I-TASSER server for protein 3D structure prediction (Q21284202)

protein structure prediction

Europe PubMed Central

title

I-TASSER server for protein 3D structure prediction (English)

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main subject

protein structure

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Yang Zhang

1

Yang

Zhang

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Dimensions Publication ID

Dimensions

1026371509

Creative Commons Attribution 2.0 Generic

25 August 2022

language of work or name

English

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publication date

2008

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published in

BMC Bioinformatics

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volume

9

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issue

1

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page(s)

40

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copyright license

start time

23 January 2008

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April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

1 reference

https://www.ncbi.nlm.nih.gov/pubmed/18215316

LOMETS: a local meta-threading-server for protein structure prediction

3 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

TM-align: a protein structure alignment algorithm based on the TM-score

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

19 March 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Identification of common molecular subsequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

A general method applicable to the search for similarities in the amino acid sequence of two proteins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Automated server predictions in CASP7

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Protein structure prediction and structural genomics

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Processing and analysis of CASP3 protein structure predictions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Scoring function for automated assessment of protein structure template quality

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

A graph-theory algorithm for rapid protein side-chain prediction

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Hidden Markov models for detecting remote protein homologies

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Template-based modeling and free modeling by I-TASSER in CASP7.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Prediction of global and local model quality in CASP7 using Pcons and ProQ.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Assessment of predictions in the model quality assessment category.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Ab initio modeling of small proteins by iterative TASSER simulations

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Servers for protein structure prediction.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

The victor/FRST function for model quality estimation.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Automated structure prediction of weakly homologous proteins on a genomic scale

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

SPICKER: a clustering approach to identify near-native protein folds

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

TOUCHSTONE II: a new approach to ab initio protein structure prediction

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Local energy landscape flattening: parallel hyperbolic Monte Carlo sampling of protein folding.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

CASP2 knowledge-based approach to distant homology recognition and fold prediction in CASP4.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Structural genomics and its importance for gene function analysis.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Accurate reconstruction of all-atom protein representations from side-chain-based low-resolution models

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

Improving sequence-based fold recognition by using 3D model quality assessment

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2245901

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18215316

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein structure prediction of CASP5 comparative modeling and fold recognition targets using consensus alignment approach and 3D assessment

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18215316

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A solution for the best rotation to relate two sets of vectors

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-9-40

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1186/1471-2105-9-40

1 reference

DBLP publication ID

journals/bmcbi/Zhang08

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1026371509

0 references

Fatcat ID

release_qdrcsrlrgfeyfbtban2jjr5w34

0 references

1 reference

1 reference

PubMed publication ID

18215316

1 reference