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ORCIDMichael S. Waterman
Person information
- affiliation: University of Southern California, Los Angeles, USA
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2020 – today
- 2021
[j47]Christopher L. Barrett, Andrei C. Bura
, Qijun He, Fenix W. D. Huang, Thomas J. X. Li, Michael S. Waterman, Christian M. Reidys:
Multiscale Feedback Loops in SARS-CoV-2 Viral Evolution. J. Comput. Biol. 28(3): 248-256 (2021)- [j46]Michael S. Waterman:
The Human Genome Project: the Beginning of the Beginning. Quant. Biol. 9(1): 4 (2021) - [j45]Bonnie Berger, Michael S. Waterman, Yun William Yu:
Levenshtein Distance, Sequence Comparison and Biological Database Search. IEEE Trans. Inf. Theory 67(6): 3287-3294 (2021)
2010 – 2019
- 2019
- [j44]Sijie Chen, Yixin Chen, Fengzhu Sun, Michael S. Waterman, Xuegong Zhang:
A new statistic for efficient detection of repetitive sequences. Bioinform. 35(22): 4596-4606 (2019) - 2018
- [j43]Y. X. Rachel Wang, Ke Liu, Elizabeth Theusch, Jerome I Rotter, Marisa W. Medina, Michael S. Waterman, Haiyan Huang:
Generalized correlation measure using count statistics for gene expression data with ordered samples. Bioinform. 34(4): 617-624 (2018) - 2017
- [j42]Yang Young Lu, Kujin Tang, Jie Ren, Jed A. Fuhrman, Michael S. Waterman, Fengzhu Sun:
CAFE: aCcelerated Alignment-FrEe sequence analysis. Nucleic Acids Res. 45(Webserver-Issue): W554-W559 (2017) - 2014
- [j41]Kai Song, Jie Ren, Gesine Reinert, Minghua Deng, Michael S. Waterman, Fengzhu Sun:
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing. Briefings Bioinform. 15(3): 343-353 (2014) - [j40]Chun-Chi Liu, Yu-Ting Tseng, Wenyuan Li, Chia-Yu Wu, Ilya Mayzus, Andrey Rzhetsky, Fengzhu Sun, Michael S. Waterman, Jeremy J. W. Chen, Preet M. Chaudhary, Joseph Loscalzo, Edward Crandall, Xianghong Jasmine Zhou:
DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. Nucleic Acids Res. 42(Webserver-Issue): 137-146 (2014) - 2013
- [j39]Ehsan Behnam, Michael S. Waterman, Andrew D. Smith:
A Geometric Interpretation for Local Alignment-Free Sequence Comparison. J. Comput. Biol. 20(7): 471-485 (2013) - 2012
- [j38]Zhiyuan Zhai, Gesine Reinert, Kai Song, Michael S. Waterman, Yihui Luan, Fengzhu Sun:
Normal and Compound Poisson Approximations for Pattern Occurrences in NGS Reads. J. Comput. Biol. 19(6): 839-854 (2012) - 2011
- [j37]Lu Meng, Fengzhu Sun, Xuegong Zhang, Michael S. Waterman:
Sequence Alignment as Hypothesis Testing. J. Comput. Biol. 18(5): 677-691 (2011) - [j36]Wenyuan Li, Chun-Chi Liu, Tong Zhang, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou:
Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation. PLoS Comput. Biol. 7(6) (2011) - 2010
- [j35]Michael R. Mehan, Juan Nunez-Iglesias, Chao Dai, Michael S. Waterman, Xianghong Jasmine Zhou:
An integrative modular approach to systematically predict gene-phenotype associations. BMC Bioinform. 11(S-1): 62 (2010) - [j34]Zhiyuan Zhai, Shih-Yen Ku, Yihui Luan, Gesine Reinert, Michael S. Waterman, Fengzhu Sun:
The Power of Detecting Enriched Patterns: An HMM Approach. J. Comput. Biol. 17(4): 581-592 (2010) - [j33]Lin Wan, Gesine Reinert, Fengzhu Sun, Michael S. Waterman:
Alignment-Free Sequence Comparison (II): Theoretical Power of Comparison Statistics. J. Comput. Biol. 17(11): 1467-1490 (2010)
2000 – 2009
- 2009
- [j32]Jong Hyun Kim, Woo-Cheol Kim, Michael S. Waterman, Sanghyun Park, Lei M. Li:
HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenome. Bioinform. 25(18): 2430-2431 (2009) - [j31]Michael Q. Zhang, Michael S. Waterman, Xuegong Zhang:
The Seventh Asia Pacific Bioinformatics Conference (APBC2009). BMC Bioinform. 10(S-1) (2009) - [j30]Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou:
An Integrative Network Approach to Map the Transcriptome to the Phenome. J. Comput. Biol. 16(8): 1023-1034 (2009) - [j29]Gesine Reinert, David Chew, Fengzhu Sun, Michael S. Waterman:
Alignment-Free Sequence Comparison (I): Statistics and Power. J. Comput. Biol. 16(12): 1615-1634 (2009) - [j28]David C. Schwartz, Michael S. Waterman:
New Generations: Sequencing Machines and Their Computational Challenges. J. Comput. Sci. Technol. 25(1): 3-9 (2009) - 2008
- [c21]Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou:
An Integrative Network Approach to Map the Transcriptome to the Phenome. RECOMB 2008: 232-245 - 2007
- [j27]Haifeng Li, Anton Valouev, David C. Schwartz, Michael S. Waterman, Lei M. Li:
A Quantile Method for Sizing Optical Maps. J. Comput. Biol. 14(3): 255-266 (2007) - [j26]Fei Pan, Chi-Hsien Chiu, Sudip Pulapura, Michael R. Mehan, Juan Nunez-Iglesias, Kangyu Zhang, Kiran Kamath, Michael S. Waterman, Caleb E. Finch, Xianghong Jasmine Zhou:
Gene Aging Nexus: a web database and data mining platform for microarray data on aging. Nucleic Acids Res. 35(Database-Issue): 756-759 (2007) - [j25]Jong Hyun Kim, Michael S. Waterman, Lei M. Li:
Accuracy Assessment of Diploid Consensus Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. 4(1): 88-97 (2007) - [j24]Gesine Reinert, Michael S. Waterman:
On the Length of the Longest Exact Position Match in a Random Sequence. IEEE ACM Trans. Comput. Biol. Bioinform. 4(1): 153-156 (2007) - [c20]Yu Huang, Haifeng Li, Haiyan Hu, Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine Zhou:
Systematic discovery of functional modules and context-specific functional annotation of human genome. ISMB/ECCB (Supplement of Bioinformatics) 2007: 222-229 - [c19]Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong Jasmine Zhou:
A graph-based approach to systematically reconstruct human transcriptional regulatory modules. ISMB/ECCB (Supplement of Bioinformatics) 2007: 577-586 - 2006
- [j23]Anton Valouev, Yu Zhang, David C. Schwartz, Michael S. Waterman:
Refinement of optical map assemblies. Bioinform. 22(10): 1217-1224 (2006) - [j22]Jianjun Hu, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou:
Integrative missing value estimation for microarray data. BMC Bioinform. 7: 449 (2006) - [j21]Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman:
Alignment of Optical Maps. J. Comput. Biol. 13(2): 442-462 (2006) - [c18]Michael S. Waterman:
Whole Genome Optical Mapping. APBC 2006: 5 - [c17]Michael S. Waterman:
Stan Ulam and Computational Biology. RECOMB 2006: 159-159 - [e10]Alberto Apostolico, Concettina Guerra, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings. Lecture Notes in Computer Science 3909, Springer 2006, ISBN 3-540-33295-2 [contents] - 2005
- [j20]Kui Zhang, Zhaohui S. Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun:
HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinform. 21(1): 131-134 (2005) - [c16]Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman:
Alignment of Optical Maps. RECOMB 2005: 489-504 - [e9]Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings. Lecture Notes in Computer Science 3500, Springer 2005, ISBN 3-540-25866-3 [contents] - 2004
- [j19]Lei M. Li, Jong Hyun Kim, Michael S. Waterman:
Haplotype Reconstruction from SNP Alignment. J. Comput. Biol. 11(2/3): 505-516 (2004) - [e8]Sorin Istrail, Michael S. Waterman, Andrew G. Clark:
Computational Methods for SNPs and Haplotype Inference, DIMACS/RECOMB Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002, Revised Papers. Lecture Notes in Computer Science 2983, Springer 2004, ISBN 3-540-21249-3 [contents] - 2003
- [j18]Yu Zhang, Michael S. Waterman:
An Eulerian Path Approach to Global Multiple Alignment for DNA Sequences. J. Comput. Biol. 10(6): 803-819 (2003) - [c15]Michael S. Waterman, Yu Zhang:
Eulerian Path Methods for Multiple Sequence Alignment. CSB 2003: 29 - [c14]Lei M. Li, Jong Hyun Kim, Michael S. Waterman:
Haplotype reconstruction from SNP alignment. RECOMB 2003: 207-216 - [c13]Kui Zhang, Fengzhu Sun, Michael S. Waterman, Ting Chen:
Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data. RECOMB 2003: 332-340 - [e7]Martin Vingron, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman, Webb Miller:
Proceedings of the Sventh Annual International Conference on Computational Biology, RECOMB 2003, Berlin, Germany, April 10-13, 2003. ACM 2003, ISBN 1-58113-635-8 [contents] - 2002
- [j17]Mengxiang Tang, Michael S. Waterman, Shibu Yooseph:
Zinc Finger Gene Clusters and Tandem Gene Duplication. J. Comput. Biol. 9(2): 429-446 (2002) - [c12]Kui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin, Jun S. Liu, Fengzhu Sun:
Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data. Computational Methods for SNPs and Haplotype Inference 2002: 96-112 - [e6]Gene Myers, Sridhar Hannenhalli, David Sankoff, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Proceedings of the Sixth Annual International Conference on Computational Biology, RECOMB 2002, Washington, DC, USA, April 18-21, 2002. ACM 2002, ISBN 1-58113-498-3 [contents] - 2001
- [c11]Pavel A. Pevzner, Haixu Tang, Michael S. Waterman:
A new approach to fragment assembly in DNA sequencing. RECOMB 2001: 256-267 - [c10]Mengxiang Tang, Michael S. Waterman, Shibu Yooseph:
Zinc finger gene clusters and tandem gene duplication. RECOMB 2001: 297-304 - 2000
- [j16]Gesine Reinert, Sophie Schbath, Michael S. Waterman:
Probabilistic and Statistical Properties of Words: An Overview. J. Comput. Biol. 7(1-2): 1-46 (2000) - [e5]Ron Shamir, Satoru Miyano, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, RECOMB 2000, Tokyo, Japan, April 8-11, 2000. ACM 2000, ISBN 1-58113-186-0 [contents]
1990 – 1999
- 1999
- [e4]Martin Farach-Colton, Fred S. Roberts, Martin Vingron, Michael S. Waterman:
Mathematical Support for Molecular Biology, Proceedings from the DIMACS Special Year, 1998. DIMACS Series in Discrete Mathematics and Theoretical Computer Science 47, DIMACS/AMS 1999, ISBN 978-0-8218-0826-9 [contents] - [e3]Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, RECOMB 1999, Lyon, France, April 11-14, 1999. ACM 1999, ISBN 1-58113-069-4 [contents] - 1998
- [j15]Jae Kyu Lee, Vlado Dancík, Michael S. Waterman:
Estimation for Restriction Sites Observed by Optical Mapping Using Reversible-Jump Markov Chain Monte Carlo. J. Comput. Biol. 5(3): 505-515 (1998) - [c9]Jae Kyu Lee, Vlado Dancík, Michael S. Waterman:
Estimation for restriction sites observed by optical mapping using reversible-jump Markov chain Monte Carlo. RECOMB 1998: 147-152 - [e2]Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, RECOMB 1998, New York, NY, USA, March 22-25, 1998. ACM 1998, ISBN 0-89791-976-9 [contents] - 1997
- [j14]Michael S. Waterman, Sorin Istrail, Pavel A. Pevzner:
Selected Papers from RECOMB'97 - Preface. J. Comput. Biol. 4(3): 215-216 (1997) - [j13]Fengzhu Sun, Gary Benson, Norman Arnheim, Michael S. Waterman:
Pooling Strategies for Establishing Physical Genome Maps Using FISH. J. Comput. Biol. 4(4): 467-486 (1997) - [c8]George A. Komatsoulis, Michael S. Waterman:
Chimeric alignment by dynamic programming: algorithm and biological uses. RECOMB 1997: 174-180 - [c7]Fengzhu Sun, Gary Benson, Norman Arnheim, Michael S. Waterman:
Pooling strategies for establishing physical genome maps using FISH. RECOMB 1997: 294-299 - [e1]Michael S. Waterman:
Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, RECOMB 1997, Santa Fe, NM, USA, January 20-23, 1997. ACM 1997, ISBN 0-89791-882-7 [contents] - 1996
- [j12]Martin Vingron, Michael S. Waterman:
Alignment Networks and Electrical Networks. Discret. Appl. Math. 71(1-3): 297-309 (1996) - [j11]Richard Arratia, Daniela Martin, Gesine Reinert, Michael S. Waterman:
Poisson Process Approximation for Sequence Repeats and Sequencing by Hybridization. J. Comput. Biol. 3(3): 425-463 (1996) - 1995
- [b1]Michael S. Waterman:
Introduction to computational biology - maps, sequences, and genomes: interdisciplinary statistics. CRC Press 1995, ISBN 978-0-412-99391-6, pp. I-XV, 1-431 - [j10]Pavel A. Pevzner, Michael S. Waterman:
Multiple Filtration and Approximate Pattern Matching. Algorithmica 13(1/2): 135-154 (1995) - [j9]Ramana M. Idury, Michael S. Waterman:
A New Algorithm for DNA Sequence Assembly. J. Comput. Biol. 2(2): 291-306 (1995) - [c6]Pavel A. Pevzner, Michael S. Waterman:
Open Combinatorial Problems in Computational Molecular Biology. ISTCS 1995: 158-173 - 1994
- [j8]William R. Schmitt, Michael S. Waterman:
Linear Trees and RNA Secondary Structure. Discret. Appl. Math. 51(3): 317-323 (1994) - [j7]Larry Goldstein, Michael S. Waterman:
Approximations to Profile Score Distributions. J. Comput. Biol. 1(2): 93-104 (1994) - 1993
- [c5]Pavel A. Pevzner, Michael S. Waterman:
A Fast Filtration Algorithm for the Substring Matching Problem. CPM 1993: 197-214 - [c4]Michael S. Waterman:
Sequence Comparison and Statistical Significance in Molecular Biology (Abstract). ESA 1993: 396 - 1992
- [j6]X. Huang, Michael S. Waterman:
Dynamic programming algorithms for restriction map comparison. Comput. Appl. Biosci. 8(5): 511-520 (1992) - [c3]Pavel A. Pevzner, Michael S. Waterman:
Matrix Longest Common Subsequence Problem, Duality and Hibert Bases. CPM 1992: 79-89 - 1991
- [c2]E. T. Chow, Tim Hunkapiller, J. Peterson, Michael S. Waterman:
Biological information signal processor. ASAP 1991: 144-160 - [c1]E. T. Chow, John C. Peterson, Michael S. Waterman, Tim Hunkapiller, Barbara A. Zimmermann:
A systolic array processor for biological information signal processing. ICS 1991: 216-223 - 1990
- [j5]Jerrold R. Griggs, Phil Hanlon, Andrew M. Odlyzko, Michael S. Waterman:
On the number of alignments of k sequences. Graphs Comb. 6(2): 133-146 (1990)
1980 – 1989
- 1984
- [j4]Thomas H. Byers, Michael S. Waterman:
Technical Note - Determining All Optimal and Near-Optimal Solutions when Solving Shortest Path Problems by Dynamic Programming. Oper. Res. 32(6): 1381-1384 (1984) - [j3]David J. Lipman, W. John Wilbur, Temple F. Smith, Michael S. Waterman:
On the statistical significance of nucleic acid similarities. Nucleic Acids Res. 12(1): 215-226 (1984) - [j2]Michael S. Waterman, Temple F. Smith, H. L. Katcher:
Algorithms for restriction map comparisons. Nucleic Acids Res. 12(1): 237-242 (1984)
1970 – 1979
- 1979
- [j1]P. R. Stein, Michael S. Waterman:
On some new sequences generalizing the Catalan and Motzkin numbers. Discret. Math. 26(3): 261-272 (1979)
Coauthor Index
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