Automated deep-phenotyping of the vertebrate brain. (Q30352599)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28406399%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

title

Automated deep-phenotyping of the vertebrate brain (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28406399%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28406399%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

Yuelong Wu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28406399%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

Mostafa Ghannad-Rezaie

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28406399%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

Peter M Eimon

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28406399%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

Mehmet Fatih Yanik

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28406399%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

author name string

Yuelong Wu

2

1 reference

19 October 2017

Mehmet Fatih Yanik

5

1 reference

19 October 2017

language of work or name

English

0 references

publication date

13 April 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28406399%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28406399%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28406399%20AND%20SRC:MED&resulttype=core&format=json

Whole-brain activity mapping onto a zebrafish brain atlas

17 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

The ASTRA Toolbox: A platform for advanced algorithm development in electron tomography.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Subdivisions of the adult zebrafish pallium based on molecular marker analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Heterogeneously expressed fezf2 patterns gradient Notch activity in balancing the quiescence, proliferation, and differentiation of adult neural stem cells.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

The transcription factor Fezf2 directs the differentiation of neural stem cells in the subventricular zone toward a cortical phenotype

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Gene co-regulation by Fezf2 selects neurotransmitter identity and connectivity of corticospinal neurons

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Fez family transcription factors: controlling neurogenesis and cell fate in the developing mammalian nervous system

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Fast parallel image registration on CPU and GPU for diagnostic classification of Alzheimer's disease

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

A permutation testing framework to compare groups of brain networks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

GEISHA: an evolving gene expression resource for the chicken embryo

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Orthopedia transcription factor otpa and otpb paralogous genes function during dopaminergic and neuroendocrine cell specification in larval zebrafish

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Proneural genes in neocortical development.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Using Effect Size-or Why the P Value Is Not Enough

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Multi-allelic phenotyping--a systematic approach for the simultaneous analysis of multiple induced mutations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

A systematic genome-wide analysis of zebrafish protein-coding gene function

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

The ZIC gene family encodes multi-functional proteins essential for patterning and morphogenesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Fezf2 regulates multilineage neuronal differentiation through activating basic helix-loop-helix and homeodomain genes in the zebrafish ventral forebrain

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Chemical clearing and dehydration of GFP expressing mouse brains

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Fully automated cellular-resolution vertebrate screening platform with parallel animal processing.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Performance improvements for iterative electron tomography reconstruction using graphics processing units (GPUs).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Genomic Selection Identifies Vertebrate Transcription Factor Fezf2 Binding Sites and Target Genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Fezf2 directs the differentiation of corticofugal neurons from striatal progenitors in vivo.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

High-throughput in vivo vertebrate screening

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

How does multiple testing correction work?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Emx3 is required for the differentiation of dorsal telencephalic neurons

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Improved method for combination of immunocytochemistry and Nissl staining

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

fezf2 expression delineates cells with proliferative potential and expressing markers of neural stem cells in the adult zebrafish brain

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

The Fezf2-Ctip2 genetic pathway regulates the fate choice of subcortical projection neurons in the developing cerebral cortex

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

High-resolution in situ hybridization to whole-mount zebrafish embryos

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Specification of hypothalamic neurons by dual regulation of the homeodomain protein Orthopedia.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Orthopedia homeodomain protein is essential for diencephalic dopaminergic neuron development

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Transcription factors in glutamatergic neurogenesis: conserved programs in neocortex, cerebellum, and adult hippocampus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Neurogenin1 is a determinant of zebrafish basal forebrain dopaminergic neurons and is regulated by the conserved zinc finger protein Tof/Fezl

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Glycine transporters: essential regulators of synaptic transmission

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Zfp312 is required for subcortical axonal projections and dendritic morphology of deep-layer pyramidal neurons of the cerebral cortex

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Fezl regulates the differentiation and axon targeting of layer 5 subcortical projection neurons in cerebral cortex

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Fezl is required for the birth and specification of corticospinal motor neurons

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Pax6, Tbr2, and Tbr1 are expressed sequentially by radial glia, intermediate progenitor cells, and postmitotic neurons in developing neocortex

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Large-scale expression screening by automated whole-mount in situ hybridization

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Zinc finger gene fez-like functions in the formation of subplate neurons and thalamocortical axons

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Generating transparent zebrafish: a refined method to improve detection of gene expression during embryonic development.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Development of the catecholaminergic system in the early zebrafish brain: an immunohistochemical study

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Optical projection tomography as a tool for 3D microscopy and gene expression studies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Specification and morphogenesis of the zebrafish larval head skeleton

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Mutations in the zebrafish unmask shared regulatory pathways controlling the development of catecholaminergic neurons.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5441873

Fez1 is layer-specifically expressed in the adult mouse neocortex

3 June 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.23379

elastix: a toolbox for intensity-based medical image registration

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.23379

Zinc finger protein too few controls the development of monoaminergic neurons

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.23379

High-throughput hyperdimensional vertebrate phenotyping.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.23379

The too few mutant selectively affects subgroups of monoaminergic neurons in the zebrafish forebrain

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.23379

A rigidity penalty term for nonrigid registration.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.23379

Hedgehog and Fgf signaling pathways regulate the development of tphR-expressing serotonergic raphe neurons in zebrafish embryos

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.23379

A shape-based approach to the segmentation of medical imagery using level sets

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.23379

Correction of artefacts in optical projection tomography

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.23379

Optimization of image-forming optics for transmission optical projection tomography

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.23379

Visualization of monoaminergic neurons and neurotoxicity of MPTP in live transgenic zebrafish

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.23379

Specification of posterior hypothalamic neurons requires coordinated activities of Fezf2, Otp, Sim1a and Foxb1.2.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.23379

A zebrafish forebrain-specific zinc finger gene can induce ectopic dlx2 and dlx6 expression

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.23379

Detection of single nucleotide polymorphism (SNP) controlling the waxy character in wheat by using a derived cleaved amplified polymorphic sequence (dCAPS) marker

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28406399

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Active Learning for Interactive 3D Image Segmentation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28406399

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.7554/ELIFE.23379

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28406399%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28406399%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

PubMed publication ID

28406399

1 reference