3rd-Quarter General Biology 2 STEM
3rd-Quarter General Biology 2 STEM
3rd-Quarter General Biology 2 STEM
SHS
K to 12 BEC
https://images.app.goo.gl/MhHEuYajesop8u1c6
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The Process of Genetic Engineering
As shown in Figure 1, the first stage of the process is to identify the section of
DNA that contains required gene from the source chromosome. Second stage,
extract the required gene. Third stage, bacterial plasmid is removed from the
bacterial cell and cut open using enzymes. Fourth stage, insert plasmid into host cell
and sealed using enzymes. Fifth stage, grow transformed cells to produce a
genetically modified organism (GMO).
The modified plasmid is inserted into the host bacterial cell to produce a
genetically modified organism.
The bacterial plasmid is removed from the bacterial cell and cut open using
enzymes.
The required gene is inserted into the bacterial plasmid and sealed using
enzymes.
Activity 2.
Directions. Study the statements below. Choose the correct process of production of
human insulin by genetic engineering method inside the box. Write your answers
on the box provided for each process.
3. Insert human insulin-producing gene into the bacterial plasmid vector to form the
recombinant
DNA of human insulin-producing gene.
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4. A plasmid DNA is extracted from a bacterium and cut with restriction enzyme, forming
plasmid vector.
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5. Introduce this recombinant DNA into a bacterial cell to form the recombinant
bacterium.
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IV. Reflection
How important is genetic engineering in the field of agriculture, industry, and
medicine?
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SHS GENERAL BIOLOGY I ACTIVITY SHEET No. 2
Applications of Recombinant DNA
WEEK 2
I. Learning Competency with Code
Discuss the applications of recombinant DNA (STEM_BIO11/12-IIIa-b-7)
IV. Reflection
1. How does application of recombinant DNA influenced the way in today’s life?
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Name of Learner:_________________________________________________________
Grade and Section:__________________________ Date: ______________________
While most of you are confused about the descent of modification, this
concept was actually realized in the mid-nineteenth century through observation by
the two naturalists, Charles Darwin and Alfred Russel Wallace. Darwin is
considered to be the “Father of Natural Selection” but the actual concept was
actually developed both by Darwin and Wallace. Both of them observed similar
patterns in other organisms and they independently developed the same
explanation for how and why such changes occur. Darwin called it a natural
selection, also known as the “survival of the fittest”, it is the proliferation of
individuals with favorable traits and is evident on the survival of the species due to
environmental change that can be passed on to the next generation.
Darwin himself used the phrase “descent with modification” but was
reformed to the word “evolution” through time. The discovery of the descent with
modification did not stop with their works in fact, the search for evidences continue
to strengthen the “Theory of Evolution”. The theory of evolution is based on the
idea that all species are related and gradually change over time.
Small changes in every generation over billions of years have led to new
species branching from one common ancestor creating a “tree of life”. These
changes occur in the DNA inside a gene. Factors leading to these changes could be
due to adaptation, natural selection or survival of the fittest, genetic drift, mutation
and recombination as discussed in your previous learning activity. In each case,
the offspring in the population will have slightly different genes than the parents.
These are the reasons for the organismal diversity.
Most species came from one common ancestor that diverge or converge
through time affecting physical transition. It can undergo various kinds of natural
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selection and may engage in several patterns of evolution. Environmental factors
can have several effects on how species are exposed to them. This could lead to the
two main types of evolutional patterns: convergent and divergent evolution as
sshown in the figure below.
Convergent evolution takes place when two different species started to share
the same traits because they are in the same environment. Species can converge in
sympatry. An example of convergent evolution is the similar nature of wings of
insects, birds and bats.
A butterfly species in Figure 3, is an
example of species that adapted to
change. The alteration of butterfly
wings’ color as seen in the illustration
evolve to help them protect themselves
from predators. Beyond butterflies, it is
possible that this type of speciation has
been part of the species convergence
They evolve after one has become
aposematic (warningly colored) because
it is toxic or poisonous.
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Figure 3. Modification of butterfly wings,showing a
convergent evolution.
Today, it is clearly understood that
organisms descended from ancestral species. The organisms that you see now
could be a way different before or could be from the same ancestors but have
changed through time because of the above-mentioned environmental factors.
Activity 1
1. How does the descent of modification occur? What are the environmental
factors involve?
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2. Provided with the evidences below, choose which of these represents descent
with modification.
A.)
B.)
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Activity 2
1. Dog is a common pet found at home. Using this species create a diagram to show
patterns of descent with modification of dog from its common ancestor. You can use
the internet or book for your reference. Answers could be in a form of drawing or
word. Arrows can be use in indicating the modification. (Please see example below)
IV. Reflection
If you have a power to modify a part of yourself, what would it be? Why?
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Name of Learner:____________________ Grade and Section:______________
School:_________________________________ Date: ___________________________
WEEK 3
The following are early scientist who contributed to shaping and developing
evolutionary thought:
1. Carolus Linnaeus
The Swedish naturalist Carolus Linnaeus (1707-1778) is best known for
developing a method of classifying plants and animals. In his famous work, Systema
Naturae (Systems of Nature) 1753, he standardized the use of genus and species
terminology and established the system of binomial nomenclature. He also added two
more categories: class and order. Linnaeus’ four-level system became the basis for
taxonomy, the system of classification we continue to use today.
Another of Linnaeus’ innovations was to include humans in his
classification of animals, placing them in genus Homo and species sapiens.
2. Jean-Baptiste Lamarck
The first scientist to explain the evolutionary process was a French
naturalist named Jean-Baptiste Lamarck (1744-1829). In 1809, Lamarck suggested a
dynamic relationship between species and the environment such that if the external
environment changed, an animal’s activity patterns would also change to accommodate
the new circumstances. This would result in the increased or decreased use of certain
body parts, and consequently, those body parts would be modified. Because the
alteration would make the animal better suited to its habitat, the trait would be passed
on to its offspring. This theory is known as the inheritance of acquired
characteristics, or the use-disuse theory. Thus, according to this theory, a trait
acquired by an animal during its lifetime can be passed on to offspring. Today we know
that this explanation is wrong, because only those traits that are influenced by genetic
information contained within sex cells can be inherited.
Moreover, he coined the term biology to refer to studies of living organisms.
3. Georges Cuvier
Georges Cuvier (1769-1832), the most vehement opponent of Lamarck, was
a French vertebrate paleontologist who introduced the concept of extinction to explain
the disappearance of animals represented by fossils. Rather than assume that
similarities between certain fossil forms and living species indicated evolutionary
relationships, he suggested a variation of theory known as catastrophism. In his Essay
on the Theory of the Earth (1813) Cuvier proposed that now-extinct species had been
wiped out by periodic catastrophic flooding events.
Catastrophism was the belief that the earth’s geological features are the
results of sudden, worldwide cataclysmic events like the Noah flood. He suggested that a
series of regional disasters had destroyed most or all the plant and animal life in various
places. These areas were then restocked with new, similar forms that migrated in from
unaffected regions.
4. Thomas Malthus
In 1798, Thomas Malthus (1766-1834), an English clergyman and
economist, wrote An Essay on the Principle of Population, which inspired both Charles
Darwin and Alfred Wallace in their separate discoveries of natural selection. In his essay,
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Malthus argued for limits to human population growth and pointed out that human
populations could double in size every 25 years if they weren’t kept in check by limited
food supplies.
Darwin accepted Malthus’s proposition that population size increases
exponentially while food supplies remain relatively constant, and they extended it to all
organisms. He recognized the important fact that when population size is limited by the
availability of resources, there must be constant competition for food and water. And
competition between individuals is the ultimate key to understanding natural selection.
5. James Hutton
Hutton (1726 – 1797) is best known for his theory of gradualism. Hutton
was a geologist who left the medical field to travel and study the earth’s surface. In 1785,
Hutton published his paper titled ‘Theory of the Earth.’ In this paper, he explained how
the study of geology confines itself as the study of the material makeup of the earth. He
suggested many explanations and origins for many geological occurrences ranging from
molten rock formations to the origins of materials found on sea floors.
It was not until the third version of the Theory of the Earth was
published when Hutton introduced his theory of gradualism. This is where he
recognized that change did occur, but that change was the gradual culmination
of slow processes happening over great amounts of time. By using this idea, it is
possible to observe the earth today and make assumptions about the past since
change happened over such a long period of time, the earth today must be
relevant to the earth of the past.
6. Charles Lyell
Charles Lyell (1797-1875), the son of Scottish landowners, is considered
the founder of modern geology. In 1833, his immensely important work, Principles of
Geology, he argued the geological processes observed in the present are the same as
those that occurred in the past. This theory is called uniformitarianism. The theory
demonstrated that such forces as wind, water erosion, local flooding, frost,
decomposition of vegetation, volcanoes, earthquakes, and glacial movements had all
contributed in the past to produce the geological landscape that exists in the present.
What is more, the fact that these processes still occurred indicated that geological
change was still happening and that the forces driving such change were consistent, or
uniform, over time.
7. Charles Darwin
Charles Darwin (1809-1882) was one of six children of Dr. Robert and
Susanna Darwin. After the death of his mother when he was eight years old, Darwin was
raised by his father and his older sisters. Because he showed little interest in anything
except hunting, shooting, and perhaps science, his father sent him to Edinburgh
University to study medicine. It was there that Darwin first became acquainted with the
evolutionary theories of Lamarck and others.
While at Edinburgh, young Darwin studied with professors who were
outspoken supporters of Lamarck. Therefore, although he hated medicine and left
Edinburgh after two years, his experience there was a formative period in his intellectual
development.
Even though Darwin was indifferent to religion, he next went to Christ’s
College, Cambridge, to study theology. It was during his Cambridge years that he
seriously cultivated his interests in natural science, immersing himself in botany and
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geology. It is no wonder that following his graduation in 1831, he was invited to join a
scientific expedition that would circle the globe. And so, it was that Darwin set sail
abroad the HMS Beagle on December 17, 1831 that would take almost five years and
would forever change not only the course of Darwin’s life but also the history of
biological science.
Darwin went abroad the Beagle believing in fixity of species. But during the
voyage he privately began to have doubts. During the famous stopover at the Galapagos
Islands, Darwin noticed that the vegetation and animals (especially) birds shared many
similarities with those on the mainland of South America. But they weren’t identical to
them. What’s more, the birds on one island were somewhat different from those living on
another. Darwin collected 13 different varieties of Galapagos finches, and it was clear
that they represented a closely affiliated group; but they differed regarding certain
physical traits, particularly the shape and size of their beaks.
The insight that Darwin gained from the finches is legendary. He
recognized that the various Galapagos finches had all descended from a common
mainland ancestor and had been modified over time in response to different island
habitats and dietary preferences.
Darwin arrived back in England in October 1836 and was immediately
accepted into the most prestigious scientific circles. He married his cousin, Emma
Wedgwood, and moved to the village of Down, near London, where he spent the rest of
his life writing on topics ranging from fossils to orchids.
At Down, Darwin began to develop his views on what he called natural
selection. This concept was borrowed from animal breeders, who choose, or “select”, as
breeding stock those animals that possess certain traits they want to emphasize in
offspring. Darwin applied his knowledge of domesticated species to naturally occurring
ones, recognizing that in undomesticated organisms, the selective agent is nature, not
humans.
By the late 1830s, Darwin had realized that biological variation within a
species was crucial. Furthermore, he recognized that sexual reproduction increased
variation, although he didn’t know why. Then, in 1838, he read Malthus’ Essay, and
there he found the answer to the question of how new species came to be. He accepted
from Malthus that populations increase at a faster rate than do resources, and he
recognized that in nonhuman animals, increase in population size is continuously and
restricted by limited food supplies. He also accepted that in nature there is a constant
“struggle for existence”. The idea that in each generation more offspring are born than to
survive to adulthood, coupled with the notions of competition for resources and
biological diversity, was all Darwin needed to develop his theory of natural selection.
In December 1859, Darwin completed and published his greatest work, On the
Origin of Species, where the riddle of species was now explained: Species were mutable,
not fixed; and they evolved from other species through the mechanism of natural
selection.
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Activity Proper
Reflection
Complete the statements below.
I understand_____________________________________________________________________
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I don’t understand _____________________________________________________________
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Name of Learner: _________________________________________________________________
Grade and Section: ___________________________________Date: ______________________
Analogous structures are structures that perform the same function but have
emerge from different origin.
Vestigial structures are structures that exist in organisms that have no known
function which is believed to be remaining parts from the ancestor.
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2 Activity Proper
1. Figure 1 below shows corresponding portions of hemoglobin molecules in humans
and five other vertebrates. The numbers indicate the position of a particular
amino acid (abbreviated name) in the chain.
Directions: Study figure 1 and complete the table below by comparing the amino acid
sequence of each organism with that of a human and count the number of differences.
Answer the guide questions that follow.
Questions:
3. Based on your answer in the table, which organisms do you think are the least
related? Explain your answer.
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4. Which organisms do you think are closely related? Explain your answer.
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5. How does similarity in the biochemical level can be used as evidence of evolution?
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4. Directions: Examine the following statements and then decide which evidence of
evolution does it supports. Choose whether biogeography, fossil records,
molecular biology, structure, or embryology.
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https://www.ck12.org/c/biology/biogeography/l
esson/Biogeography-BIO/
Fossil
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https://www.merriam-webster.com/words-at-play/fossil-words
Homologous Structure
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https://courses.lumenlearning.com/suny-wmopen-
biology1/chapter/outcome-evidence-for-evolution/
Embryology
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Name of Learner: ____________________________________________________
Grade and Section: _______________________ Date: _____________________
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Living organisms sit like leaves at the tips of the branches of the Tree
of Life. Living things share a common ancestor. All organisms are related to
one another no matter how different they seem. Scientists collect
information that allows them to make evolutionary connections between
organisms. Similar to detective work, scientists must use evidence to
uncover the facts. In the case of phylogeny, evolutionary investigations focus
on two types of evidence: morphologic (form and function) and genetic.
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fins and appendages, and the shape of the tails in fishes and whales, which are
mammals. These structures bear superficial similarity because they are
adaptations to moving and maneuvering in the same environment—water.
When a characteristic that is similar occurs by adaptive convergence
(convergent evolution), and not because of a close evolutionary relationship, it is
called an analogous structure. In another example, insects use wings to fly like
bats and birds. We call them both wings because they perform the same
function and have a superficially similar form, but the embryonic origin of the
two wings is completely different. The difference in the development, or
embryogenesis, of the wings in each case is a signal that insects and bats or
birds do not share a common ancestor that had a wing. The wing structures,
shown in Figure 3 evolved independently in the two lineages.
Molecular Comparisons
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Clades can vary in size depending on which branch point is being
referenced. The important factor is that all of the organisms in the clade or
monophyletic group stem from a single point on the tree. This can be
remembered because monophyletic breaks down into “mono,” meaning one,
and “phyletic,” meaning evolutionary relationship.
Shared Characteristics
The tricky aspect to shared ancestral and shared derived characters is the
fact that these terms are relative. The same trait can be considered one or
the other depending on the particular diagram being used. Note that the
amniotic egg is a shared ancestral character for the Amniota clade, while
having hair is a shared derived character for some organisms in this group.
These terms help scientists distinguish between clades in the building of
phylogenetic trees.
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Choosing the Right Relationships
Imagine being the person responsible for organizing all of the items in a
department store properly—an overwhelming task. Organizing the
evolutionary relationships of all life on Earth proves much more difficult:
scientists must span enormous blocks of time and work with information
from long-extinct organisms. Trying to decipher the proper connections,
especially given the presence of homologies and analogies, makes the task of
building an accurate tree of life extraordinarily difficult. Add to that the
advancement of DNA technology, which now provides large quantities of
genetic sequences to be used and analyzed. Taxonomy is a subjective
discipline: many organisms have more than one connection to each other, so
each taxonomist will decide the order of connections.
For scientists deciphering evolutionary pathways, the same idea is used: the
pathway of evolution probably includes the fewest major events that
coincide with the evidence at hand. Starting with all of the homologous
traits in a group of organisms, scientists look for the most obvious and
simple order of evolutionary events that led to the occurrence of those traits.
6. Activity
Proper Activity 1
2. Dolphins and fish have similar body shapes. Is this feature more likely
a homologous or analogous trait?
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3. Describe maximum parsimony.
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Name of Learner: ________________________________________________________
Grade Level/Section:__________ ____________________Date:
5 Activity Proper
Activity 1. Reading Time!
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Guide questions:
11. Why would scientists classify in the same group organisms with homologous
structures?
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Direction: Write CORRECT if the statement is true. If it is wrong, change the underline
word to make it correct.
_________1. Dolphins and sharks have fins that are homologous structures.
_________2. Closely related living organisms have DNA sequences that have similar
patterns.
_________3. Organisms that have analogous structures share a common ancestry.
_________4. Taxonomy is the study of identifying, naming and classifying living
things.
_________5. The human and chimpanzee arms are structures that are homologous.
IV. Reflection:
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Name of Learner: _________________________________________________________________
Grade and Section: _______________________________________ Date:__________________
Taxonomy is the branch of biology that classifies all living things. The
taxonomic system was devised by Carolus Linnaeus (1707-1778). It is a
hierarchical system since organisms are grouped into even more inclusive categories
from species up to kingdom. In 1981, a category higher than a kingdom, called
domain, was proposed by Carl Woese.
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Kingdom
Before domains were introduced, kingdom was the highest taxonomic rank. In
the past, the different kingdoms were Animalia, Plantae, Fungi, Protista, Archaea, and
Bacteria (Archaea and Bacteria were sometimes grouped into one kingdom, Monera).
Phylum
Phylum (plural: phyla) is the next rank after kingdom; it is more specific than
kingdom, but less specific than class. There are 35 phyla in the kingdom Animalia,
including Chordata (all organisms with a dorsal nerve cord), Porifera (sponges), and
Arthropoda (arthropods).
Class
Class was the most general rank proposed by Linnaeus; phyla were not
introduced until the 19th Century. There are 108 different classes in the kingdom
Animalia, including Mammalia (mammals), Aves (birds), and Reptilia (reptiles),
among many others. The classes of Animalia that Linnaeus proposed are similar to
the ones used today, but Linnaeus’ classes of plants were based on attributes like
the arrangement of flowers rather than relatedness.
Order
Order is more specific than class. Some of Linnaeus’ orders are still used
today, such as Lepidoptera (the order of butterflies and moths). There are between
19-26 orders of Mammalia, depending on how organisms are classified—sources
differ. Some orders of Mammalia are Primates, Cetaceans (whales, dolphins, and
porpoises), Carnivora (large carnivores/omnivores), and Chiroptera (bats).
Family
Family is, in turn, more specific. Some families in the order Carnivora, for
example, are Canidae (dogs, wolves, foxes), Felidae (cats), Mephitidae (skunks), and
Ursidae (bears). There are 12 total families in the order Carnivora.
Genus
Genus (plural: genera) is even more specific than family. It is the first part of
an organism’s scientific name using binomial nomenclature; the second part is the
species name.
Species
Species is the most specific major taxonomic rank; species are sometimes
divided into sub species, but not all species have multiple forms that are different
enough to be called sub species. There are 2an estimated 8.7 million different
species of organisms on Earth, but the vast majority have yet to be discovered and
categorized.
Very general:
DOMAIN contains many
organisms
KINGDOM
PHYLUM
CLASS
ORDER
FAMILY
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The Linnaean taxonomy which is hierarchical in nature is the most employed
system nowadays. This system was created long before scientists understood that
organisms evolved.
The table below illustrates how four species are classified using the present
classification system.
DOMAIN EUKARYA
KINGDOM Animalia Plantae
PHYLUM Chordata Arthropoda Magnoliophyta
CLASS Mammalia Insecta Lilopsida
ORDER Primates Canivora Diptera Liliales
FAMILY Hominidae Canidae Drosophilidae Liliaceae
GENUS Homo Canis Drosophila Allium
specific epithet sapiens familiaris melanogaster cepa
SPECIES Homo sapiens Canis familiaris Drosophila Allium cepa
melanogaster
Binomial nomenclature
Examples:
SPECIES GENUS ENGLISH SPECIFIC ENGLISH
MEANING EPITHET MEANING
Canis familiaris Canis a dog familiaris familiar
Felis catus Felis happy catus cat
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Sample Key: Key to common snacks
ACTIVITY 1
Directions: In the inverted pyramid, enumerate the different taxa based on the
taxonomic hierarchy (in order) and describe the distinctive characteristics
of each taxon. Write your answers on the space provided.
Taxonomic Hierarchy Description
Very
general:
contains
many
organisms
Very
specific:
contains
closely
related
organisms
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ACTIVITY 2
Directions: Identify the taxonomy of pig, chicken, and sunflower based on each
taxonomic rank. Write your answer on the space provided. You may
search the answer on the internet or in other sources. Complete the
table. by writing the taxa (orderly manner) in the first column. (Given as
an example is the taxonomy of human.)
DOMAIN EUKARYA
Animalia
Chordata
Mammalia
Primates
Hominidae
Homo
Homo sapiens
COMMON NAME human pig chicken sunflower
Guide Question:
IV. Reflection
13. understand
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I don’t understand
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Name of Learner: _______________________________________________________
Grade & Section: _______________________________Date: __________________
This learning activity will help you describe species diversity and cladistics,
including the types of evidence and procedures that can be used to establish
evolutionary relationships.
A. Reading Time
Directions: Read and study the selection below to be able to answer the questions
that follow.
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Figure 1. Shows the branching lines represents evolutionary lineage. For example, for
the trait “egg with shells” only crocodiles and birds are included.
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ACTIVITY 2. Cladogram Analysis.
Directions: Study the figure below and refer to the following cladogram to answer
the questions below in your notebook.
ACTIVITY 3
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