ModelFinder: fast model selection for accurate phylogenetic estimates (Q38798531)

12 November 2017

ModelFinder: fast model selection for accurate phylogenetic estimates (English)

1 reference

12 November 2017

1 reference

Subha Kalyaanamoorthy

1

1 reference

12 November 2017

Bui Quang Minh

2

1 reference

12 November 2017

Thomas K F Wong

3

1 reference

12 November 2017

Arndt von Haeseler

4

1 reference

12 November 2017

Lars S Jermiin

5

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12 November 2017

language of work or name

English

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publication date

8 May 2017

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12 November 2017

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12 November 2017

14

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12 November 2017

6

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12 November 2017

587-589

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Mitochondrial DNA and trade data support multiple origins of Helicoverpa armigera (Lepidoptera, Noctuidae) in Brazil.

12 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

jmodeltest.org: selection of nucleotide substitution models on the cloud

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

jModelTest 2: more models, new heuristics and parallel computing

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

ProtTest 3: fast selection of best-fit models of protein evolution

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

INDELible: a flexible simulator of biological sequence evolution

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

jModelTest: phylogenetic model averaging

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

An improved general amino acid replacement matrix

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

ProtTest: selection of best-fit models of protein evolution

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

Characterization of the type I interferon locus and identification of novel genes

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

MODELTEST: testing the model of DNA substitution

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

A space-time process model for the evolution of DNA sequences.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

ModelOMatic: fast and automated model selection between RY, nucleotide, amino acid, and codon substitution models

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

Mixture models of nucleotide sequence evolution that account for heterogeneity in the substitution process across sites and across lineages

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

Inferring ancient divergences requires genes with strong phylogenetic signals.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

The influence of rate heterogeneity among sites on the time dependence of molecular rates

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

A molecular framework for the phylogeny of the ant subfamily dolichoderinae.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453245

From trajectories to averages: an improved description of the heterogeneity of substitution rates along lineages

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.4285

BEAST 2: a software platform for Bayesian evolutionary analysis

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.4285

Out of India, thrice: diversification of Asian forest scorpions reveals three colonizations of Southeast Asia

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.4285

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NMETH.4285

1 reference

Dimensions Publication ID

12 November 2017

0 references

1 reference

12 November 2017

PubMed publication ID

28481363

1 reference