Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists (Q37650434)

21 August 2017

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists (English)

1 reference

21 August 2017

1 reference

5

Jed A Fuhrman

1 reference

21 August 2017

4

David A Caron

1 reference

21 August 2017

Cheryl-Emiliane T Chow

series ordinal

1

1 reference

21 August 2017

Diane Y Kim

series ordinal

2

1 reference

21 August 2017

Rohan Sachdeva

series ordinal

3

1 reference

21 August 2017

language of work or name

1 reference

7 November 2013

1 reference

21 August 2017

1 reference

21 August 2017

8

1 reference

21 August 2017

4

1 reference

21 August 2017

816-829

1 reference

describes a project that uses

21 August 2017

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

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23 August 2017

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Efficient statistical significance approximation for local similarity analysis of high-throughput time series data

23 August 2017

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Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates

23 August 2017

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Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean

23 August 2017

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23 August 2017

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Strong, long-term temporal dynamics of an ecological network

23 August 2017

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Coherent dynamics and association networks among lake bacterioplankton taxa

23 August 2017

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Defining seasonal marine microbial community dynamics

23 August 2017

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Abundance and distribution of Synechococcus spp. and cyanophages in the Chesapeake Bay.

23 August 2017

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Trophic interactions between viruses, bacteria and nanoflagellates under various nutrient conditions and simulated climate change

23 August 2017

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Marine bacterial, archaeal and protistan association networks reveal ecological linkages.

23 August 2017

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Response of Prochlorococcus ecotypes to co-culture with diverse marine bacteria

23 August 2017

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Cytoscape 2.8: new features for data integration and network visualization

23 August 2017

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Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

23 August 2017

1 reference

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Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans

23 August 2017

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A global network of coexisting microbes from environmental and whole-genome sequence data

23 August 2017

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Viral control of bacterial biodiversity--evidence from a nutrient-enriched marine mesocosm experiment

23 August 2017

1 reference

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Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus

23 August 2017

1 reference

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Use of stable isotope-labelled cells to identify active grazers of picocyanobacteria in ocean surface waters

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus

23 August 2017

1 reference

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Structural and functional patterns of bacterial communities in response to protist predation along an experimental productivity gradient

23 August 2017

1 reference

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Integration of biological networks and gene expression data using Cytoscape

23 August 2017

1 reference

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Annually reoccurring bacterial communities are predictable from ocean conditions

23 August 2017

1 reference

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Distribution and abundance of uncultured heterotrophic flagellates in the world oceans

23 August 2017

1 reference

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Ecological networks and their fragility

23 August 2017

1 reference

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A dynamic programming algorithm for binning microbial community profiles

23 August 2017

1 reference

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Dynamics and Distribution of Cyanophages and Their Effect on Marine Synechococcus spp

23 August 2017

1 reference

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Resistance to co-occurring phages enables marine synechococcus communities to coexist with cyanophages abundant in seawater.

23 August 2017

1 reference

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Direct and indirect evidence of size-selective grazing on pelagic bacteria by freshwater nanoflagellates.

23 August 2017

1 reference

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Photosynthesis genes in marine viruses yield proteins during host infection

23 August 2017

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Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere

23 August 2017

1 reference

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Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series

23 August 2017

1 reference

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

23 August 2017

1 reference

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Regulation of bacterial assemblages in oligotrophic plankton systems: results from experimental and empirical approaches

23 August 2017

1 reference

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Significance of predation by protists in aquatic microbial food webs

23 August 2017

1 reference

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Food-web structure and network theory: The role of connectance and size

23 August 2017

1 reference

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Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir

23 August 2017

1 reference

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Flagellate predation on a bacterial model community: interplay of size-selective grazing, specific bacterial cell size, and bacterial community composition.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Marine viruses and their biogeochemical and ecological effects

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Prochlorococcus, a marine photosynthetic prokaryote of global significance

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Size-selective grazing on bacteria by natural assemblages of estuarine flagellates and ciliates

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Short-term observations of marine bacterial and viral communities: patterns, connections and resilience

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Prochlorococcus: advantages and limits of minimalism

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

T4 genes in the marine ecosystem: studies of the T4-like cyanophages and their role in marine ecology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Cyanophages infecting the oceanic cyanobacterium Prochlorococcus

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Genetic diversity and temporal variation in the cyanophage community infecting marine Synechococcus species in Rhode Island's coastal waters

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Seasonal variations in virus-host populations in Norwegian coastal waters: focusing on the cyanophage community infecting marine Synechococcus spp.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

A combined sequence-based and fragment-based characterization of microbial eukaryote assemblages provides taxonomic context for the Terminal Restriction Fragment Length Polymorphism (T-RFLP) method

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Seasonality and monthly dynamics of marine myovirus communities

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Contrasting community versus population-based estimates of grazing and virus-induced mortality of phytoplankton.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Pelagic food web patterns: do they modulate virus and nanoflagellate effects on picoplankton during the phytoplankton spring bloom?

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

The capsid of the T4 phage superfamily: the evolution, diversity, and structure of some of the most prevalent proteins in the biosphere.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Computing topological parameters of biological networks.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Viruses and flagellates sustain apparent richness and reduce biomass accumulation of bacterioplankton in coastal marine waters

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Synergistic and antagonistic effects of viral lysis and protistan grazing on bacterial biomass, production and diversity.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Key role of selective viral-induced mortality in determining marine bacterial community composition

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Grazing impact of different heterotrophic nanoflagellates on eukaryotic (Ostreococcus tauri) and prokaryotic picoautotrophs (Prochlorococcus and Synechococcus).

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Protistan diversity estimates based on 18S rDNA from seawater incubations in the Western North Atlantic

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: evidence for viral control of phytoplankton

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Complexity and fragility in ecological networks.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

Bacterial Growth Rate and Marine Virus-Host Dynamics.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3960540

The Ecological Role of Water-Column Microbes in the Sea

1 September 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.199

Annual variability of phytoplankton and bacteria in the subtropical North Pacific Ocean at Station ALOHA during the 1991–1994 ENSO event

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.199

Prochlorococcus marinus nov. gen. nov. sp.: an oxyphototrophic marine prokaryote containing divinyl chlorophyll a and b

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.199

A novel free-living prochlorophyte abundant in the oceanic euphotic zone

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.199

Viruses in Marine Planktonic Systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.199

The calibration and validation of SeaWiFS data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.199

Complex interactions in the microbial world: underexplored key links between viruses, bacteria and protozoan grazers in aquatic environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.199

Indirect interactions in the microbial world: specificities and similarities to plant–insect systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.199

Synechococcus growth in the ocean may depend on the lysis of heterotrophic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.199

CO-CORRESPONDENCE ANALYSIS: A NEW ORDINATION METHOD TO RELATE TWO COMMUNITY COMPOSITIONS

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.199

Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.199

Viruses and the microbial loop

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24196323

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Direct estimates of the contribution of viral lysis and microzooplankton grazing to the decline of a Micromonas spp. population

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.199

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/ISMEJ.2013.199

1 reference

Dimensions Publication ID

21 August 2017

0 references

1 reference

21 August 2017

PubMed publication ID

24196323

1 reference