration, temperature, and pH. Enzymes are classified based on the type of reaction they catalyze such as oxidation, hydrolysis, or group transfer. Enzyme activity is regulated by feedback inhibition, cofactors, allosteric regulation, and post-translational modifications. Transition state analogs can be used to inhibit enzymes for medical applications.
The document provides information about enzymes including:
- Enzymes are protein catalysts that speed up biochemical reactions in living cells. They lower the activation energy of reactions and are not consumed in the process.
- Enzymes have specific three-dimensional structures that allow only specific substrates to bind to their active sites. This contributes to their high reaction specificity.
- Factors like temperature, pH, inhibitors, and cofactors can affect an enzyme's activity level.
This ppt describes the overview of enzyme regulation and Allosterism. Presented since October 23,2017GC at Addis Ababa University, School of Medicine, Department of medical biochemistry.
This document provides information about glycolysis, including:
1) Glycolysis involves the breakdown of glucose into pyruvate, producing 2 ATP and 2 NADH. There are 10 enzyme-catalyzed reactions in two stages.
2) Key regulatory enzymes include hexokinase, phosphofructokinase, and pyruvate kinase which control the flux of glycolysis.
3) Under anaerobic conditions, NADH is regenerated through lactic acid or ethanol fermentation to allow glycolysis to continue.
Inhibitors & uncouplers of oxidative phosphorylation & ETCDipesh Tamrakar
The document provides an overview of oxidative phosphorylation and electron transport chain inhibitors and uncouplers. It discusses key concepts like the Q-cycle, shuttle systems that transport cytosolic NADH into mitochondria, uncoupling proteins, and various inhibitors that target different parts of the electron transport chain and oxidative phosphorylation. Specific inhibitors and uncouplers mentioned include rotenone, antimycin, oligomycin, 2,4-dinitrophenol, and chloro carbonyl cyanide phenyl hydrazone. Thyroid hormones are also noted to play a role in regulating uncoupling proteins and thermogenesis.
Glycogenolysis is the breakdown of glycogen into glucose-1-phosphate. It occurs in three steps:
1) Phosphorolysis by glycogen phosphorylase cleaves α-1,4 glycosidic linkages, producing glucose-1-phosphate until four glucose residues remain.
2) A debranching enzyme removes these four residue branches through two activities, producing linear chains of glucose residues.
3) Phosphoglucomutase converts glucose-1-phosphate to glucose-6-phosphate, which can then enter glycolysis to produce energy or be released as free glucose from the liver. Glycogenolysis is regulated by allosteric effectors, hormones like glucagon and
This document summarizes ATP synthesis via oxidative phosphorylation and photophosphorylation. It describes how electron transport chains in the mitochondria and chloroplasts establish proton gradients across membranes, which are then used by ATP synthase complexes to phosphorylate ADP and produce ATP. Specifically, it outlines how electrons from NADH/FADH2 or water power proton pumping via complex I-IV in mitochondria or photosystems I and II in chloroplasts. The resulting proton gradient drives ATP synthesis when protons flow back through the ATP synthase.
Enzymes are protein catalysts that accelerate biochemical reactions without being consumed. They are specific, catalytic, reversible, and sensitive to temperature and pH changes. Enzymes lower the activation energy of reactions. The active site of an enzyme binds specifically to substrates. Some enzymes require cofactors like metal ions or coenzymes to function. Enzyme kinetics examines factors that influence reaction rates like substrate concentration. Michaelis-Menten kinetics describes the reversible binding of enzymes and substrates to form enzyme-substrate complexes. Enzyme inhibitors decrease catalytic activity by binding to the active site or elsewhere on the enzyme.
This document discusses carbohydrate classification and carbohydrate-protein associations. It focuses on glycosaminoglycans (GAGs), which are heteropolymers composed of repeating disaccharide units. Several important GAGs are described, including hyaluronic acid, chondroitin sulfate, dermatan sulfate, keratan sulfate, and heparin. The document also discusses proteoglycans, which are proteins covalently linked to GAGs. Finally, it covers glycoprotein synthesis and the differences between N-linked and O-linked glycosylation.
1) Organisms require chemical energy stored in high-energy compounds for processes like muscle contraction and active transport.
2) High-energy compounds include ATP, phosphoenolpyruvate, and acetyl-CoA, which contain high-energy bonds like phosphoanhydride and thioester bonds.
3) ATP is the most common energy currency in cells. It stores and transports chemical energy through its high-energy phosphoanhydride bonds, which are hydrolyzed to fuel energetic reactions.
This document summarizes polysaccharides and glycans. It discusses homopolysaccharides including fructosan, galactosan, and glucosans such as starch and glycogen. Starch is made of amylose and amylopectin and forms helical structures with iodine. Cellulose is composed of beta-glucose units linked by beta-1,4 bonds, forming long straight chains strengthened by hydrogen bonds. Glycosaminoglycans discussed include hyaluronic acid, chondroitin sulfate, keratin sulfate, dermatan sulfate, and heparan sulfate. Proteoglycans are composed of core proteins with covalently linked glycosaminoglycan side chains. They
The document discusses fatty acid synthesis. It begins by describing fatty acids and their roles in the body. It then covers the three main ways fatty acids are produced: diet, adipolysis, and de novo synthesis. The process of de novo synthesis occurs primarily in the liver, adipose tissue, and lactating mammary glands. It involves acetyl-CoA being carboxylated to malonyl-CoA by acetyl-CoA carboxylase. Fatty acid synthase then catalyzes the repeating cycles of condensation, reduction, dehydration, and reduction to elongate the fatty acid chain until a 16-carbon palmitate is produced. NADPH provides reducing equivalents for the reactions.
Biological oxidation and oxidative phosphorylationNamrata Chhabra
The document discusses cellular respiration and the electron transport chain. It states that organisms extract energy through respiration from organic molecules. During respiration, electrons are released from oxidation reactions and shuttled by electron carriers like NAD+ to the electron transport chain, where the electron energy is converted to ATP. The electron transport chain consists of four complexes embedded in the mitochondrial inner membrane that sequentially transfer electrons from NADH and FADH2 to oxygen to generate a proton gradient for ATP synthesis.
The document discusses Lineweaver-Burk plots, which are double reciprocal plots used to transform the Michaelis-Menten equation for enzyme kinetics into a linear form. This allows for a more accurate determination of the maximum velocity (Vmax) and Michaelis constant (Km) of an enzymatic reaction. The document provides examples of how to construct Lineweaver-Burk plots and extract Km and Vmax values from them. It also discusses how the plots can be used to determine the type of inhibition occurring in the presence of an inhibitor.
The document discusses several models of enzyme action and specificity. It describes the lock and key model and induced fit model, where the active site either pre-exists in a rigid confirmation or flexibly changes shape upon substrate binding. It also discusses how substrate binding can induce a change in substrate structure to promote reaction. Finally, it outlines different types of enzyme specificity, including stereo, reaction, and substrate specificity. Enzymes precisely recognize and act only on specific substrates or stereoisomers.
This document summarizes the process of de novo fatty acid synthesis. It occurs in the cytosol of liver, kidney, adipose tissue, and lactating mammary glands. Acetyl-CoA is the starting material, which is transported from mitochondria to the cytosol via citrate. In the cytosol, fatty acid synthase complex catalyzes the reactions to produce palmitic acid (C16) through cycles of condensation, reduction, dehydration, and reduction. The process requires acetyl-CoA, malonyl-CoA, ATP, and NADPH as substrates and is regulated by enzymes and hormones.
The document summarizes metabolism of phospholipids. Phospholipids are synthesized from phosphatidic acid and diacylglycerol in the smooth endoplasmic reticulum and mitochondrial membranes. They perform important structural and signaling functions. Phospholipids are broken down by phospholipases which cleave phosphodiester bonds. The degraded products enter metabolic pools and are used for various purposes. Lecithin-cholesterol acyltransferase also plays a role in cholesterol transport.
content:-
1. Introduction
2. Fermentation pathway
3. Production of some other foods & industrial chemical by use of fermentation
4. Energetics of fermentation
5. Summary
Enzymes are biological catalysts that are usually proteins. They greatly increase the rate of chemical reactions by lowering activation energy. Enzymes have an active site where substrates bind and reactions occur. Several factors affect enzyme activity including concentration, temperature, and pH. Enzymes are classified based on the type of reaction they catalyze such as oxidation, hydrolysis, or group transfer. Enzyme activity is regulated by feedback inhibition, cofactors, allosteric regulation, and post-translational modifications. Transition state analogs can be used to inhibit enzymes for medical applications.
The document provides information about enzymes including:
- Enzymes are protein catalysts that speed up biochemical reactions in living cells. They lower the activation energy of reactions and are not consumed in the process.
- Enzymes have specific three-dimensional structures that allow only specific substrates to bind to their active sites. This contributes to their high reaction specificity.
- Factors like temperature, pH, inhibitors, and cofactors can affect an enzyme's activity level.
The document discusses enzymes and their classification. It defines enzymes as biological catalysts that are usually proteins and increase the rate of chemical reactions. It describes the six main classes of enzymes based on their catalytic activity as well as the Enzyme Commission (EC) numbering system. The key points are that enzymes have unique active sites that substrates fit into, they are most active at optimal temperatures and pH levels, and their reaction rates depend on enzyme and substrate concentrations.
Enzymes are protein molecules that act as catalysts in biological processes, accelerating reactions by lowering their activation energy. Enzyme kinetics is the study of chemical reactions catalyzed by enzymes and how varying conditions affect reaction rates. The Michaelis-Menten model describes reaction rates in terms of the enzyme-substrate binding affinity (Km) and maximum reaction rate (Vmax). Graphical representations like Lineweaver-Burk and Eadie-Hofstee plots can determine these parameters from experimental data.
This document provides an overview of enzymes, including their chemistry, classification, mechanisms of action, kinetics, inhibition, and activation. It begins with the basic introduction that enzymes are protein catalysts that speed up biochemical reactions. It then covers enzyme structure and components like cofactors. The major sections explain classification of enzymes based on reaction type, mechanisms like induced fit and catalytic types, kinetics concepts like Michaelis-Menten modeling and factors affecting reaction rates, and types of inhibition like competitive and noncompetitive. The document aims to comprehensively summarize the key topics relating to enzymes.
Enzymes are proteins that act as catalysts to accelerate chemical reactions in living organisms. They are highly specific and only catalyze particular reactions. Enzymes work by weakening the bonds of reactants, reducing the amount of energy needed for the reaction to occur. The substance an enzyme acts on is called the substrate, which binds to the enzyme's active site to induce a shape change that facilitates the reaction. Environmental conditions like temperature and pH can impact enzyme activity, as can cofactors, coenzymes, and enzyme inhibitors.
The document provides information about Science Prof Online, a free science education website that offers various educational resources including virtual science classrooms, PowerPoints, articles, and images. It details the types of materials available on the site such as practice questions, review questions, lecture PowerPoints, video tutorials, and course syllabi. The document encourages users to check back frequently for updates or follow the site's social media accounts. It provides formatting options for PowerPoints and notes that images and links are meant to be interactive when viewed in slideshow mode.
The document discusses drug metabolism and excretion. It describes how drugs are metabolized in two phases - phase I involves reactions like oxidation, reduction and hydrolysis that make the drug more polar. Phase II involves conjugating the drug or its metabolites to make them water soluble, such as by glucuronidation, sulfation or glutathione conjugation. The major site of drug metabolism is the liver, specifically the microsomal enzyme systems. Cytochrome P450 enzymes play a key role in phase I reactions like oxidation. Making drugs more polar allows them to be excreted in urine or bile.
The document defines standard enthalpy change, exothermic and endothermic reactions, and signs for exo/endothermic reactions. It provides examples of enthalpy calculations, experiments to determine enthalpy changes, and defines combustion enthalpy, formation enthalpy, and Hess's law. Hess's law states that the enthalpy change for a reaction is independent of the pathway and depends only on the initial and final states.
Diagnostic enzymology
Enzymes are normally intracellular and LOW concentration in blood
Enzyme release (leakage)in the blood indicates cell damage (cell –death, hypoxia, intracellular toxicity)
Quantitative measure of cell/tissue damage
Organ specificity- but not absolute specificity inspite of same gene content.
Most enzymes are present in most cells-differing amounts
- Amylase, lipase, proteases added to laundry detergents
- Papain, bromelain added to meat tenderizers
- Lysozyme added to wound dressings
Diagnostic:
- Measuring enzyme levels in blood/urine to detect organ damage
- Measuring enzyme levels in blood to diagnose genetic disorders
Therapeutic:
- Enzyme replacement therapy for genetic disorders
- Enzymes as digestive aids or supplements
Research:
- Enzymes used as reagents in clinical assays and diagnostic kits
So in summary, enzymes play important roles in diagnostics, research, and therapeutics in medicine. Their catalytic properties are exploited for various applications.
This document discusses enzyme kinetics and inhibition. It describes how enzymes exert kinetic control over metabolic pathways and reactions. It aims to determine the maximum velocity, substrate affinity, and inhibitor affinity of enzymes. This can provide information about metabolic pathway flow, substrate utilization, and how to manipulate metabolic events. The document also discusses Michaelis-Menten kinetics, Lineweaver-Burk plots, competitive and non-competitive inhibition, and how inhibitors can be used to study enzyme mechanism and regulation.
This document provides an introduction to enzymes, including how they catalyze biological reactions with high rates, specificity, and capacity for regulation. It discusses how enzyme-substrate interactions are required for catalysis, and models like lock-and-key and induced fit describe these interactions. Enzymes may require cofactors like ATP and NADH. They are classified based on the type of reaction catalyzed, such as hydrolases and oxidoreductases. Enzymes can catalyze reactions with both low and high structural specificity, as well as stereochemical specificity in some cases. Their catalytic activity depends on recognizing transition states better than substrates.
This document summarizes guidelines for stability testing according to ICH guidelines. The key points are:
1) ICH guidelines are most commonly accepted and provide information on stability testing in the EU, Japan, and US. Stability testing aims to provide evidence of how quality varies over time under different conditions.
2) The objectives of ICH are more economical use of resources, eliminating delays in global development and availability of medicines, and maintaining safeguards for quality, safety, and efficacy.
3) Stability topics covered by ICH include testing, validation, impurities, specifications, and manufacturing. This summary focuses on stability testing guidelines for new drug substances and products.
Enzymes dr arifullah [compatibility mode]Rione Drevale
Enzymes are proteins that act as catalysts to speed up biochemical reactions. They have several key characteristics - they are effective in small quantities, efficient, specific, and their activity is affected by their surroundings. There are six main classes of enzymes classified by their catalytic activity. Factors like enzyme concentration, substrate concentration, pH, temperature, and inhibitors can affect an enzyme's activity. Inhibitors bind to enzymes to disrupt their activity, and can be competitive, noncompetitive, or irreversible.
The document discusses enzymes and their role in biochemical reactions. It notes that enzymes are biocatalysts that speed up reactions involved in digestion and metabolism. Enzymes are not used up in reactions and can be used over and over again. Enzymes increase the rate of reactions by reducing activation energy. They have strong catalytic power and can accelerate reactions by millions or billions of times compared to reactions without enzymes. The activity of enzymes is affected by factors like pH, temperature, and concentrations of substrates and enzymes. Coenzymes and cofactors are also required for some enzymes to function.
El Ciclo de Krebs o Ciclo del Ácido Cítrico transforma el ácido pirúvico en bióxido de carbono (CO2) a través de 8 pasos enzimáticos. Extrae átomos de hidrógeno del piruvato para formar ATP en la fosforilación oxidativa. Cada vuelta del ciclo produce 12 moléculas de ATP por molécula de piruvato al proporcionar sustratos para la cadena transportadora de electrones.
Enzymes are protein polymers that speed up chemical reactions in cells by lowering the activation energy required for reactions to occur. Enzymes catalyze reactions by binding to substrate molecules at their active sites, changing the substrate's shape in a way that makes the reaction easier to start. Once the reaction is complete, the enzyme detaches and can be reused for additional reactions. However, enzymes can become denatured by extreme temperatures, acids or bases, changing their structure and preventing them from functioning.
Enzymes are protein molecules that catalyze biological reactions. They work by lowering the activation energy of reactions, allowing more molecules to react. Enzymes are highly specific and their tertiary structure forms an active site that binds substrates. Inhibitors can bind the active site and prevent substrate binding (competitive) or bind elsewhere and alter the enzyme shape (non-competitive). The rate of enzyme reactions saturates at high substrate concentrations as active sites fill.
Enzymes are protein catalysts that speed up biochemical reactions without being consumed. They achieve high specificity by catalyzing particular substrate-product reactions. Many enzymes require cofactors like B vitamins to function, acting as carriers to transfer reactive groups from one substrate to another. The systematic enzyme nomenclature system provides unambiguous names related to substrates, reactions, and four-digit EC numbers for classification.
Enzymes are protein catalysts that catalyze chemical reactions in biological systems. They lower the activation energy of reactions, allowing them to proceed at normal body temperatures. Enzymes have specific binding sites that allow only specific substrates to bind, bringing them into proximity and orientation to react. This forms an enzyme-substrate complex where the enzyme induces strain to break bonds in the substrate, converting it into products that are then released.
Enzymes for UNDERGRADUATES AS PER RECENT NMC CURICULLUMRRIbhargavadrvishal
This document defines enzymes and provides details about their classification and nomenclature. It states that enzymes are protein biocatalysts that catalyze chemical reactions and can be made of either proteins or RNA. It then describes substrate and product, and historical figures in the discovery of enzymes. The document outlines the components of holoeznzymes and different types of coenzymes. It explains the International Union of Biochemistry system for classifying enzymes into six main classes based on the type of reaction catalyzed.
Enzymes are protein catalysts that speed up biochemical reactions without being consumed. They achieve high reaction rates through substrate binding and shape complementarity. Enzyme activity is affected by factors like temperature, pH, and salt concentration that can alter protein structure. Most enzymes exhibit high specificity for their substrate. Inhibition studies provide information about enzyme mechanisms and active sites. Regulation of enzyme activity occurs through feedback inhibition, allosteric regulation, covalent modification like phosphorylation, and conversion of inactive zymogens to active forms.
Enzymes are biological catalysts that accelerate chemical reactions without being consumed. They achieve this by lowering the activation energy of reactions. The document discusses the definition, mechanism of action, classification, and properties of enzymes. It also examines factors that affect enzyme activity such as temperature, pH, and inhibitors. Important clinical enzymes are mentioned for diagnosing conditions like heart attacks and liver disease. Key applications of enzymes include disease diagnosis, therapeutics, and use in laboratory reactions.
enzymes and it's clinical applications.pptxAlyaaKaram1
This document discusses enzymes and their properties. It defines enzymes as protein catalysts that increase the rate of chemical reactions without being used up. Enzymes can exist as simple enzymes made of only protein, or as holoenzymes which contain both a protein component (apoenzyme) and a non-protein component (cofactor). Coenzymes are cofactors that are vitamin derivatives essential for enzyme function. Metal ions are also required by many enzymes and can promote enzyme action in various ways. The document further describes enzyme properties such as active sites, specificity, regulation and isoenzymes. It outlines the classification system for enzymes and discusses factors that affect enzyme activity like temperature, pH and substrate concentration.
This document discusses enzymes and their clinical applications. It describes the general properties of enzymes, noting that they are protein catalysts that increase the rate of chemical reactions without changing themselves. It also discusses the nature, types, cofactors and coenzymes of enzymes. The mechanisms of enzyme action including the lock and key and induced fit models are described. The document also covers enzyme classification, regulation, zymogens, isoenzymes and the catalytic properties of enzymes including substrate specificity and active sites.
1. Enzymes are protein catalysts that increase the rate of chemical reactions without being consumed themselves. They direct all metabolic events in living organisms.
2. Enzymes have specific three-dimensional structures that form active sites which substrates bind to, forming enzyme-substrate complexes. Interactions at the active site facilitate the conversion of substrates to products.
3. Enzymes can be classified based on the type of reaction they catalyze, such as oxidoreductases, transferases, hydrolases, lyases, isomerases, and ligases. Each enzyme has a unique four-digit number identifying its catalytic reaction.
This document discusses enzymes and provides definitions, explanations of their mechanisms of action, and classifications. It describes how enzymes lower the activation energy of reactions, form enzyme-substrate complexes, and use induced fit and cofactors/coenzymes. Enzymes are classified based on the type of reaction they catalyze. Key properties include specificity, inhibition, and factors like temperature, pH, and inhibitors that influence enzyme activity. Important clinical enzymes are discussed.
This document discusses enzyme classification and models of enzyme active sites. It describes the lock-and-key and induced-fit models of enzyme-substrate binding. Enzymes are classified into six main classes based on the chemical reaction they catalyze: oxidoreductases, transferases, hydrolases, lyases, isomerases, and ligases. Each class is further divided into subclasses based on the specific reactions they catalyze, such as oxidases, dehydrogenases, kinases, and proteases.
This document provides an overview of the classification system used for enzymes. There are 6 main classes of enzymes: oxidoreductases, transferases, hydrolases, lyases, isomerases, and ligases. Each class is defined by the type of reaction it catalyzes. For example, oxidoreductases catalyze oxidation-reduction reactions while transferases catalyze the transfer of functional groups between molecules. The classification system allows enzymes to be systematically named and identified based on the reaction they catalyze.
Bioenergetics is the study of energy flow through living systems. Energy is required by all organisms and can be in kinetic or potential forms. Kinetic energy is energy of motion like heat or light, while potential energy is stored energy like in chemical bonds. Metabolism is the sum of all chemical reactions in cells and manages energy and material resources. Catabolic pathways release energy through exergonic reactions like cellular respiration. Anabolic pathways use this energy in endergonic reactions like photosynthesis to build molecules. ATP couples exergonic and endergonic reactions by transferring a phosphate during its hydrolysis and reformation. This allows cells to do work like transport or muscle contraction.
1) Enzymes are biological catalysts that speed up chemical reactions by lowering their activation energy.
2) Carbonic anhydrase contains a zinc ion cofactor that activates water molecules by lowering their pKa, allowing them to act as a nucleophile and catalyze the hydration of carbon dioxide to bicarbonate.
3) Cofactors such as metals, vitamins, and organic molecules help enzymes perform reactions by acting as electron carriers, binding substrates, or participating in the reaction mechanism.
Bioenergetics is the study of energy changes in biochemical reactions and biological systems. The laws of thermodynamics govern energy changes. ATP is the primary energy currency in cells. It is produced through oxidative phosphorylation where the energy released from redox reactions is used to pump protons across the mitochondrial inner membrane, creating a proton gradient. ATP synthase uses this proton gradient to phosphorylate ADP, producing ATP. Diseases can result from defects in the electron transport chain or oxidative phosphorylation.
This document reviews basic metabolic principles including:
1. ATP is the primary energy currency of cells and is generated through catabolic pathways and utilized in anabolic pathways. Other energy carriers include NADH, FADH2, and phosphate compounds.
2. Coenzymes such as coenzyme A help transfer chemical groups during reactions and some are derived from vitamins. Metabolic pathways are regulated by products and cellular energy levels.
3. Enzymes are classified based on the reactions they catalyze such as kinases, dehydrogenases, and transferases.
This document discusses the components and functions of the neuronal cytoskeleton during axon regeneration. It describes three main types of cytoskeletal elements - microtubules, microfilaments, and neurofilaments. Microtubules help maintain neuronal shape and transport molecules via fast and slow axonal transport. Microfilaments are present beneath the axon membrane and involved in growth cone movement and synaptic vesicle release. Neurofilaments provide neuronal stability. The document also discusses the different types of glial cells - astrocytes, oligodendrocytes, microglia, and ependymal cells - and their roles in the development and maintenance of the central nervous system.
This document contains exam questions for a Biochemistry II course covering topics such as factors influencing laboratory examination results, enzyme assays, glucose regulation, lipids and lipoproteins, cholesterol metabolism, metabolic relationships between organs, and protein metabolism. It includes 10 multiple choice or short answer questions.
This document provides guidance to international medical graduates on registering with the UK's General Medical Council (GMC) and securing their first foundation year 1 (FY1) job in the UK National Health Service (NHS). It outlines the steps to apply for GMC registration, including submitting documents and undergoing an identity check. It then discusses pursuing clinical attachments, maintaining NHS Jobs and job application profiles, and preparing for interviews. The document offers advice on clinical skills, teamwork experience, and handling acute situations. Overall, it is a comprehensive guide for international doctors transitioning to work in the UK healthcare system.
As the team captain, you are responsible for your team and must ensure all players are properly registered. You must submit a team registration form with 5-10 players before the first match. Players can only play for one team at a time and must transfer properly if changing teams. Matches are played in a league format, with points awarded for wins, draws, and losses. Teams can be penalized for missed matches or improper conduct through card suspensions or deductions of points. The captain must make sure all players follow the match and disciplinary rules.
Systemic corticosteroids are synthetic derivatives of cortisol that can be taken orally or via injection. They are used to treat various autoimmune and inflammatory conditions. Common side effects include increased risk of infection, skin thinning, acne, osteoporosis, diabetes, and psychiatric issues. Risks are higher with longer term or high dose use. Monitoring of blood pressure, weight, and blood sugar is recommended during treatment. Measures like calcium/vitamin D supplementation and bone density scans can help prevent side effects like osteoporosis. Some conditions like active tuberculosis or severe psychiatric disease are contraindications for steroid use due to risk of worsening.
Carcinogenesis is the process by which normal cells are transformed into cancer cells due to mutations in DNA that disrupt the orderly processes regulating cell proliferation and death. This results in uncontrolled cell division. A series of mutations in proto-oncogenes that promote cell growth and tumor suppressor genes that discourage cell growth are required before a normal cell transforms into a cancer cell. The ras oncogene and p53 tumor suppressor gene are examples that are commonly mutated in cancer. Grading of cancers provides information on prognosis and treatment by assessing how differentiated the cancer cells are from normal cells.
The document discusses pemphigus vulgaris, an autoimmune blistering disease of the skin and mucous membranes. It is characterized by the presence of autoantibodies against desmoglein 1 and 3, proteins involved in keratinocyte adhesion. The disease primarily involves the oral mucosa and causes flaccid blisters and painful erosions of the skin and mouth. Treatment involves potent topical or systemic corticosteroids and immunosuppressive agents.
Working and training in the national health service a guide for im gs finalMUBOSScz
This document provides guidance for international medical graduates thinking about working or training in the UK National Health Service. It outlines the structure of the NHS, opportunities available, and requirements for registration and immigration. Key points covered include an introduction to the NHS in England, benefits of working in the UK, advice for international medical graduates, opportunities in the NHS, registration requirements, immigration information, access to UK training, employment rights, pay and conditions, good employment practices, and important considerations. Contact information and websites are provided for further resources. The document aims to help international medical graduates understand working or training in the NHS in the UK.
1. The document lists 70 anatomical structures and their corresponding numbers.
2. It then provides detailed histological descriptions for several structures, including the lips, tongue, palate, tonsils, tooth, salivary glands, esophagus, stomach, duodenum, and small intestine.
3. The descriptions highlight the different tissue layers, cell types, and glands present in each structure at the microscopic level.
Presentation Session 2 -Context Grounding.pdfMukesh Kala
This series is your gateway to understanding the WHY, HOW, and WHAT of this revolutionary technology. Over six interesting sessions, we will learn about the amazing power of agentic automation. We will give you the information and skills you need to succeed in this new era.
The Best of Both Worlds: Hybrid Clustering with Delta Lakecarlyakerly1
The Best of Both Worlds: Hybrid Clustering with Delta Lake
This deck walks you through best practices, real-world use cases, and hybrid approaches to help you maximize performance while keeping your creative freedom intact.
Video of full session: https://www.youtube.com/watch?v=0Gbq3B1FI-8
You Don't Need an AI Strategy, But You Do Need to Be Strategic About AI - Jes...All Things Open
Presented at All Things Open AI 2025
Presented by Jessica Hall - Hallway Studio
Title: You Don't Need an AI Strategy, But You Do Need to Be Strategic About AI
Abstract: There’s so much noise about creating an “AI strategy,” it’s easy to feel like you’re already behind. But here’s the thing: you don’t need an AI strategy or a data strategy. Those things need to serve your business strategy and that requires strategic thinking.
Here’s what you’ll get:
A clear understanding of why AI is a means to an end—not the end itself—and how to use it to solve problems traditional methods can’t touch.
How to align AI with strategy using questions like “Where do we play? How do we win?” from Roger L. Martin and A.G. Lafley.
What successful AI initiatives have in common: clear value, smart use of unique data, and meaningful business impact.
A checklist to evaluate AI opportunities—covering metrics, workflows, and the human factors that make or break AI efforts.
Find more info about All Things Open:
On the web: https://www.allthingsopen.org/
Twitter: https://twitter.com/AllThingsOpen
LinkedIn: https://www.linkedin.com/company/all-things-open/
Instagram: https://www.instagram.com/allthingsopen/
Facebook: https://www.facebook.com/AllThingsOpen
Mastodon: https://mastodon.social/@allthingsopen
Threads: https://www.threads.net/@allthingsopen
Bluesky: https://bsky.app/profile/allthingsopen.bsky.social
2025 conference: https://2025.allthingsopen.org/
DON’T PANIC: AI IS COMING – The Hitchhiker’s Guide to AI - Mark Hinkle, Perip...All Things Open
Presented at All Things Open AI 2025
Presented by Mark Hinkle - Peripety Labs
Title: DON’T PANIC: AI IS COMING – The Hitchhiker’s Guide to AI
Abstract: AI is coming of age, and much like discovering intergalactic travel, it’s equal parts thrilling and terrifying. Fears of job loss, doomsday scenarios, and bureaucratic AI overlords dominate the conversation—but I think the reality is far less apocalyptic and far more exciting. With the right guide, you can navigate this new universe, adapt, and even thrive. That’s what AllThingsOpen.AI is all about—building a community where people and businesses don’t just survive AI’s rise but flourish in it. So grab your towel, keep an open mind, and let’s explore the future—without the panic. Listen to Conference Co-Producer and publisher of the Artificially Intelligent Enterprise, Mark Hinkle, provide a vision on how AI will play out in our lives.
Find more info about All Things Open:
On the web: https://www.allthingsopen.org/
Twitter: https://twitter.com/AllThingsOpen
LinkedIn: https://www.linkedin.com/company/all-things-open/
Instagram: https://www.instagram.com/allthingsopen/
Facebook: https://www.facebook.com/AllThingsOpen
Mastodon: https://mastodon.social/@allthingsopen
Threads: https://www.threads.net/@allthingsopen
Bluesky: https://bsky.app/profile/allthingsopen.bsky.social
2025 conference: https://2025.allthingsopen.org/
Delivering your own state-of-the-art enterprise LLMsAI Infra Forum
MemVerge CEO Charles Fan describes a software stack that can simplify and expedite the deployment of language models with capabilities such as GPU-as-a-Service, Training-as-a-Service, Inference-as-a-Service, and Transparent Checkpointing.
Let's Create a GitHub Copilot Extension! - Nick Taylor, PomeriumAll Things Open
Presented at All Things Open AI 2025
Presented by Nick Taylor - Pomerium
Title: Let's Create a GitHub Copilot Extension!
Abstract: Get hands-on in this talk where we'll create a GitHub Copilot Extension from scratch.
We'll use the Copilot Extensions SDK, https://github.com/copilot-extensions/preview-sdk.js, and Hono.js, covering best practices like payload validation and progress notifications and error handling.
We'll also go through how to set up a dev environment for debugging, including port forwarding to expose your extension during development as well as the Node.js debugger.
By the end, we'll have a working Copilot extension that the audience can try out live.
Find more info about All Things Open:
On the web: https://www.allthingsopen.org/
Twitter: https://twitter.com/AllThingsOpen
LinkedIn: https://www.linkedin.com/company/all-things-open/
Instagram: https://www.instagram.com/allthingsopen/
Facebook: https://www.facebook.com/AllThingsOpen
Mastodon: https://mastodon.social/@allthingsopen
Threads: https://www.threads.net/@allthingsopen
Bluesky: https://bsky.app/profile/allthingsopen.bsky.social
2025 conference: https://2025.allthingsopen.org/
Safer’s Picks: The 6 FME Transformers You Didn’t Know You NeededSafe Software
With over 500 transformers in FME, it’s easy to stick to your favourites – but what about the hidden gems that could help you achieve more than you thought possible in your workspaces?
In this lightning talk-style webinar, our Safe team panel of FME Experts will highlight underutilized transformers and clever techniques that can make your workflows more powerful, efficient, and dynamic. Whether it’s a transformer you’ve never explored before or an unexpected way to use an old favourite, you’re sure to walk away with new ideas to enhance your FME skills.
Transformers they’ll cover include:
Donal, the MapnikRasterizer: Learn how to generate high-quality raster outputs from vector data with precise control over symbolization and labelling
Crystal, the SchemaScanner: Detect schema drift on the fly and dynamically set your output schema based on incoming data.
Mark, the ModuloCounter: Discover how to group features efficiently using the number of groups, rather than group size.
Evie, the Aggregator: See how versatile it can be for concatenating, listing, and joining data as an alternative to other transformers.
Natalie, the RasterExpressionEvaluator: Simplify raster expressions using presets to make them repeatable and easy to manage.
Dave, the ChangeDetector: Fine-tune output configurations to pinpoint exactly what’s changed in your data.
Join us for this fast-paced, insight-packed session and uncover the FME transformers you didn’t know you needed!
Testing doesn't have to be scary! Testing Paralysis is real! Join us for a deep dive into TestBox, the powerful BDD/TDD testing framework. Learn how to write clean, fluent tests, automate your workflows, and banish bugs with confidence. Whether you're new to testing or a seasoned pro, this session will equip you with the tools to kill off that paralysis and win!
The Rise of AI Agents-From Automation to Autonomous TechnologyImpelsys Inc.
AI agents are more than just a buzzword—they are transforming industries with real autonomy. Unlike traditional AI, they don’t just follow commands; they think, adapt, and act independently. The future isn’t just AI-enabled—it’s AI-powered.
Achieving Extreme Scale with ScyllaDB: Tips & TradeoffsScyllaDB
Explore critical strategies – and antipatterns – for achieving low latency at extreme scale
If you’re getting started with ScyllaDB, you’re probably intrigued by its potential to achieve predictable low latency at extreme scale. But how do you ensure that you’re maximizing that potential for your team’s specific workloads and technical requirements?
This webinar offers practical advice for navigating the various decision points you’ll face as you evaluate ScyllaDB for your project and move into production. We’ll cover the most critical considerations, tradeoffs, and recommendations related to:
- Infrastructure selection
- ScyllaDB configuration
- Client-side setup
- Data modeling
Join us for an inside look at the lessons learned across thousands of real-world distributed database projects.
Making GenAI Work: A structured approach to implementationJeffrey Funk
Richard Self and I present a structured approach to implementing generative AI in your organization, a #technology that sparked the addition of more than ten trillion dollars to market capitalisations of Magnificent Seven (Apple, Amazon, Google, Microsoft, Meta, Tesla, and Nvidia) since January 2023.
Companies must experiment with AI to see if particular use cases can work because AI is not like traditional software that does the same thing over and over again. As Princeton University’s Arvind Narayanan says: “It’s more like creative, but unreliable, interns that must be managed in order to improve processes.”
SAP Business Data Cloud: Was die neue SAP-Lösung für Unternehmen und ihre Dat...IBsolution GmbH
Inhalt:
Daten spielen für jede Business-Transformation eine entscheidende Rolle. Mithilfe der SAP Business Data Cloud (BDC) sind Unternehmen in der Lage, sämtliche Daten miteinander zu verbinden und zu harmonisieren. Die SAP BDC stellt eine Weiterentwicklung der bisherigen SAP-Datenstrategie dar - mit SAP Datasphere und der SAP Analytics Cloud (SAC) als elementaren Säulen. Besonders hervorzuheben: Databricks ist als OEM-Produkt in die Architektur integriert. Die SAP BDC kombiniert neue und bestehende Technologien, um Anwendern angereicherte Datenprodukte, fortschrittliche Analyse-Funktionalitäten und KI-gestützte Insights-Anwendungen bereitzustellen. Kurz gesagt: Mit SAP BDC schaffen Unternehmen eine zentrale Drehscheibe für ihre geschäftskritischen Daten und legen die Basis für SAP Business AI.
In unserem Expertengespräch erläutern Stefan Hoffmann (Head of Cross Solution Management SAP HANA & Analytics bei SAP) und Martin Eissing (Projektmanager bei IBsolution), was es mit der SAP Business Data Cloud genau auf sich hat und welche konkreten Vorteile mit dem neuen Angebot einhergehen. Außerdem zeigen sie auf, wie das erste Feedback der Kunden zur SAP BDC ausfällt und welche Wege Unternehmen zur SAP BDC führen.
Zielgruppe:
- IT-Leiter/IT-Entscheider
- Data Analysts
- Datenarchitekten
- BI-Spezialisten
- Anwender in den Fachbereichen
Agenda:
1. Was ist die SAP Business Data Cloud (BDC)?
2. Einordnung in die SAP-Datenstrategie
3. Voraussetzungen und Mehrwerte der SAP BDC
4. Architektur der SAP BDC
5. Handlungsempfehlungen für SAP BW-Kunden und SAP Datasphere-Kunden
6. Q&A
SAP Business Data Cloud: Was die neue SAP-Lösung für Unternehmen und ihre Dat...IBsolution GmbH
Enzymes 1
1. Enzymes I Department of Biochemistry, FM MU, 2011 (J.D.) General features , c ofa ctors
2. Literatur e for Biochemi stry I Lecture files on is.muni.cz. Tomandl J., Táborská E.: Biochemistry I – Semin ars . MU, 200 8. Harvey R.A., Ferrier D.R.: Biochemistry . 5th ed., Lippincott Williams & Wilkins, 2011.
3. General features of enzymes bio catalysts different types of proteins / also RNA (ribozyme) with covalently attached prosthetic group and/or metal cation, oligomeric / multienzyme complexes / associated with membranes etc. different distribu tion in cell and in the body, make i s oform s (i s oenzym es ) s pecific ( towards substr ate and reaction ) , highly effective work under mild conditions in vivo - can be regulated in two ways in vitro - sensitive to many factors CAUTION: peptidyltransferase is ribozyme (AK) n -tRNA 1 + AK-tRNA 2 tRNA 1 + (AK) n+1 -tRNA 2 rRNA
4. Enzymes are highly efficient catalysts decrease activation energy increase the reaction rate much more efficient than other (inorganic) catalysts remain unchanged after reaction do not alter equilibrium constant K in vitro sensitive to many factors
5. Enzymes work under mild conditions narrow temperature range around 37 °C over 50 °C become denaturated = inactivated narrow pH range pH optimum most intracellular enzymes have pH optima around 7 digestion enzymes function in rather stronger acidic / alkaline environment (pepsin 1-2, trypsin ~ 8)
6. Enzymes can be regulated (see the lecture Enzym es II ) Activity of enzyme a ctivators inhibitors covalent modification (phosphorylation ) Quantity of enzym e regula tion of proteosynt hesis a nd proteol ysis of enzyme some hormones act as indu cers × repres s or s
7. Dual specifity of enzymes towards: Reaction catalyze just one type of reaction Substrate work with one substrate (or group of similar substrates) often stereospecific
8. Enzymes are stereospecific catalysts there are two types of stereospecific conversions: non-chiral substrate chiral product (one enantiomer) pyruvate L-lactate fumarate L-malate chiral substrate (one enantiomer) product L-alanine pyruvate (D-alanine does not react) D-glucose pyruvate (L-glucose does not react) chiral signal molecule complex with receptor biological response chiral drug (ant)agonist complex with receptor pharmacological response
9. Hydrogenation of pyruvate When pyruvate is hydrogenated without enzyme ( in vitro ), the reaction product is the racemic mixture of D-lactate and L-lactate : In the same reaction catalyzed by lactate dehydrogenase (in the presence of NADH +H + ), pyruvate is reduced stereospecifically to L-lactate only: 1. non-chiral substrate chiral product L-Lactate C COOH CH 3 H H O H C C CH 3 O O HO Enzyme L-Lactate D-Lactate
10. Non- enzym atic hydration of fumarate in vitro reaction proceeds to racemic D,L-malate fumarate L-malate D-malate addition from one side addition from another side 1. non-chiral substrate chiral product
11. Enzymatic hydration of fumarate (citrate cycle) in vivo just one enantiomer (L-malate) is produced reagent substrate 1. non-chiral substrate chiral product enzyme
12. Hydrogenation of D-fructose in vitro gives two epimer s 2 H + D-fructose D-glucitol D-mannitol reaction site is planar i n vivo : enzym atic reaction gives just one product (D-glucitol) 1. non-chiral substrate chiral product
13. Chiral substrates /signal molecules are bound to the stereospecific enzymes /receptors at three sites: Enzymes or receptors recognize only one enantiomer If the reactant of an enzymatic reaction is a chiral compound, only one of the two enantiomers is recognized as the specific substrate. 2. chiral substrate product see also MCH II, p. 13 R R X x p roper enantiomer n ot-fitting enantiomer
14. Enzyme nomenclature : the ending -ase Systematic names identify the enzymes fully with the EC code number , contain information about substrate and type of reaction, not very convenient for everyday use. Recommended (accepted) names are shorter than systematic names , include also some historical names (pepsin, amylase) EC (abbr. Enzyme Commission) of International Union of Biochemistry (IUB) major class number . subclass number . sub-subclass number . enzyme serial number http://www.chem.qmul.ac.uk/iubmb/enzyme/
16. Classification of enzymes: six classes according to reaction type (Each class comprises other subclasses) General scheme of reaction Enzyme class A + B + ATP A-B + ADP + P i 6. Ligases (synthetases) A-B-C A-C-B 5. Isomerases A-B A + B (reverse reaction: synthases) 4. Lyases A-B + H 2 O A-H + B-OH 3. Hydrolases A-B + C A + C-B 2. Transferases A red + B ox A ox + B red 1. Oxidoreductases
17. 1 Oxidoreductases catalyze the oxidation or reduction of substrate s ubclasses: dehydrogenases catalyze transfers of two hydrogen atoms oxygenases catalyze the incorporation of one / two O atoms into the substrate (monooxygenases, dioxygenases) oxidases catalyze transfers of electrons between substrates (e.g. cytochrome c oxidase, ferroxidase) peroxidases catalyze the breakdown of peroxides Example: lactate + NAD + pyruvate + NADH + H + Recommended name : lactate dehydrogenase Systematic name : ( S )-lactate :NAD + oxidoreductase
18. 2 Transferases catalyze the transfer of a group from one to another substrate s ubclasses: aminotransferases, methyltransferases, glucosyltransferases phosphomutases – the transfer of the group PO 3 2– within molecule kinases phosphorylat e substrate by the transfer of phosphoryl group PO 3 2– from ATP (e.g. hexokinases, proteinkinases) Example: glucose + ATP glucose 6- P + ADP Recommended name : glucokinase Systematic name : ATP:D-glucose phosphotransferase
19. Example: P hosphor ylation of glucose glucose glucose 6-phosphate gluco kinase
20. 3 Hydrolases Example: glucose 6- P + H 2 O glucose + P i Recommended name of the enzyme : glucose 6-phosphatase Systematic name : glucose 6-phosphate phosphohydrolase catalyze the hydrolytic splitting of esters, glycosides, amides , peptides etc. s ubclasses: esterases (lipases, phospholipases, ribonucleases, phosphatases ) glycosidases (e.g. s ucrase , maltase, lactase, amylase) proteinases and peptidases (pepsin, trypsin, cathepsins, dipeptidases, carboxypeptidases , aminopeptidases) amidases (glutaminase, asparaginase) ATPases ( split anhydride bonds of ATP )
23. Glutaminase is amidase which catalyzes the deamidation of glutamine glutam ate glutamin e glutamin ase
24. ATPase catalyzes the exergonic hydrolysis of phosphoanhydride bond in ATP ATP + H 2 O ADP + P i + energ y Example: muscle contraction myosine head exhibits ATPase activity, chemical energy of ATP is transformed into mechanical work (= actin-myosin contraction)
25. Examples of lysosomal h ydrolas es gly c oside gly c oside gly c oside sulfoester gly c oside peptide peptide peptide phosphodiester ester phosphoester amide Glu c osidas e Gala c tosidas e Hyaluronidas e Arylsulfatas e Lysozym e C athepsin Collagenase Elastase Ribonuclease Lipase Phosphatase Ceramidase Bond hydrolyzed Hydrolas e
26. Distinguish : lysozym e × ly s osom e Lyso zym e is en zym e compound word , lyso ( Greek lysis ) + zym e ( from enzym e ) hydrolas e , gly c osidas e , cleaves β -1,4-gly c osid e bond in ba c teri al hetero polysa c charide s, antiseptic defense occurs in saliva, tears, and other body fluids Lysosom e is intracellular digestion organelle Greek compound word from lysis (to lyse) and soma (body) typic al for animal cells acidic pH, contains many acidic hydrolas es
27. 4 Lyases catalyze non-hydrolytic splitting or forming bonds C–C, C–O, C–N, C–S through removing or adding , respectively, a small mole c ule ( H 2 O, CO 2 , NH 3 ) Some frequent recommended names: ammonia lyases (e.g. histidine ammonia lyas e: histidine urocanate + NH 3 ) decarboxylases ( amino acid amine + CO 2 ) aldolases (catalyz e aldol cleavage and formation) ( de ) hydratases (carbonate dehydratase : CO 2 + H 2 O H 2 CO 3 ) Example: fumarate + H 2 O L-malate Recommended name : fumarate hydratase Systematic name: ( S )-malate hydro-lyase (fumarate-forming)
29. 6 Ligases catalyze formation of high-energy bonds C–C, C–O, C–N in the reaction s coupled with hydrolysis of ATP Frequent recommended names : carboxylases synthetases (e.g. glutamine synt h etase : glutamate + ATP + NH 3 glutamine + ADP + P i ) Example: p yruvate + CO 2 + ATP + H 2 O oxaloacetate + ADP + P i Recommended name : pyruvate carboxylase Systematic name: pyruvate:carbon-dioxide ligase (ADP-forming)
30. T hree enzym es have something to do with ph os phate ! (gly c ogen) n + P i (gly c ogen) n-1 + glu c os e 1 -P inosine + P i hypoxanthine + ribose 1-P ph os ph orol ysis = the splitting of gly c osid e bond by ph os phate = transfer of glu c osyl to in organic ph os phate Ph os ph orylas e (Transferas e ) substr ate -O-P + H 2 O substr ate -OH + P i the h ydrol ysis of ph os ph oester bond Ph os ph atas e (Hydrolas e ) substr ate -OH + ATP substr ate -O-P + ADP ph os ph oryla tion = transfer of ph os ph oryl PO 3 2– from ATP to substr ate Kinas e (Transferas e ) Reaction s ch eme / Reaction type Enzym e ( Class )
31. Distinguish : Three types of lysis (decomposition of substrate) ! the cleavage of C-C bond by s ulfur atom of coenzyme A in β -oxida tion of FA or keto ne bodies catabolism RCH 2 COCH 2 CO-SCoA + CoA-SH RCH 2 CO-SCoA + CH 3 CO-SCoA Thiol ysis the cleavage of O / N -gly c osid e bond by ph os phate : (gly c ogen) n + P i (gly c ogen) n-1 + glu c os e 1-P Ph os ph orol ysis (see previous page) the decomposition of substr ate by water , frequent in intestine: sucrose + H 2 O glu c os e + fru c tos e ( starch ) n + H 2 O maltos e + ( starch ) n-2 Hydrol ysis
32. Cofactors of enzymes low-molecular non-protein compounds many of them are derived from B-complex vitamins many of them are nucleotides transfer 2 H or e - (cooperate with oxidoreductases) transfer groups (cooperate with transferases) tightly (covalently) attached – prosthetic groups loosely attached – coenzymes (cosubstrates)
33. T hree different components in enzyme reaction Notes: one or two substrates may be involved (dehydrogenation × transamination) substrate can be low / high molecular (hexokinase × protein kinase) some reactions proceed without cofactor (hydrolysis, isomeration) reaction can be reversible or irreversible (dehydrogenation × decarboxylation) enzyme substrate cofactor product cofactor altered + + substrate(s) cofactor enzyme catalyzes the whole process react to each other
34. Cofactors of oxidoreductases NAD + acceptor of 2H NADPH+H + donor of 2H FAD acceptor of 2H BH 4 donor of 2H electron transfer antioxidant / transfer of acyl transfer of 2 electrons + 2 H + transfer of 1 electron transfer of 1 electron 2 GSH donor of 2H The function of cofactor NADH+H + NADPH+H + FADH 2 tetrahydrobiopterin (BH 4 ) molybdopterin red dihydrolipoate (2 -SH) ubiquinol (QH 2 ) heme-Fe 2+ non-heme-S-Fe 2+ glutathione red (GSH) NAD + NADP + FAD Dihydrobiopterin (BH 2 ) Molybdopterin oxid Lipoate (-S-S-) Ubiquinone (Q) Heme-Fe 3+ Non-heme-S-Fe 3+ Glutathione oxid (G-S-S-G) Reduced form Oxidized form
35. NAD + is the cofactor of dehydrogenas es NAD + is oxidant – takes off 2 H from substr ate one H adds as hydrid e ion (H - ) into para- po sition of pyridini um c ation of NAD + NAD + + H - = NADH = equivalent of two electrons the second H is released as proton (H + ) and binds to enzyme molecule 2 H = H – + H +
36. NAD + ( n icotinamide a denine d inucleotide) ribose diphosphate ribose N-glycosidic linkage N-glycosidic linkage addition of hydride anion anhydride adenine
37. Redox p air of co fa c tor oxidized form NAD + reduced form NADH aromatic ring aromaticity totally disturbed tetravalent nitrogen trivalent nitrogen positive charge on nitrogen electroneutral species high-energy compound !
38. Dehydrogenation by NAD + typical substrate groups: primary alcohol -CH 2 -OH secondary alcohol >CH-OH se condary amine >CH-NH 2 double bond (C=O, C=N) is produced
39. NAD + dehydrogena tions form a double bond compare Med. Chem. II Appendix 3 aldehyd e keton e c arboxyl ic acid ester la c ton e o xo acid i mino acid prim ary al c ohol se condary al c ohol a ldehyd e hydr ate hemi acetal cy clic hemiacetal h ydroxy acid a mino acid Produ c t Substr ate
42. NAD + -dependent enzym es are called pyridin e dehydrogenas es Citr ate cy cle isocitr a t e dehydrogenas e 2-oxoglutar ate dehydrogenas e mal a t e dehydrogenas e Gly colysis glyceraldehyd e 3-P dehydrogenas e la ctate dehydrogenas e Oxida tion of ethanol al c ohol dehydrogenas e acetaldehyd e dehydrogenas e
43. Redu ced c ofa c tor NADPH+H + is hydroge nation agent donor of 2 H in hydrogenations cofactor of reducing syntheses (FA, cholesterol) regenera tion of glutathione ( GSH ) in eryt h rocyte s cofactor of hydroxylation reactions: cholesterol bile acids calciol calcitriol xenobiotic hydroxylated xenobiotic general scheme of hydroxyla tion: R-H + O 2 + NADP H+H + R- O H + H 2 O + NADP +
44. FAD is c ofa c tor of flavin dehydrogena ses f lavin a denin e d inu c leotid e dehydrogena tion of -CH 2 -CH 2 - group two H atom s are attached to two nitrogens of riboflavin (N-1 a nd N-10) FAD + 2H FADH 2
45. FAD ( f lavin a denine d inucleotide) vazba 2H adenine ribosa difosfát ribitol dimethylisoalloxazine ribose diphosphate the sites for accepting two H atoms
46. Redox p air of c ofa ctor oxidized form FAD reduced form FADH 2 aromatic system aromaticity partially disturbed electroneutral species electroneutral species high-energy compound !
51. Coenzyme Q (ubiquinone) derivative of 1,4-benzoquinone cyclic diketone, not aromatic component of respiratory chain gradually accepts electron and proton (2x) reduced to semiubiquinone and ubiquinol
52. Reversible reduction of ubiquinone R = long polyisoprenoid chain lipophilic character electron (e - ) and proton (H + ) have different origin: electron comes from red. c ofa c tor s (= nutrients ) , H + from matrix of mitochondrion ( n on-aromatic diketone) ( arom atic ring + radi cal) ( di ph enol ) ubiquinone semiubiquinone ubiquinol Q • QH QH 2
53. Heme of various cytochromes transfers just 1 electron cytochromes are hemoprotein s components of respiratory chain or other heme enzymes (cyt P-450) reversible redox reaction: Fe 2+ Fe 3+
54. Non-heme iron (Fe 2 S 2 cluster) transfers electron in R.CH. just one iron cation changes oxidation number oxidized state reduced state
55. Xanthine oxidase catalyzes the oxygenation of purine bases (catabolism) hypoxanthine xanthine uric acid Molybdopterin (formula in Seminars) side product: H 2 O 2
56. Sulfite oxidase : sulfate is catabolite from cysteine cysteine HSO 3 - + H 2 O SO 4 2- + 3 H + + 2 e - pla s ma urine acidify plasma urine reduce Mo (see Seminars, p. 46 ) Molybdopterin
57. Redox pair lipoate/dihydrolipoate is antioxidant system. It is also involved in the acyl transfer (see later) oxidized form – lipoate (cyclic disulfide 1,2-dithiolane) reduced form - dihydrolipoate - 2H one S atom transfers acyl in oxidative decarboxylation of pyruvate / 2-oxoglutarate
58. Glutathione (GSH) tripeptide γ -glutamyl-cysteinyl-glycine cofactor of glutathione peroxidase (contains selenocysteine) reduces H 2 O 2 to water 2 G-SH + H-O-O-H G-S-S-G + 2 H 2 O Remember: The -SH compounds have generally reducing properties.
60. Vitamins and cofactors of transferases -NH 2 (transamination) -PO 3 2- (phosphoryl) -SO 3 2- CO 2 acyl acyl -CH 3 C 1 groups -CH 3 r esidue of oxo acid Transferred group pyridoxal phosphate ATP PAPS carboxybiotin CoA-SH dihydrolipoate SAM tetrahydrofolate methylcobalamin t hiamin diphosphate Pyridoxin (Made in body) (Made in body) Biotin Pantothenic acid (Made in body) ( Methionin e) Folate Cyanocobalamin Thiamin Cofactor Vitamin
61. Pyridoxal phosphate is the cofactor of transamination and decarboxylation of AA aldimine (Schiff base) - H 2 O transamination decarboxylation
62. Two phases of transamina tion Schiff base amino acid oxo acid glutamate 2-oxoglutarate blue colour indicates the pathway of nitrogen
63. ATP is the cofactor of kinases (phosphorylation agent) N-glycoside bond ester anhydride
64. Phosphorylation of substrate substrate kinase phosphorylated substrate CAUTION: creatine kinase (CK) phosphorylation on nitrogen (the bond N-P)
65. PAPS is sulfation agent 3 ’- ph osfoadenosin e -5’- phosphosulfate mixed anhydride of H 2 SO 4 and H 3 PO 4 esterification of hydroxyl groups by sulfuric acid = sulfation sulfated sphingoglycolipids sulfated glycosaminoglycans (heparin, chondroitin sulfate, keratan sulfate)
66. Carboxybiotin cofactor of carboxylation reactions carboxylation of biotin needs ATP carboxybiotin biotin
67. Carboxybiotin is the cofactor of carboxylation reactions + pyruvate oxaloacetate pyruvate carboxylase
68. Distinguish: Decarboxylation vs. Carboxylation ! protein-glutamate + O 2 + vit K red + CO 2 protein- γ -carboxyglutamate posttranslational carboxylation of glutamate hemostasis Phylloquinone (vitamin K) Hb-NH 2 + CO 2 Hb-NH-COOH (unstable Hb-carbamate, spontaneous) None pyruvate + CO 2 + ATP oxaloacetate acetyl-CoA + CO 2 + ATP malonyl-CoA propionyl-CoA + CO 2 + ATP methylmalonyl-CoA succinyl-CoA carboxylations (ATP) in the catabolism of Val, Leu, Ile Biotin Carboxylation (requires energy) Cofactor acetoacetate acetone + CO 2 (non-enzymatic, spontaneous) None amino acid amine + CO 2 Pyridoxal-P pyruvate acetyl-CoA + CO 2 2-oxoglutarate succinyl-CoA + CO 2 Thiamin-diP Decarboxylation (does not require energy) Cofactor
69. Coenzyme A (CoA-SH) transfers acyl attached to sulfur atom thioester bond a cyl -CoA is a c tiv ated acyl e.g. acetyl-CoA
70. Coenzyme A acyl ~ O O H C H 2 O P O O O O P O O O N N N N N H 2 H O P O O O C H 2 C HS C H 2 C H 2 H N O C C H 2 C H 2 H N O C C H C H 3 C H 3 Cysteamine β-Alanine Pantoic acid Pantothenic acid 3´ - PhosphoADP
71. Lipo ate ( lipoamide ) part of the 2-oxo acid dehydrogenase complex (see the following lectures) it is oxidant of a group carried by thiamine d iphosphate (TDP ), binds the resulting acyl as thioester and transfers the acyl to coenzyme A: S S CO– NH –L ys–Enzyme Lipoamide ( oxidized form) S 6 -Acyldihydrolipoamide (reduced form) S H CO– NH – Lys–Enzyme S H S H CO– NH –L ys–Enzyme S R-CO – 2 H R 1 -C H – TDP O H CoA-S H R-CO–S-CoA Dihydrolipoamide ( reduced form) H –TDP
72. S -Adenosylmethionine (SAM) „ active methyl“, trivalent sulfur sulfonium cation cofactor of methylation reactions: ethanolami n e -> cholin e (3 × methylation) guanidine acetate -> creatine noradrenaline -> adrenaline ..... and many others side product is homocysteine remethylation of homocysteine needs methyl-FH 4 + B 12 cofactor (see Seminars, p. 27 and 45)
74. Folic acid is vitamin. In the body, it is hydrogen ated to 5,6,7,8-tetrahydrofol ate . Tetrahydrofol ate (FH 4 ) is c ofa c tor for the transfer of C 1 groups amid 5 6 7 8 p-aminobenzoic acid glutamic acid amide pteridine transfer of 1C groups
75. C 1 Groups transferred by FH 4 compare scheme Seminars, p. 26 catabolism of histidine formimino -CH=NH +I catabolism of tryptophan formiate formyl synthesis of purine bases formyl -CH=O +I deamination of formimino-FH 4 (from histidine) synthesis of purine bases methenyl -CH= -I catabolism of serine, glycine used in synthesis of dTMP DNA methylene -CH 2 - -II reduction of methylene-FH 4 (from serine, glycine) methyl-FH 4 cooperates with B 12 cofactor in methylation methyl -CH 3 -III Metabolic Origin / Comment Name Formula Oxidation number of C
76. B 12 vitamin is cyano or hydroxo cobalamin R = CN or OH c o r rin cycle hydroxo c obalamin is used in the treatment of cyanide poisoning - binds cyanide ions to non-toxic cyanocobalamin
77. B 12 cofactor is methyl or deoxyadenosyl cobalamin, it is needed for two reactions in the body homocysteine methionine methylation of homocysteine (regeneration of methionine) homocysteine propionyl-CoA succinyl-CoA you can see both reactions in Seminars, p. 45 B 12 FH 4 / B 12
78. Compare: Four different cofactors of methylations SAM = S -adenosylmethionine, FH 4 = tetrahydrofolate, COMT = catechol O -methyltransferase ! homocysteine methionine methyl-FH 4 methyl-B 12 dUMP dTMP serine, glycine methylene-FH 4 homocysteine methionine methylene-FH 4 methyl-FH 4 ethanolamine choline guanidineacetate creatine noradrenaline adrenaline the methylation of DNA (regulation of gene expression) methylation of bases in tRNA / mRNA (guanine-N 7 = cap) the inactivation of catecholamines (COMT): dopamine methoxytyramine noradrenaline normetanephrine adrenaline metanephrine the methylation of xenobiotics (II. phase - conjugation) methionine SAM Examples of methylation reactions Methyl origin Cofactor -CH 2 -
79. Thiamin is vitamin B 1 Thiamin diphosphate (TDP) is cofactor Oxidative decarboxylation of some 2-oxo acids pyruvate acetyl-CoA 2-oxoglutar ate su c cinyl-CoA ( citrate cycle ) 2-oxo acids in the catabolism of Val, Leu, Ile Transketolase reactions in pentose cycle ribose-5-P + xylulose-5-P glyceraldehyd-3-P + sedoheptulose-7-P xylulose-5-P + erythrose-4-P fructose-6-P + glyceraldehyd-3-P transfer to dihydrolipoate and CoA
80. Thiamin di phosphate (TDP) is the c ofa c tor of the oxida tive de c arboxyla tion of pyruv ate glu c os e pyruv ate acetyl-CoA C A C TDP attachment of pyruv ate and its de c arboxyla tion
81. In human body, a number of non-enzymatic reactions proceeds decarboxylation of acetoacetate acetone glycation / carbamylation / nitrosylation / nitration of proteins the reactions of ROS (reactive oxygen species, e.g. lipoperoxidation) spontaneous oxidation of hemoproteins (hemoglobin methemoglobin) spontaneous oxidation of urobilinogens to urobilins (large intestine) condensation of amines with carbonyl compounds to heterocyclic derivatives dopamine + pyruvate salsolinol tryptamine + pyruvate harmane dopamine + dihydroxyphenylacetaldehyde tetrahydropapaveroline binding ligands to proteins: bilirubin + albumin bilirubin-albumin complex CO + hemoglobin carbonylhemoglobin the interactions of macromolecules: antigen + antibody immuno complex neurotoxins