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2020 – today
- 2020
[j20]Nathan Cunningham
, Jim E. Griffin, David L. Wild:
ParticleMDI: particle Monte Carlo methods for the cluster analysis of multiple datasets with applications to cancer subtype identification. Adv. Data Anal. Classif. 14(2): 463-484 (2020)
2010 – 2019
- 2018
- [j19]Krzysztof Polanski, Bo Gao, Sam A. Mason, Paul Brown, Sascha Ott, Katherine J. Denby, David L. Wild:
Bringing numerous methods for expression and promoter analysis to a public cloud computing service. Bioinform. 34(5): 884-886 (2018) - 2016
- [j18]Nikolas S. Burkoff, Robert J. N. Baldock, Csilla Várnai, David L. Wild, Gábor Csányi:
Exploiting molecular dynamics in Nested Sampling simulations of small peptides. Comput. Phys. Commun. 201: 8-18 (2016) - 2015
- [j17]Christopher A. Penfold, Jonathan B. A. Millar, David L. Wild:
Inferring orthologous gene regulatory networks using interspecies data fusion. Bioinform. 31(12): 97-105 (2015) - 2013
- [j16]Nikolas S. Burkoff, Csilla Várnai, David L. Wild:
Predicting protein β-sheet contacts using a maximum entropy-based correlated mutation measure. Bioinform. 29(5): 580-587 (2013) - 2012
- [j15]Christopher A. Penfold, Vicky Buchanan-Wollaston, Katherine J. Denby, David L. Wild:
Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks. Bioinform. 28(12): 233-241 (2012) - [j14]Paul D. W. Kirk, Jim E. Griffin, Richard S. Savage, Zoubin Ghahramani, David L. Wild:
Bayesian correlated clustering to integrate multiple datasets. Bioinform. 28(24): 3290-3297 (2012) - 2011
- [j13]Emma J. Cooke, Richard S. Savage, Paul D. W. Kirk, Robert Darkins, David L. Wild:
Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements. BMC Bioinform. 12: 399 (2011) - 2010
- [j12]Richard S. Savage, Zoubin Ghahramani, Jim E. Griffin, Bernard J. de la Cruz, David L. Wild:
Discovering transcriptional modules by Bayesian data integration. Bioinform. 26(12): 158-167 (2010) - [j11]Oliver Stegle, Katherine J. Denby, Emma J. Cooke, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt:
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. J. Comput. Biol. 17(3): 355-367 (2010) - [p1]John Angus, Matthew J. Beal, Juan Li, Claudia Rangel, David L. Wild:
Inferring Transcriptional Networks Using Prior Biological Knowledge and Constrained State-Space Models. Learning and Inference in Computational Systems Biology 2010: 117-152
2000 – 2009
- 2009
- [j10]Richard S. Savage, Katherine A. Heller, Yang Xu, Zoubin Ghahramani, William M. Truman, Murray Grant, Katherine J. Denby, David L. Wild:
R/BHC: fast Bayesian hierarchical clustering for microarray data. BMC Bioinform. 10 (2009) - [j9]Mansoor A. S. Saqi, Richard J. B. Dobson, Preben Kraben, David A. Hodgson, David L. Wild:
An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching. J. Integr. Bioinform. 6(1) (2009) - [j8]Carl Edward Rasmussen, Bernard J. de la Cruz, Zoubin Ghahramani, David L. Wild:
Modeling and Visualizing Uncertainty in Gene Expression Clusters Using Dirichlet Process Mixtures. IEEE ACM Trans. Comput. Biol. Bioinform. 6(4): 615-628 (2009) - [c7]Oliver Stegle, Katherine J. Denby, David L. Wild, Stuart McHattie, Andrew Meade, Zoubin Ghahramani, Karsten M. Borgwardt:
Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series. GCB 2009: 133-142 - [c6]Oliver Stegle, Katherine J. Denby, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt:
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. RECOMB 2009: 201-216 - 2008
- [j7]Alexei A. Podtelezhnikov, David L. Wild:
CRANKITE: A fast polypeptide backbone conformation sampler. Source Code Biol. Medicine 3 (2008) - 2006
- [j6]Wei Chu, Zoubin Ghahramani, Alexei A. Podtelezhnikov, David L. Wild:
Bayesian Segmental Models with Multiple Sequence Alignment Profiles for Protein Secondary Structure and Contact Map Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 3(2): 98-113 (2006) - [c5]Wei Chu, Zoubin Ghahramani, Roland Krause, David L. Wild:
Identifying Protein Complexes in High-Throughput Protein Interaction Screens Using an Infinite Latent Feature Model. Pacific Symposium on Biocomputing 2006: 231-242 - 2005
- [j5]Matthew J. Beal, Francesco Falciani, Zoubin Ghahramani, Claudia Rangel, David L. Wild:
A Bayesian approach to reconstructing genetic regulatory networks with hidden factors. Bioinform. 21(3): 349-356 (2005) - [j4]Wei Chu, Zoubin Ghahramani, Francesco Falciani, David L. Wild:
Biomarker discovery in microarray gene expression data with Gaussian processes. Bioinform. 21(16): 3385-3393 (2005) - 2004
- [j3]Claudia Rangel, John Angus, Zoubin Ghahramani, Maria Lioumi, Elizabeth Sotheran, Alessia Gaiba, David L. Wild, Francesco Falciani:
Modeling T-cell activation using gene expression profiling and state-space models. Bioinform. 20(9): 1361-1372 (2004) - [c4]Wei Chu, Zoubin Ghahramani, David L. Wild:
Protein secondary structure prediction using sigmoid belief networks to parameterize segmental semi-Markov models. ESANN 2004: 81-86 - [c3]Wei Chu, Zoubin Ghahramani, David L. Wild:
A graphical model for protein secondary structure prediction. ICML 2004 - [c2]Philip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen, John D. Westbrook:
The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures. Pacific Symposium on Biocomputing 2004: 375-386 - [c1]Ananya Dubey, Seungwoo Hwang, Claudia Rangel, Carl Edward Rasmussen, Zoubin Ghahramani, David L. Wild:
Clustering Protein Sequence and Structure Space with Infinite Gaussian Mixture Models. Pacific Symposium on Biocomputing 2004: 399-410 - 2002
- [j2]Alpan Raval, Zoubin Ghahramani, David L. Wild:
A Bayesian network model for protein fold and remote homologue recognition. Bioinform. 18(6): 788-801 (2002)
1990 – 1999
- 1999
- [j1]Mansoor A. S. Saqi, David L. Wild, M. J. Hartshorn:
Protein analyst - a distributed object environment for protein sequence and structure analysis. Bioinform. 15(6): 521-522 (1999)
Coauthor Index
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